Changes in populations of the eyespot fungi Tapesia yallundae and T. acuformis under different fungicide regimes in successive crops of winter wheat, 1984–2000

Effects of regular treatments with the fungicides carbendazim and prochloraz applied to whole plots divided into subplots with different initial population mixtures of carbendazim-sensitive or carbendazim-resistant Tapesia yallundae or T. acuformis were studied in successive crops of winter wheat from 1984/85 to 1999/2000. In unsprayed and carbendazim-sprayed whole plots, a stable coexistence of about 50% each of T. yallundae and T. acuformis developed within five seasons, but in whole plots sprayed with prochloraz or prochloraz plus carbendazim, the proportion of T. acuformis increased to > 80%. A discrete time difference equation model was derived from knowledge of the biology of eyespot and competition theory to describe the population changes. The model was fitted to the data from treatments where coexistence occurred [subplots in unsprayed (1985–92) and carbendazim-sprayed (1985–89) whole plots], using nonlinear least squares regression. The optimized value of the resource overlap coefficient was small, suggesting niche differences between the two species. Populations were nearly 100% carbendazim-resistant in carbendazim-sprayed whole plots by July 1985 (one season) and in whole plots sprayed with prochloraz plus carbendazim by July 1986 (two seasons). In prochloraz-sprayed whole plots, the proportion of carbendazim-resistant isolates decreased more rapidly than in unsprayed whole plots in the 1980s, but by July 1992 a shift in populations in unsprayed and prochloraz-sprayed whole plots towards predominantly carbendazim-resistant strains had occurred.     

Fungicide resistance status in French populations of the wheat eyespot fungi Oculimacula acuformis and Oculimacula yallundae

Eyespot, caused by Oculimacula acuformis and Oculimacula yallundae, is the major foot disease of winter wheat in several European countries, including France. It can be controlled by chemical treatment between tillering and the second node stage. The fungicides used include antimicrotubule toxicants (benzimidazoles), inhibitors of sterol 14α‐demethylation (DMIs) or of succinate dehydrogenase (SDHIs), the anilinopyrimidines cyprodinil and the benzophenone metrafenone. Since the early 1980s, a long‐term survey has been set up in France to monitor changes in the sensitivity of eyespot populations to fungicides. Resistance to benzimidazoles has become generalised since the early 1990s, in spite of the withdrawal of this class of fungicides. In the DMI group, resistance to triazoles is generalised, whereas no resistance to the triazolinethione prothioconazole has yet developed. Resistance to the imidazole prochloraz evolved successively in O. acuformis and O. yallundae and is now well established. Specific resistance to cyprodinil has also been detected, but its frequency has generally remained low. Finally, since the early 2000s, a few strains of O. yallundae displaying multidrug resistance (MDR) have been detected. These strains display low levels of resistance to prothioconazole and SDHIs, such as boscalid. Knowledge of the spatiotemporal distribution in France of O. acuformis and O. yallundae field strains resistant to fungicides allows resistance management strategies for eyespot fungi in winter wheat to be proposed.© 2012 Society of Chemical Industry     

Species and Mating-Type Distribution of Tapesia yallundae and T. acuformis and Occurrence of Apothecia in the U.S. Pacific Northwest

ABSTRACT Eyespot of wheat is caused by the discomycete fungi Tapesia yallundae and T. acuformis. T. yallundae is considered the most important causal agent of the disease in this region but no apothecia of either species have been found in the U.S. Pacific Northwest (PNW). Two compatible isolates of T. yallundae from the PNW were used to inoculate a field plot in the fall of 1998 and apothecia developed in the spring and fall of 2000 on standing wheat stubble. In the spring of 2000, wheat stubble from eight naturally infected fields was examined for the presence of apothecia of T. yallundae and T. acuformis. Apothecia of T. acuformis were found in two fields but no apothecia of T. yallundae were found. This is the first report of apothecia of the eyespot pathogens occurring in the PNW. Species and mating-type distribution of T. yallundae and T. acuformis in the PNW were determined from 817 isolates collected from diseased wheat over 3 years at spatial scales ranging from within fields to across states. In all, 460 isolates were identified as T. yallundae and 357 isolates were identified as T. acuformis with MAT1-1/MAT1-2 ratios not significantly different from 1:1 based on chi(2) tests at most scales tested. The apparent increase in frequency of T. acuformis from previous surveys may indicate a shift in the predominant species causing eyespot. The occurrence of apothecia under field conditions, along with the widespread distribution of mating types of both species, suggests that sexual reproduction may be occurring in both species.     

