Determination of ochratoxin a with a DNA aptamer

This work describes the identification of an aptamer that binds with high affinity and specificity to ochratoxin A (OTA), a mycotoxin that occurs in wheat and other foodstuffs, and a quantitative detection method for OTA based on the use of this aptamer. Aptamers are single-stranded oligonucleotides selected in vitro to bind to molecular targets. The aptamer selected in this work exhibited a dissociation constant in the nanomolar range and did not bind compounds with structures similar to OTA such as N-acetylphenylalanine or warfarin. The aptamer bound with a 100-fold less affinity to ochratoxin B. The selected aptamers could be used for the determination of ppb quantities of OTA in naturally contaminated wheat samples. Further work is ongoing to broaden the application demonstrated here with the development of sensors, affinity columns, and other analytical systems for field and laboratory determination of this toxin in food and agricultural products.     

Remediation of a long-term copper-contaminated soil using a polyacrylate polymer

Abstract. We investigated whether a polyacrylate polymer could be used to remediate a soil which had been contaminated with copper for many years. Perennial ryegrass was grown in a loamy sand containing 230 mg ammonium-acetate-EDTA extractable Cu kg⁻¹ and amended with 0, 0.1 and 0.2% of polymer. Growth of perennial ryegrass was stimulated in the polymer-amended soil, especially in the soil with 0.1% of polymer. After plant growth for 177 days, the amount of water extractable copper present in the unamended soil was 17 times that of the original soil. In the soil amended with 0.1% of polymer the level of copper after plant growth was only 0.11 times the amount present in the unamended soil. When the soil was incubated with polymer in the absence of plants, the level of water extractable copper was not reduced. The polymer seems to compete with plants for copper, and to prevent the increase of copper in soil solution brought about by root exudates.     

Heterogeneous solute flow in a sandy soil under a pine forest: evaluation of a modeling concept

This study investigated the heterogeneous water characteristic functions and hydraulic conductivities for a gleyic podzol under a coniferous forest 40 km northeast of Hannover, Germany. The hydraulic properties were parameterized with the van Genuchten model. Reference functions and sets of scaling factors were derived for every horizon. The scaling factors showed correlation lengths of about 0.2 m. Along a 10 m long transect the spatially variable rain throughfall as the upper boundary and the groundwater level as the lower boundary was measured. A tracer experiment was conducted for the period of main groundwater recharge. Using the independent measurements of heterogeneous hydraulic properties, we simulated the solute transport for this period with a conventional model that solves the Richards' equation for water flow and the convective dispersive equation for solute transport. We found qualitative agreement between some features of the measured and modeled solute transport such as its channel‐like structure. However, the partly preferential flow of solutes and the correspondingly large dispersivities could not be modeled.     

Estimation of nitrate retention in a Ferralsol by a transient-flow method

Anion retention is important in highly weathered soils that contain large amounts of iron and aluminium oxides with surfaces of variable charge. Sorption mechanisms retard anionic solute transfer through these soils. We determined the retardation factor for nitrate in highly weathered Ferralsols from New Caledonia from dynamic experiments using a transient‐flow method, and we evaluated the effect of soil solution concentration and organic matter content. A simple method with sectionable tubes was used to determine the nitrate isotherm during non‐steady‐state water flow under unsaturated conditions. The topsoil retarded the movement of nitrate, and the sorption followed a linear isotherm. In subsoils, retardation factors were larger and increased from 1.15 to 2.05 at soil pH as the NO₃^–‐N concentration of the input solution decreased from 71.43 to 0.35 mm , indicative of a non‐linear isotherm. Positive surface charge sites were considered to be of two types: one with strong affinity for nitrate at small concentrations and one with weak affinity for adsorption of nitrate at larger concentrations. This type of isotherm with high‐ and low‐energy sites is similar to those found for oxyanions and heavy metals. The related anion exchange capacity was larger than that usually observed in soils of variable charge. Not all exchange sites were detected with our method, and some sites were obviously not available for nitrate retention.     

