Identification and characterization of fungi associated with internal wood lesions and decline disease of willow and poplar trees in Iran

During the study of fungal trunk pathogens associated with urban trees decline in Shiraz (Iran), a serious decline of willow and poplar trees was observed. Therefore, an investigation was conducted on these trees in some areas of this city during spring and summer 2012 and 2013, to determine the main fungal trunk pathogens associated with these ornamental plants. Plant materials were collected from trees exhibiting disease symptoms such as yellowing, shoot canker, shoot dieback, defoliation and internal wood necrosis and decayed wood. Fungal isolations were made from discoloured or decayed wood tissue onto 2% malt extract agar (MEA) amended with streptomycin sulphate. Nine species, Fomes fomentarius, Diplodia seriata, Lasiodiplodia theobromae, Dothiorella sarmentorum, Neoscytalidium hyalinum, Diatrype whitmanensis, Phaeoacremonium rubrigenum, P. aleophilum and P. parasiticum, were identified based on morphology and DNA sequence comparisons. Pathogenicity tests were performed on detached shoots of willow and poplar trees under greenhouse conditions. Lasiodiplodia theobromae caused the longest lesions on willow. On poplar shoots, the longest lesions were caused by P. parasiticum. Diplodia seriata produced the smallest lesions on both woody hosts. First reports from willow wood include P. parasiticum, P. rubrigenum, D. whitmanensis, L. theobromae, D. seriata and N. hyalinum, while new reports from poplar wood include P. parasiticum and Do. sarmentorum. Based on our knowledge, this is also the first report of D. whitmanensis in Iran.     

Identification and characterization of bacterial strains associated with diseased oak trees in Northern Iran

Oak decline syndrome is characterized by periodic occurrences of decline and death of oaks over widespread areas. An outbreak of a new emerging disease on oak trees was reported in the Hyrcanian forest of Iran (Mazandaran and Golestan provinces) that showed stem bleeding and canker symptoms. Bacterial isolates were characterized through biochemical and physiological tests, protein electrophoresis, DNA fingerprinting (rep‐PCR, ERIC and BOX primers) and sequencing of 16S rRNA and MLSA (multilocus sequencing analysis) for housekeeping genes (gyrB, infB and atpD). A complex community of the genus Brenneria spp. (Brenneria goodwinii, Brenneria roseae subsp. roseae, Brenneria sp. and Brenneria nigrifluens) and a few isolates in the genus Gibbsiella were identified as major groups involved. Isolate differentiation was more accurate using concatenated partial gene sequences within the main groups. All bacterial isolates showed hypersensitivity reactions (HR) on Pelargonium leaves (Pelargonium × hortorum). Pathogenicity studies of different Brenneria and Gibbsiella strains revealed that they have potential to cause the disease in oak seedlings and devastating oak canker and stem bleeding symptoms in northern Iran. Due to the presence of several potentially pathogenic agent(s) associated with the oak decline, identification of the principal agent(s) is of major interest. To our knowledge, this is the first report of potentially pathogenic bacteria associated with oak bleeding and canker in Iran.     

Phytophthora alticola and P. boodjera associated with decline of young Eucalyptus smithii trees in Uruguay

Eucalyptus production mainly destined to cellulose pulp production has expanded strongly in the last 30 years in Uruguay. Eucalyptus smithii has recently emerged as a promising species for cellulose pulp production. However, an average of 40% of young trees die during the first and second summer of post-planting. In this study, 32 Phytophthora isolates were obtained from 132 E. smithii young trees with root and collar rot symptoms, confirming the association of Phytophthora to E. smithii decline. Based on phylogenetic analysis of ITS, TUB2, cox1 and HSP90 gene regions and phenotypical characteristics, two species belonging to the genera Phytophthora clade 4 were identified, P. alticola (96%) and P. boodjera (4%). Tested isolates of both species significantly reduced both shoot and root dry weights of inoculated E. smithii seedlings compared to control plants. To our best knowledge, this is the first time that P. alticola and P. boodjera are recovered from young symptomatic E. smithii trees in commercial plantations as well as the first time these species are found in the Americas.     