Development of apothecia ofTapesia yallundae in contrasting populations selected by fungicides

Apothecia of the eyespot fungus,Tapesia yallundae, were found on 0–18% of straws in plots of wheat stubble in February–March 1994. The fungicides carbendazim, prochloraz or carbendazim plus prochloraz had been applied repeatedly to the same plots in each of the previous 9 years in which successive wheat crops had been grown. The factors most strongly correlated with the incidence of apothecia were the incidence and severity of eyespot in the preceding wheat crop and the frequency of carbendazim-resistant W-type fungus in populations recovered from that wheat crop. Plots treated with carbendazim, which had previously had more disease and more resistance to carbendazim in the pathogen population relative to untreated plots, therefore yielded most apothecia. Plots treated with prochloraz, which had selected for predominantly R-type fungus and decreased eyespot, yielded few apothecia. Single-ascospore isolates were all of the W-type and were more frequently carbendazim-sensitive than expected, except those from plots treated only with carbendazim. None showed decreased sensitivity to prochloraz. The implications of applying fungicides regularly for controlling eyespot on the capability of the eyespot fungus for genetic variation through sexual reproduction are discussed.     

Evaluation of fungicides for control of eyespot disease and yield loss nationships in winter wheat

Following the discovery of resistance to benzimidazole fungicides in the cereal eyespot pathogen Pseudocercosporella herpotrichoides in the UK in 1981, and an initial in vitro screen to select the fungicides with greatest activity against the pathogen, 40 field experiments were carried out between 1983 and 1986 to evaluate alternative fungicides for control of eyespot. At the majority of experimental sites, benomyl-resistant strains of the pathogen were present, and carbendazim did not control eyespot. Prochloraz was the most effective fungicide, reducing the eyespot index by 30–60%. There was no extra benefit from adding carbendazim to prochloraz. Flusilazole was almost as effective as prochloraz, but other fungicides had little or no effect. At sites with a high incidence of eyespot, prochloraz, with or without the addition of carbendazim, generally gave the largest yield increase. The mean yield increases each year were in the range 0·36–0·85 t/ha, and the greatest yield increase at any site was 2·27 t/ha. Most other fungicides increased yield, but carbendazim did not from 1984 to 1986. There were also yield increases at many sites with a low incidence of eyespot. Yield increases were associated with increases in thousand-grain weight at the majority of sites, but in only a few instances were there associated increases in specific weight. Prochloraz application at GS30-31 was cost effective at 71% of sites. At most sites, in regression of yield on eyespot, eyespot accounted for less than 25% of the variance in yield. The mean relationship between severe eyespot lesions and yield loss was such that each 1% increase in the percentage of tillers affected by severe eyespot was associated with a yield loss of 0·21 %. There was a significant positive correlation between eyespot at GS75 and GS30-31, and between yield increase from prochloraz treatment (at GS30-31) and eyespot at GS75, but not between yield increase and eyespot at GS30-31. The ADAS threshold for fungicide application of 20% tillers affected at GS30-31 was a reliable indicator of the cost-effectiveness of treatment at 60% of sites.     