Impact of a ski basin on a mountain watershed

The input of heavy metals by automobile exhaust pollution associated with the ski basin activities is the primary concern of this paper. Stream, snowpack and lichen samples were collected and analyzed for Pb, Zn, and Cu. Some lichen samples were also analyzed for Ca, Mg, Na, K, Fe, and Mn, as well as Pb, Zn, and Cu. Snowpack samples from roadside areas demonstrated increased levels of Pb and Cu in comparison to areas up to 180 m from the road, but heavy metal levels at more remote areas were comparable to roadside levels. In all snow samples the heavy metals associated with the particulate matter was the major form of all inputs. Heavy metals in streams were also highly correlated with the particulate matter content. Heavy metal inputs to the watershed were greater than stream export, indicating an accumulation of heavy metals by the system. The forest canopy appears to be the major factor in the accumulation of heavy metals, probably due to better interception and impaction of the particulate matter by the canopy.     

ALES: a framework for land evaluation using a microcomputer

Abstract. ALES , the Automated Land Evaluation System, is a microcomputer program that allows land evaluators to build their own knowledge-based systems with which they can compute the physical and economic suitability of land map units, in accordance with the FAO's Framework for Land Evaluation. The economic suitability of a land mapping unit for a land utilization type is determined from the predicted annual gross margin per unit area. Increasing limitations result in increased costs of production, decreased yields, or both. Evaluators build decision trees to express inferences from land characteristics to land qualities, from land qualities to predicted yields, and from land qualities to overall physical suitability. A representative model is described.     

Structural characteristics of clay-dominated soils of a marsh and a palaeosol in a crossed diagram

Although the shrink‐swell phenomenon of clays has been thoroughly studied, the in situ relation of the shrinkage curve to the structure profile is rarely presented from the shrinkage limit to the liquid limit. We studied the consolidated structure of clay‐dominated (<2 μm) soils formed on ‘pseudo‐liquid’ marsh sediments in the ‘Marais de l’Ouest’ (France). The profiles were studied in a grassland field and in a sunflower field from unsaturated surface soils down to deeper, saturated, levels characterized by a very large water content (100% by weight). The consolidation states were quantified recording cone resistance (Qd) profiles using a dynamic penetrometer in successive seasons. These Qd profiles were compared with the associated wet density and gravimetric water‐content profiles. Two consolidation depths were evident, the surface soil and a 130‐cm deep palaeosol. The seasonal Qd profiles demonstrate the partial irreversibility of the consolidation peaks associated with the surface soil and with the palaeosol. The shrinkage properties were established through drying curves of undisturbed test samples. In the void ratio (e)‐water content (W) and water content (W)‐saturation index (Sr) diagrams, the profiles as a whole exhibit only one clay soil behaviour from their pseudo‐liquid to plastic to solid states. Each Qd profile is represented by a hyperbolic curve in the e/Qd diagram. Represented in a (e – W – Qd —Sr) crossed diagram, the vertical evolution of the successive profiles shows the soil structure behaviour from the initial pseudo‐liquid sediment to the consolidated soil. A simple cone resistance recording associated with gravimetric water‐content profiles, characterizes the evolution of structural layers of soils for the seasonal drying‐wetting cycles, for the over‐consolidation associated with the palaeosol, and also for the effect of ploughing.     