Brenneria spp. and Rahnella victoriana associated with acute oak decline symptoms on oak and hornbeam in Iran

Decline diseases of forest trees are complex syndromes not attributable to single causal factors. In Iran, symptoms of decline disease have been observed in a number of native forest species including Quercus castaneifolia (chestnut‐leaved oak), Q. brantii (Persian oak) and Carpinus betulus (hornbeam). The symptoms are prevalent in the northern forests and the Zagros mountain forests. There are parallels between the disease in Iran and acute oak decline (AOD) reported in the UK, specifically the presence of weeping cankers, which have been attributed to a polybacterial complex wherein Brenneria goodwinii is considered a key necrogen. Based on the AOD symptomatology, and as a first step towards discovering potential causal agents of the stem weeping symptoms of affected trees in Iran, necrotic tissues were tested primarily for the presence of B. goodwinii. Symptomatic Q. castaneifolia and C. betulus from the Mazandaran Province and symptomatic Q. brantii from Kohgiluyeh and Boyerahmad Province were sampled. Isolation and culture on a selective medium yielded uniform bacterial colonies. Isolates were characterized using phenotypic and genotypic (DNA sequencing) tests. The isolates were phenotypically identical to members of Pectobacteriaceae and Yersiniaceae, specifically Brenneria and Rahnella spp. The nucleotide sequences of the 16S rRNA and housekeeping genes gyrB, infB and atpD (MLSA) amplified via PCR demonstrated that the isolates from the trees in Iran were indeed B. goodwinii, B. roseae subsp. roseae, Rahnella victoriana and an unknown species of Brenneria. Most bacteria isolated from non‐symptomatic trees were Gram‐positive, and Pseudomonas spp. were dominant, but bacterial species isolated from the diseased trees were not detected in healthy trees. Hypersensitivity response tests were positive, but inoculation on saplings was more variable with internal necrosis developing only once in the test period. Therefore, further testing is required. This is the first report of the incidence of B. goodwinii, B. roseae subsp. roseae, R. victoriana and Brenneria sp. associated with acute oak decline‐like symptoms on Q. castaneifolia, Q. brantii and C. betulus across the western forests of Iran and in the world.     

Wood destroying fungi in Iran

This paper gives information on 76 species of wood destroying fungi, collected in Iranian forests and from logs and board in sawmills. The majority of the records are new and are mentioned here for the first time.     

Effects of oleoresins and monoterpenes on in vitro growth of fungi associated with pine decline in the Southern United States

As a means of exploring pine resistance to root disease and declines, the effects of host plant secondary metabolites on the growth of root colonizing fungi associated with three diseases/declines of southern pines – loblolly pine decline, littleleaf disease and annosum root rot were tested. The associated fungi –Leptographium huntii, L. serpens, L. terebrantis, L. procerum, Heterobasidion annosum and Phytophthora cinnamomi– were grown in saturated atmospheres or in direct contact with, pure monoterpenes and crude oleoresin collected from the four southern pines (Pinus taeda, P. eschinata, P. palustris and P. elliotti) for 7 day. Fungal growth was measured at 3, 5 and 7 day. Root‐infecting fungi differed significantly in sensitivity to crude oleoresin and pure monoterpenes. All fungi tested were inhibited, to some extent, by the resins tested. H. annosum and P. cinnamomi were strongly inhibited by all the monoterpenes tested. The ophiostomatoid fungi were significantly less affected by the compounds tested. L. huntii and L. serpens were less inhibited by monoterpenes than either L. terebrantis or L. procerum. These fungal growth studies show that the kind and amount of secondary metabolite produced by the host plant have a profound effect on tree pathogens. Alterations of tree physiology may have implications for defenses against tree pathogens as well as to the ecology and management of forest ecosystems. Difference in incidence of root disease observed in the field may be explained by the ability of the fungus to tolerate these host defense mechanisms.     

Decline‐associated Phaeoacremonium species occurring on forest trees in the north of Iran

Between 2013 and 2015, several surveys were conducted throughout forest areas in the north of Iran with the aim of isolating and identifying fungi present on trees showing decline symptoms. Fungal species, isolated from symptomatic wood tissues of various tree genera, including Zelkova, Acer, Parrotia, Quercus, Diospyros, Fagus, Fraxinus, Populus, Pinus, Pterocarya, Gleditsia, Carpinus, Ulmus, Crataegus, Alnus, Mespilus, Punica, Cydonia, Cupressus and Prunus, were morphologically identified and characterized. A molecular identification based on comparisons of DNA sequences of the β‐tubulin gene allowed us to identify seven species belonging to Phaeoacremonium; namely, Phaeoacremonium parasiticum, Pm. alvesii, Pm. minimum, Pm. iranianum, Pm. scolyti, Pm. fraxinopennsylvanicum and Pm. croatiense were isolated and identified. Phaeoacremonium minimum was the most common species and isolated from Gleditsia caspica, Parrotia persica, Cydonia oblonga and Alnus glutinosa. Pathogenicity on selected plants using a mycelium plug inoculation method revealed that most of these species are pathogenic to all the tested trees, with Pm. parasiticum and Pm. minimum being the most pathogenic species. According to host plant species and geographical distribution, the majority of Phaeoacremonium species found represent new records. This is also the first report of Pm. croatiense in Iran and outside Croatia.     