Population Genetic Structure of Tapesia acuformis in Washington State

ABSTRACT Eyespot of wheat is caused by Tapesia yallundae and T. acuformis. Historically, T. yallundae has been considered the more important causal agent of the disease in Washington state and consists of a large homogeneous population with a genetic structure consistent with both sexual and asexual reproduction. T. acuformis has increased significantly in Washington in the past 10 years and apothecia were found recently under natural field conditions, indicating that T. acuformis may have a more important role in eyespot of wheat than previously was thought. To determine the genetic structure of T. acuformis in Washington, 141 single conidial isolates were sampled from four subpopulations in the eastern wheat-growing region of the state. Isolates were scored for mating type and six amplified fragment length polymorphism markers. All markers segregated in a 1:1 ratio and were determined to be unlinked based on genetic analysis of 24 progeny from an in vitro cross. No significant differences in allele frequencies (0.127 < P < 0.809) were found among individual loci across the four subpopulations and over all loci based on contingency table analysis of the log-likelihood ratio statistic G(2). Likewise, no overall differences between subpopulations were detected using the population differentiation statistic theta (theta = -0.004, P = 0.537). Random mating could not be rejected within each subpopulation or for the combined data using clone-corrected data sets based on (i) 1:1 ratio of mating-type, (ii) multilocus gametic disequilibrium analyses (index of association), (iii) phylogenetic analyses (parsimony tree length permutation test), and (iv) genotypic diversity analyses. T. acuformis has a genetic structure similar to that of sympatric populations of T. yallundae in Washington, with both sexual and asexual reproduction contributing to the structuring of this species.     

Fungicide resistance status and chemical control options for the brassica pathogen Pyrenopeziza brassicae

Pyrenopeziza brassicae causes leaf spot disease of Brassicaceae in Europe/Oceania (lineage 1) and North America (lineage 2). In Europe, fungicides currently used for disease management are sterol 14α-demethylase (CYP51) inhibitors (azoles), quinone outside inhibitors (QoIs), and succinate dehydrogenase inhibitors (SDHIs); methyl benzimidazole carbamates (MBCs) are no longer applied. In this study, in vitro screening revealed European populations (collected 2018–2020) had shifted towards decreased azole sensitivity, but the North American population (2014–2016) was highly sensitive. Genotyping revealed CYP51 substitutions G460S or S508T were prevalent in European populations, often with a CYP51 promoter insert. Compared to wildtype CYP51 isolates, those with G460S plus an insert (44/46/151/210/302 bp) were c.25–32-fold and c.50-fold less sensitive to tebuconazole and prochloraz, respectively; those with S508T plus an insert (44/46/151/233 bp) were c.9–15-fold and c.25–40-fold less sensitive to tebuconazole and prochloraz, respectively. Selection for G460S (quantified via pyrosequencing) under different fungicide regimes was investigated in UK field trials, but G460S levels were high (c.76%) before treatment, so further selection during the trials was unclear. Despite the high G460S frequency and low disease pressure, yield data indicated measurable benefit for both azole- and non-azole-based programmes. In vitro screening against the MBC carbendazim showed European populations were predominantly moderately resistant/resistant; the North American population was sensitive. European and North American populations were sensitive to QoI (pyraclostrobin) and SDHI (penthiopyrad) fungicides. Results support an azole plus QoI/SDHI mixing partner for robust disease control and decreased risk of resistance, with continued sensitivity monitoring to ensure optimal strategies are deployed.     

Evolution of fungicide resistance in the cereal eyespot fungi Tapesia yallundae and Tapesia acuformis in France

Field isolates of the cereal eyespot pathogen can be divided into two groups which are now considered as two species: Tapesia yallundae and Tapesia acuformis. In both species the first case of acquired resistance was observed with benzimidazole fungicides in the early 1980s. At the same time, a number of sterol C-14 demethylation inhibitors (DMIs), such as the imidazole prochloraz and several triazoles, including flusilazole, were introduced. Surprisingly T. acuformis appeared intrinsically resistant to the triazole derivatives in comparison to T. yallundae, but both species were sensitive to prochloraz. The intensive use of these DMIs led to the development of acquired resistance towards triazoles in T. yallundae and towards prochloraz in T. acuformis. Today all the strains in both species appear equally sensitive to the anilinopyrimidine cyprodinil. ©1997 SCI     

Differentiation and quantification of the cereal eyespot fungi Tapesia yallundae and Tapesia acuformis using a PCR assay