Use of a 6-steps microcosm for studying a wastewater discharge in a freshwater ecosystem: a multidisciplinary study

An experimental microcosm has been designed for simulating and studying impacts of a wastewater treatment plant (WTP) discharge on a freshwater/sediment ecosystem. The study was focused on the changes in biodiversity of benthic populations, especially bacteria and oligochaetes. Effluents were discharged in the Saône river, near Lyon (France) from a small treatment plant which treated domestic raw water by an activated sludge process. Freshwater and sediments were sampled in the Saône river upstream of the discharge point and placed in microcosms. Following the WTP discharge, physicochemical parameters of the overlying water column and sediments exhibited only a slight change, as compared to a reference. Characterization of the sediment bacterial populations was conducted with the Biolog and API systems. Strain identification and interpretation of data was difficult using thesetwo systems. Bacterial taxa in the sediments increased slightly below the WTP discharge. Gram negative strains dominated in the effluents, but G+ and G- bacteria were balanced in the sediments. Pseudomonas sp. and Bacillus sp., were the dominant strains. Invertebrate populations indicated an effect of the WTP discharge, with increasing of pollution resistant strains (Tubificidae) and disappearance of pollution intolerant strains such as Limnodrilus udekemianus and Quistadrilus multicoetosus. Taken as a whole, biological parameters indicated an environmental changes despite only slight changes in the physicochemistry of water. This experimental microcosm has proven to be a useful tool for studying impact of wastewater discharge on benthic populations.     

Stereospecificity of mushroom tyrosinase immobilized on a chiral and a nonchiral support

Mushroom tyrosinase was immobilized from an extract onto glass beads covered with the cross-linked totally cinnamoylated derivates of d-sorbitol (sorbitol cinnamate) and glycerine (glycerine cinnamate). The enzyme was immobilized onto the support by direct adsorption, and the quantity of immobilized tyrosinase was higher for sorbitol cinnamate, the support with the higher number of esterified hydroxyls per unit of monosacharide, than for glycerine cinnamate. The results obtained from the stereospecificity study of the monophenolase and diphenolase activity of immobilized mushroom tyrosinase are reported. The enantiomers L-tyrosine, DL-tyrosine, D-tyrosine, L-dopa, DL-dopa, D-dopa, L-alpha-methyldopa, DL-alpha-methyldopa, L-isoprenaline, DL-isoprenaline, L-adrenaline, DL-adrenaline, L-noradrenaline, and D-noradrenaline were assayed with tyrosinase immobilized on a chiral support (sorbitol cinnamate), whereas L-tyrosine, DL-tyrosine, D-tyrosine, L-dopa, DL-dopa, D-dopa, L-alpha-methyldopa, and DL-alpha-methyldopa were assayed with tyrosinase immobilized on a nonchiral support (glycerine cinnamate). The same Vmax(app) values for each series of enantiomers were obtained. However, the Km(app) values were different, the l isomers showing lower values than the dl isomers, whereas the highest Km(app) value was obtained with d isomers. No difference was observed in the stereospecificity of tyrosinase immobilized on a chiral (sorbitol cinnamate) or nonchiral (glycerine cinnamate) support.     

Photosynthesis of a scots pine shoot: Test of a shoot photosynthesis model in a direct radiation field

The photosynthetic light curves of eight Scots pine (Pinussylvestris L.) shoots, each with a different structure, were measured in a direct radiation field at different positions relative to the radiation beam. Using a model of shoot geometry, the irradiance distributions on the needle surface area of the same shoots were simulated in each position. Using measurements of shoot photosynthesis, the photosynthetic light curve for a needle surface area element (a small area on the needle surface) was estimated indirectly for each shoot. Shoot photosynthesis was then calculated from the estimated photosynthetic light response curve of a needle surface area element and the irradiance distribution on the surface area of needles. Calculated rates for shoot photosynthesis agreed well with the measured rates. The mean irradiance on the needle surface area was the major component causing variation in the light response of a shoot irradiated from different directions, but the shape of the irradiance distribution on the needle surface area had a considerably smaller effect.     