Identification and characterization of the phytoplasma associated with elm yellows in southern Italy and its relatedness to other phytoplasmas of the elm yellows group

In the neighbouring regions Basilicata, Campania, and Calabria of southern Italy, diseased trees of European field elm (Ulmus minor) were examined for phytoplasmal infection using polymerase chain reaction (PCR) technology. All affected trees examined tested positively. Using a primer pair specific for the EY phytoplasma group and restriction fragment length polymorphism (RFLP) analysis of PCR-amplified ribosomal DNA, the organism detected was identified as the elm yellows (EY) phytoplasma. RFLP analysis of PCR-amplified ribosomal DNA was also employed to attempt differentiation within the EY group which includes, in addition to the EY agent, phytoplasmas infecting Rubus, alder, eucalypts, Spanish broom, and grapevine. Following separate digestion with AluI, RsaI, Sau3AI, MseI, HhaI, and KpnI, all PCR-products from EY-group phytoplasmas examined had similar RFLP profiles. When the same ribosomal DNA fragments were digested with TaqI restriction endonuclease, three different restriction profiles were detected among the EY-group phytoplasmas. These profiles represented, respectively, (1) the EY phytoplasma (2) the phytoplasmas causing rubus stunt and being associated with alder yellows, spartium witches broom, and eucalyptus little leaf, and (3) the flavescence dorée phytoplasma. RFLP analysis using TaqI endonuclease enabled for the first time the differentiation of the phytoplasmas associated with alder yellows, eucalyptus little leaf, and spartium witches broom from the EY agent.     

Pathogenic fungi associated with pre‐ and post‐emergence seedling blight of pine and cypress in Fars Province,Iran

Seed and root rot of pine and cypress seedlings cause heavy annual losses to forest nurseries in Fars Province. Root and crown samples of various species of conifers, such as Tehran pine (Pinus eldarica), brutia pine (Pinus brutia), Arizona cypress (Cupressus arizonica), Shirazian cypress (Cupressus sempervirens var. fastigiata), common cypress (C. sempervirens var. horizontalis) and oriental arborvitae (Thuja orientalis), showing chlorosis, necrosis, stunted growth, defoliation and root and crown rot symptoms were collected from pine and cypress nurseries across Fars province at various time intervals. Infected tissues were washed and cultured on acidified potato dextrose agar (PDA) and corn meal agar (CMA) amended with Delvocide and ampicillin, with and without surface sterilization, respectively, and incubated at 25°C for 3–5 days. Decaying seeds of all plant species were also collected from nursery seed stocks and cultured on PDA. Hyphal tip isolates were used for further studies. Species of Phytophthora, Pythium, Rhizoctonia and Fusarium were isolated from symptomatic seedlings of pine and cypress at different times during the growing season. Pathogenicity of isolates of Phytophthora, Pythium and Rhizoctonia was confirmed on seedlings of all plant species, whereas Fusarium sp. isolated from the seeds of Tehran pine was only pathogenic on seedlings of Tehran pine and Arizona cypress. Virulent isolates identified as Phytophthora nicotiana var. parasitica, Pythium ultimum, Pythium paroecandrum, Rhizoctonia solani and binucleate Rhizoctonia‐like fungus caused root and crown rot of pine and cypress seedlings. Pathogenic isolates of Fusarium identified as Fusarium proliferatum also caused pre‐emergence seed decay of pine and cypress. Isolates of Phytophthora and Pythium were the most virulent of these fungal isolates.     

Host-environment mismatches associated with subalpine fir decline in Colorado

Subalpine fir decline(SFD) has killed more trees in Colorado's high elevation forests than any other insect or disease problem.The widespread nature of this disorder suggests that the cause involves climatic factors.We examined the influence of varying combinations of average annual temperature and precipitation on the incidence and distribution of SFD.Climatic transition matrices generated in this study indicate that most healthy trees are found in climatic zones with moderate to low temperatures and high precipitation;whereas,SFD occurs mostly in zones of moderate temperatures and moderate precipitation.The contrasting distributions define an environmental mismatch.Forests matched with favorable climatic conditions thrive;those that are mismatched can become vulnerable to decline disease.     