Isolates of Tapesia yallundae and Tapesia acuformis were subjected to Random Amplified Polymorphic DNA (RAPD) assay. Amplification products common to isolates of either species were cloned and primers were generated from each sequence for use in conventional PCR. The primer pair derived from a T. yallundae specific RAPD marker amplified a product only from DNA of T. yallundae isolates and not from DNA of a range of other fungal species associated with the stem base disease complex of cereals. Similarly, the primer pair generated from a T. acuformis -specific RAPD marker amplifed a product only from DNA of T. acuformis isolates. Quantitative assays were developed for both species of Tapesia from these primer pairs, using competitive PCR . Competitive PCR was used to determine the level of colonization of seedlings by each species in glasshouse- and field-inoculated cereal hosts and results compared to those for conventional seedling disease assessment.     

Sensitivity of Pseudoeevcosporella herpotriehoides to the fungicide prochloraz

In a survey carried out in 1984, isolates of the eyespot fungus, Pseudocercosporella herpotrichoides , from cereals in the UK, Denmark and West Germany were tested in vitro for sensitivity to the fungicide prochloraz. Of 194 isolates tested, 191 showed no growth on agar amended with prochloraz at 2 μg/ml or more. The mean concentration of prochloraz calculated to inhibit colony growth by 50% (IG50) was 0 44+0−010 μg/ml. The three isolates that grew at 2 μg/ml displayed weak colony development and were clearly disrupted by the presence of the fungicide. R-type isolates appeared more sensitive to prochloraz than W-type isolates. Comparisons with similar data for isolates obtained from other years revealed no consistent change with time in sensitivity to prochloraz.     

Resistance Risk Assessment of Cereal Eyespot, Tapesia Yallundae and Tapesia Acuformis, to the Anilinopyrimidine Fungicide, Cyprodinil

Eyespot pathogens, Tapesia yallundae and Tapesia acuformis, were isolated from two trial sites in the UK over several years. Both sites were treated with 2 applications per year of cyprodinil (a new anilinopyrimidine fungicide), prochloraz and a mixture of cyprodinil with prochloraz. One trial site was exposed to cyprodinil for 3 years, and the second for a total of 11 years, including 5 years before the trial was initiated. Control of eyespot and sensitivity to cyprodinil were monitored. During the first 3 years of the trial, disease control with all fungicide treatments ranged from 43% to 82%. At the site, where the trial was extended for a further 3 years, control then began to decline but no practical resistance was detected. The decline in control by both fungicides suggests that factors other than reduced sensitivity might be involved. Field isolates of both T. yallundae and T. acuformis with reduced sensitivity to cyprodinil were found predominantly in plots treated with cyprodinil. A reduction in sensitivity to cyprodinil was identified in the population from cyprodinil-treated plots in two years out of six, and in the population from mixture plots in the final year. No obvious trends could be identified and in-vivo studies showed control of most isolates with reduced sensitivity could be regained by increasing the dose to one tenth of the recommended field rate. Analysis of progeny from sexual crosses involving a sensitive isolate and a field isolate with an ED₅₀ value higher than the baseline sensitivity range indicated that a single gene controlled the reduction in sensitivity to cyprodinil in one T. yallundae isolate. There is clearly a resistance risk in eyespot to cyprodinil. The reduction in sensitivity is monogenic in inheritance and at a significant level in some isolates, but any shift in sensitivity in field populations has so far been gradual.     

Development of Oculimacula yallundae and O. acuformis (eyespot) lesions on stems of winter wheat in relation to thermal time in the UK

Relationships between development of eyespot, caused by Oculimacula yallundae (OY) or O. acuformis (OA) on stems of winter wheat (cv. Avalon), and thermal time (°C days after sowing) were investigated in field experiments in 1985/86, 1986/87 and 1987/88 (two experiments). In all experiments, the incidence and severity of stem eyespot (uninoculated plots, OY- and OA-inoculated plots) were linearly related to accumulated thermal time after sowing. There were ca. 600–800°C days from the time of the first sample when eyespot lesions were recorded on stems to the time when maximum eyespot incidence or severity was recorded. Relationships between stem eyespot incidence or severity and thermal time differed between seasons, with more severe eyespot in 1986/87 and 1987/88 than 1985/86. Both the severity and volume of stem lesions were initially greater in OY-inoculated plots than OA-inoculated plots in spring but differences were less by harvest in all seasons. The percentage of plants with stems colonized by OY or OA over all plots (including uninoculated) showed a consistent pattern in 1986/87 and 1987/88 (two experiments), with the percentage colonized by OY greater initially and the percentage colonized by OA gradually increasing with time towards harvest.     