Vertical structure of evapotranspiration at a forest site (a case study)

The components of ecosystem evapotranspiration of a Norway spruce forest (Picea abies L.) as well as the vertical structure of canopy evapotranspiration were analyzed with a combination of measurements and models for a case study of 5 days in September 2007. Eddy-covariance and sap flux measurements were performed at several heights within the canopy at the FLUXNET site Waldstein-Weidenbrunnen (DE-Bay) in the Fichtelgebirge mountains in Germany. Within and above canopy fluxes were simulated with two stand-scale models, the 1D multilayer model ACASA that includes a third-order turbulence closure and the 3D model STANDFLUX. The soil and understory evapotranspiration captured with the eddy-covariance system in the trunk space constituted 10% of ecosystem evapotranspiration measured with the eddy-covariance system above the canopy. A comparison of transpiration measured with the sap flux technique and inferred from below and above canopy eddy-covariance systems revealed higher estimates from eddy-covariance measurements than for sap flux measurements. The relative influences of possible sources of this mismatch, such as the assumption of negligible contribution of evaporation from intercepted water, and differences between the eddy-covariance flux footprint and the area used for scaling sap flux measurements, were discussed. Ecosystem evapotranspiration as well as canopy transpiration simulated with the two models captured the dynamics of the measurements well, but slightly underestimated eddy-covariance values. Profile measurements and models also gave us the chance to assess in-canopy profiles of canopy evapotranspiration and the contributions of in-canopy layers. For daytime and a coupled or partly coupled canopy, mean simulated profiles of both models agreed well with eddy-covariance measurements, with a similar performance of the ACASA and the STANDFLUX model. Both models underestimated profiles for nighttime and decoupled conditions. During daytime, the upper half of the canopy contributed approximately 80% to canopy evapotranspiration, whereas during nighttime the contribution shifted to lower parts of the canopy.     

Development of a fluorescent latex immunoassay for detection of a spectinomycin antibiotic

There is a need to develop a rapid and sensitive method to detect spectinomycin residues in animal tissues. A latex fluorescent immunoassay was designed using reagents developed for this assay. The spectinomycin antibody was produced in sheep, and the immunoglobulin (IgG) was purified through a Protein G affinity column and was immobilized onto latex particles. Spectinomycin was labeled with 5-([4,6-dichlorotriazin-2-yl]amino)fluorescein (DTAF). The optimum assay conditions consisted of preincubating the latex-IgG with spectinomycin in buffer solutions or in bovine kidney extracts. DTAF-spectinomycin was added and was further incubated. The bound spectinomycin-DTAF/IgG-latex complex was separated by centrifugation at 4000 g for 10 min. The fluorescence signals of the unbound spectinomycin-DTAF in the supernatant were measured at 485/535 nm excitation/emission. The measured signals were directly proportional to the concentration of spectinomycin in the samples, and spectinomycin was detected at 0-100 ppb with minimum detectability of 5 ppb. The mean regression correlation of four trials in buffer was 0.936 when the % bound complex vs spectinomycin concentration was plotted. Analysis of the kidney extract spiked with 0-100 ppb spectinomycin had a regression correlation of 0.959. This assay provides a rapid screening method for low ppb detection of spectinomycin.     

Utilization of Sugarcane Compost as a Soil Amendment In a Tomato Production System

Sugarcane filtercake (a waste by-product of sugarcane processing) compost was evaluated as a partial substitute for inorganic fertilizer in a fresh-market tomato (Lycopersicon esculentum Mill.) crop production system. Plots receiving fertilization rates of 0, 50, or 100% (153N-134P- 280K, kg ha^?1) of a typical commercial application were amended with or without compost (188 t ha^?1). Tomato (cv. Sunny) seedlings were transplanted in the center of each raised bed. A randomized complete block experimental design was used with the six compost/fertilization treatments replicated four times. Plant height (22 days after transplanting), stem diameter and shoot weight (just after final harvest), fruit yields, and fruit size were measured for each plot. Plants grown with no fertilization were taller (22 days after transplanting) in plots amended with than without compost, but not at 50 or 100% fertilization rates. Plots that were amended with compost had plants with heavier shoots (kg/plant), thicker stems, higher total and early marketable fruit number and weight and larger fruit size than plots not amended with compost, regardless of fertilization rates. These results suggest that sugarcane filtercake compost can serve as a partial substitute for inorganic fertilizer while maintaining or improving tomato fruit yields and size.     