水稻恶苗病菌田间抗咪鲜胺菌株的适合度及其交互抗性

恶苗病是水稻生产上较为严重的种传真菌病害,咪唑类广谱内吸性杀菌剂咪鲜胺是目前防治该病害的主要药剂。以对咪鲜胺抗性及敏感的田间水稻恶苗病菌为试材,研究了其适合度及对几种常用杀菌剂的交互抗性。结果显示:抗性菌株的抗药性可稳定遗传,其温度敏感性与敏感菌株无明显差异,部分抗性菌株在菌丝生长速率、产孢量、孢子萌发率和致病力方面显著高于田间敏感菌株;咪鲜胺与三唑类及2-氰基丙烯酸酯类杀菌剂之间均无交互抗性。研究表明,对咪鲜胺产生抗性的水稻恶苗病菌具有较强的适合度,在田间自然条件下有可能形成优势群体,因此需合理轮换使用不同作用机制的杀菌剂,以延缓其抗药性的发展。     

Target and non-target site mechanisms of fungicide resistance and their implications for the management of crop pathogens

Fungicides are indispensable for high-quality crops, but the rapid emergence and evolution of fungicide resistance have become the most important issues in modern agriculture. Hence, the sustainability and profitability of agricultural production have been challenged due to the limited number of fungicide chemical classes. Resistance to site-specific fungicides has principally been linked to target and non-target site mechanisms. These mechanisms change the structure or expression level, affecting fungicide efficacy and resulting in different and varying resistance levels. This review provides background information about fungicide resistance mechanisms and their implications for developing anti-resistance strategies in plant pathogens. Here, our purpose was to review changes at the target and non-target sites of quinone outside inhibitor (QoI) fungicides, methyl-benzimidazole carbamate (MBC) fungicides, demethylation inhibitor (DMI) fungicides, and succinate dehydrogenase inhibitor (SDHI) fungicides and to evaluate if they may also be associated with a fitness cost on crop pathogen populations. The current knowledge suggests that understanding fungicide resistance mechanisms can facilitate resistance monitoring and assist in developing anti-resistance strategies and new fungicide molecules to help solve this issue. © 2023 Society of Chemical Industry.     

Incidence of eyespot in winter wheat and quantification of the fungi Oculimacula acuformis and O. yallundae in Lithuania

Journal of Plant Diseases and Protection - Eyespot, caused by Oculimacula acuformis and O. yallundae, is one of the most damaging diseases in areas, including Lithuania, where mild and damp autumn...     

Genetic correlations in resistance to morpholine and piperidine fungicides inPyrenophora teres populations

Highly significant genetic variation (P<0.001) in resistance to the morpholine fungicides fenpropimorph, tridemorph and dodemorph and the piperidine fungicide, fenpropidin was found in different populations ofPyrenophore teres in North America and Europe which had not been previously exposed to these fungicides. Resistance phenotypes were continuously distributed for each fungicide in each population. Cross resistance relationships were determined by estimating genetic correlation coefficients in resistance to all pairwise combinations of fungicides. The majority of the correlation coefficients were highly positive for all fungicide combinations in all populations; eight of 36 (22%) coefficients were not significantly different from 1 (P>0.05). This result is consistent with the hypothesis that many of the same genes, or genes in gametic disequilibrium, control resistance to more than one fungicide in most populations ofP. teres and that these fungicides comprise a single cross resistance group. Three of 36 (8%) correlation coefficients were not significantly different from 0 (P>0.05) indicating that, in these populations, independent genes controlled resistance to these fungicides. The results of this study indicate that although most of the same genes control resistance to morpholine and piperidine fungicides inP. teres, differences in frequencies of these genes among populations can result in different cross resistance relationships from one population to another.     

中国华北地区瓜类尖孢镰刀菌对咪鲜胺的敏感性及抗药突变株生物学性状研究

为明确中国华北地区瓜类尖孢镰刀菌Fusarium oxysporum Schl.对咪鲜胺的抗药性现状及抗药突变株的生物学性状,采用菌丝生长速率法,分别测定了采自北京、山东、河北等地未使用过咪鲜胺的112株瓜类尖孢镰刀菌对咪鲜胺的敏感性,并通过药剂驯化的方法获得尖孢镰刀菌抗咪鲜胺突变株。结果表明:咪鲜胺对112株瓜类尖孢镰刀菌的平均EC50值为（0.030 1±0.030 4）μg/mL,菌株频率呈连续单峰曲线分布,未发现敏感性明显下降的亚群体,因此,可将该EC50值作为瓜类尖孢镰刀菌对咪鲜胺的敏感基线。药剂驯化共获得7株抗咪鲜胺突变株,其抗性倍数介于6.2~26.8之间;突变株在菌丝生长速率、菌丝干重和致病力等方面均明显低于亲本菌株,差异显著;仅突变株HG13052701-R1的抗药性可以稳定遗传,其他6株抗咪鲜胺突变株的抗药性均不能稳定遗传。室内交互抗性测定结果表明,咪鲜胺仅与戊唑醇之间有交互抗性,与多菌灵和齅霉灵之间均无交互抗性关系。研究表明,瓜类尖孢镰刀菌在药剂选择压下可以形成抗咪鲜胺群体,具有低等抗药性风险。     

稻田土壤8种真菌对4种杀菌剂的敏感性分析

基于ITS-5.8s rDNA区序列,初步鉴定了浙江大学试验基地稻田土壤的8种常见真菌。采用菌丝生长速率法测定了井冈霉素、多菌灵、咪鲜胺和三唑酮4种常用杀菌剂对这8种土壤真菌的抑菌活性,以及多菌灵与咪鲜胺混用对禾柄锈菌、黑曲霉和长枝木霉3种真菌菌丝生长的抑制作用。结果表明:8种真菌对咪鲜胺最敏感,EC50值在0.091~3.1 mg/L之间;多菌灵的EC50值在0.15~1.8 mg/L之间;三唑酮的EC50值在0.57~8.5 mg/L之间;井冈霉素的敏感性最低,EC50在12~94 mg/L之间。由4种杀菌剂的SSDs曲线分析结果得出,不同真菌对杀菌剂敏感性存在显著差异。当多菌灵与咪鲜胺按其EC50值分别以体积比3∶2、1∶1和7∶3混用时,增效系数分别为1.615、1.039和1.042,表现出一定的协同或相加作用。本研究结果为进一步阐明杀菌剂对稻田生态系统真菌群落的生态效应及杀菌剂的科学合理使用提供了重要依据。     

Benzimidazole resistance in Pseudocercosporella herpotrichoides: results of ADAS random surveys and fungicide trials in England and Wales, 1982–19841

Surveys of 59 and 528 randomly selected winter wheat and winter barley crops in 1982 and 1983 respectively, showed that benzimidazole-resistant strains of the eyespot fungus (Pseudocercosporella herpotrichoides) were common and widespread. The frequency of occurrence of resistant isolates, both in 1982 and 1983. was positively correlated with the number of benzimidazole fungicide applications since 1975. Resistance was much more frequent in R-type than in W-type strains of P. herpotrichoides. Fungicides or fungicide mixtures, applied to winter wheat at growth stage (GS) 31, were compared for control of eyespot at six sites in 1983 and one in 1984 where benzimidazole-resistant strains were readily detected prior to spraying. Carbendazim alone gave no control of eyespot and in some trials actually increased disease levels compared with the unsprayed control. Prochloraz, either alone or in mixture with carbendazim, was the most effective fungicide giving a moderate control of eyespot (33–42% reduction) and cost-effective yield increases. DPX-II6573, tested only in the 1984 trial, was as effective as prochloraz. The practical implications of these findings are discussed.