Using a Numerical Model to Track the Discharge of a Wastewater Treatment Plant in a Tidal Estuary

Along the coast of Maine, USA, there are numerous wastewater treatment plants that discharge their treated effluents into a river estuary which is shared by commercial fishing and shellfish harvesting. Occasionally, there can be failures or bypasses of treatment plants that lead to untreated or partially treated sewage flowing into shellfish harvesting waters. To prevent any toxic contamination of harvested shellfish, a prohibitive zone is established around the treatment plant where shellfish harvesting is prohibited. The U.S. Food and Drug Administration has conducted numerous dye studies on both coasts of the USA to determine these prohibitive zones, based on the guidelines of the National Shellfish Sanitation Program. In May 2010, the FDA conducted such a dye study at the Yarmouth, Maine wastewater treatment plant. The results are compared with a numerical coastal model that provides the velocity field for the currents around the treatment plant. This model includes a diffusion equation to simulate dye dispersion from a point source which is used to determine the prohibitive zone. The numerical model shows good correlation with the FDA dye study report and establishes a prohibitive zone for commercial harvesting in keeping with that of the FDA study. The benefits of the numerical model include sampling at thousands of locations simultaneously, seasonal changes in river volumes, and changes in plant discharge volumes.     

Evaluation of a Quasi-steady-state Respiration Test in a Full-scale Biopile

A quasi steady state respiration test based on Fick’s law with a correction term for advective flux, for estimating petroleum hydrocarbon degradation rates, was evaluated in a full-scale (3,000 m³) biopile study. A contaminated clayey sand soil with an average TPH content of 1,421?±?260 mg kg^?1 soil was treated in a biopile with a fixed venting and heating system. Temperature in the biopile ranged from 12.1 to 36.6°C and soil water content from 15.2 to 35.8 m³ H₂O m^?3 soil. Oxygen concentrations in the biopile showed a rapid decrease with depth, before venting and reached constant atmospheric concentration during venting. Measured oxygen consumption in the biopile ranged from ?0.04 to ?0.68 mol O₂ m^?3 soil day^?1. Average oxygen consumption rates calculated with the quasi-steady-state method were significantly (P?<?0.05) lower then the oxygen consumption rates calculated with the transient method. It was suggested that the oxygen diffusion was underestimated by the diffusivity models used and that further research is needed to determine relative effective diffusion coefficients in biopiles. Although both respiration testing and petroleum hydrocarbon concentration showed a decrease of oxygen consumption in time, the estimated degradation rate was low compared to the actual decrease in petroleum hydrocarbon concentration. Additional work will have to be done to acquire a more precise knowledge of the relationship between respirometrically determined degradation rates and the actual change in petroleum hydrocarbon concentration in the soil.     

A contribution to environmental control in a glasshouse by a computer

The environmental conditions of plants grown in a glasshouse were controlled by a minicomputer (IBM-Series 1). The simulation model thus developed provides better analyses of the relationship between yield increase and control of environmental factors.The glasshouse used was in several sections, with all the necessary devices for controlling environmental conditions. Two different climatic regimes were stimulated in order to find a better agreement of simulated values with experimental data.The computer used can be applied to a system comprising several glasshouses where different crops are grown.     

旋流排沙渠道排沙特性试验

旋流排沙渠道是基于旋转水流的特点提出的一种水沙分离新技术,为明确不同来流条件对旋流排沙渠道排沙特性的影响,该研究通过物理模型试验探究了来流流量、来流流速、泥沙级配及下游渠道水力条件下旋流排沙渠道的排沙、余沙及淤沙特性,分析了其截沙率变化规律。结果表明,当来流条件改变时,旋流排沙渠道的排沙特性发生规律性变化,在来流流量增加或流速增加或来沙中值粒径减小情况下,旋流排沙渠道的排沙量减小,余沙量增加,其中改变来流流量对截沙率的影响最为明显,最大变幅为16.3%。不同水沙条件下0.075～0.315 mm细颗粒泥沙的排沙量及余沙量均存在较大差异,且下游渠道余沙均以该粒径区间的泥沙为主,而粒径>0.315～3.0 mm泥沙的排除效果受水沙条件改变的影响极小。排沙洞内泥沙淤沙量随来流量和泥沙中值粒径的增加而增加,而随流速的增加而减少,但各水沙条件下最大淤沙量仅为来沙量的2.6%。在渠道下游设置挡水板后,旋流排沙渠道的排沙性能得到进一步提升,提高了粒径>0.16～0.315 mm泥沙的排除效果,与不设挡水板相比截沙率增加了4.6个百分点,也改善了排沙洞内的泥沙淤积问题。旋流排沙渠道具有良好的泥沙分选效果,能有效排除高含沙水流中的粗颗粒泥沙（在不同水沙条件下最小截沙率为76.9%）,从而减少了泥沙对渠道下游设施的影响,因此工程中可通过优化流量、流速、下游水力条件等提升旋流排沙渠道的排沙特性。研究明确了不同水沙条件下旋流排沙渠道的适用性,成果可为其在工程中的设计和应用提供参考。     

Dynamics of a black bear population within a desert metapopulation

Understanding metapopulation dynamics in large carnivores with naturally fragmented populations is difficult because of the large temporal and spatial context of such dynamics. We coupled a long-term database of visitor sighting records with an intensive 3-year telemetry study to describe population dynamics of recolonization by black bears (Ursus americanus) of Big Bend National Park in Texas during 1988-2002. This population, which occurs within a metapopulation in western Texas and northern Mexico, increased from a single pair of known breeding-age animals in 1988 to 29 bears (including 6 females of breeding age) in March 2000 (λ = 1.25/year). A migration and dispersal event in August-December 2000 reduced the population to 2 adult females and as few as 5-7 individuals. One-way movement distances from the study area during this event averaged 76 km for females (n = 7) and 92 km for males (n = 4), and 3 animals conducted migrations of at least 154, 178, and 214 km, respectively. Our observations exemplify the importance of stochastic events on demographics of small populations and highlight the potential scale of bear movement among montane islands of southwestern North America. They also provide insight into the use of dispersal data in parameterizing metapopulation models for large carnivores.     

Losses of Soil Carbon upon a Fire on a Drained Forested Raised Bog

We studied the consequences of a fire that affected 29 ha of a drained forested raised bog in Tver oblast, Central European Russia. The drainage network consisted of open 1-m-deep ditches with 60 to 160 m ditch spacing. The groundwater level (GWL) varied within the studied drained bog. We used the method of assessing the loss of soil carbon (C) based on the difference between the ash concentration in the burnt peat of the upper layer and underlying unburnt layers. The carbon loss was higher near the drainage ditches than in the sites remote from ditches. The sample median values of carbon loss (kg C/m²) were estimated at 0.37 near the drainage ditches and at 0.22 for the remote sites with a distance of 160 m between ditches. They increased to 2.23 and 0.79 near and far from the drainage ditches for 106 m ditch spacing, and ranged from 1.13 to 2.10 near the drainage ditches and were equal to 0.45 at the remote sites for 60 m ditch spacing. The maximum loss of C was at the bog margin with the 70-cm-deep GWL; the sample median was equal to 2.97 kg C/m². The results obtained for C loss from the wildfire on the raised bog agree with the estimates obtained by other authors (1.45–4.90 kg C/m²) and confirm the importance of taking such loss into account in the estimates of the carbon budget of peat soils (Histosols).