Neofusicoccum parvum associated with pomegranate branch canker in Iran

Pomegranate (Punica granatum) is native to Iran and neighbouring countries and is negatively affected by a wide range of diseases. Canker and dieback diseases caused by Cytospora punicae and members of the family Botryosphaeriaceae are the main trunk diseases on pomegranate. In summer 2017, progressive dieback of branches on some young pomegranate trees was observed in orchards of the Gorgan Region (Golestan province, Northeast Iran). Fungal colonies with similar colony colour were isolated from symptomatic tissues. The identity of the causal agent was determined as Neofusicoccum parvum, based on a polyphasic taxonomic approach including morphological features of conidiomata and phylogenetic inference based on the ITS‐rDNA region and translation elongation factor 1 alpha (tef1‐α) gene. Koch's postulates were fulfilled using an excised shoot method. This study provides the first report on the occurrence of N. parvum as a cause of branch canker on pomegranate in Iran.     

Characterization,pathogenicity and host range studies of Paecilomyces formosus associated with dieback of Christ's thorn trees (Paliurus spina-christi Mill.) in Iran

Christ's thorn (Paliurus spina-christi Mill.) tree is an important and valuable forestry species and has significant potential in afforestation and reforestation systems. In recent years, dieback symptoms were observed on Paliurus spina-christi trees in Gilan-e Gharb region of Kermanshah province, west Iran. During 2020 to 2021, Christ's thorn trees that exhibit branch dieback symptoms were sampled for fungal isolations. The pathogenicity tests, biochemical assay of growth, acid production on creatine sucrose agar (CREA) medium and morphological and molecular investigations (ITS and β-tubulin regions) identified Paecilomyces formosus as a dieback causal agent. This is the first report of P. formosus pathogenicity on Paliurus spina-christi trees. Furthermore, disease severity was assayed on 11 tree species under three different temperatures 15, 25 and 35°C. Disease severity caused by all isolates on detached branches was greater at 35°C than at 15 and 25°C. This study presents the host range of this pathogen and showed that these potential hosts are prone to this pathogen under high temperatures, which forest trees experienced in recent decades.     

Intracellular infection by fungi in mycorrhizae of damaged spruce trees

Intracellular infection was found in the vascular tissue and meristem of mycorrhizae of a severely damaged stand of spruce and fir trees in the Northern Black Forest. Two fungal species could be isolated from surface sterilized mycorrhizae: Mycelium radicis atrovirens and Cryptosporiopsis cf. abietina. Infection tests with spruce seedlings revealed that mainly Cryptosporiopsis cf. abietina must be held responsible for infection of the vascular tissue. Less infectious was Mycelium radicis atrovirens, which infected only cortex cells.     

Decay development in living sapwood of coniferous and deciduous trees inoculated with six wood decay fungi

Development of decay and/or discoloration was assessed in the functional sapwood of one coniferous and three deciduous trees after wounding and artificial inoculation with six wood decay fungi. Living stems of mature Douglas fir, beech, oak, and sycamore trees were wounded in spring 2002 and immediately inoculated with brown, white, and soft rot fungi. Extent of discoloration and decay, wood weight loss, and total phenols in the reaction zone (zone of active response at a dynamic interface between living sapwood and wood colonized by decay fungi) were assessed 16 and 28 months after inoculation.     

Ophiostomatoid fungi associated with three spruce-infesting bark beetles in Slovenia

Context

Ophiostomatoid fungi can severely affect the health and economic value of Norway spruce trees (Picea abies). Although the diversity of ophiostomatoid species and their associations with insects have been well-investigated in central and northern Europe, little is known about the conditions in south-eastern Europe.

Aim

This study aims to study the assemblages of ophiostomatoid fungi associated with three bark beetle species (Ips typographus, Ips amitinus, and Pityogenes chalcographus) that infect Norway spruce in Slovenia.

Methods

Bark beetles were sampled in four phytogeographic regions in Slovenia. The fungi found on the bark beetles were identified based on morphology, DNA sequence comparisons of ITS regions and phylogenetic analysis. The species compositions of the fungal associates of the three insect species were compared and the pairwise associations of the occurrence of the fungal species were analysed.

Results

Thirteen different species were found. The most commonly encountered fungal associates of the beetles were Ophiostoma bicolor, Ophiostoma brunneo-ciliatum, Grosmannia piceiperda, Ophiostoma ainoae, Ceratocystiopsis minuta, and Grosmannia penicillata. The composition of the fungal associates differed among the bark beetle species, but not among the phytogeographic regions.

Conclusions

This study confirms that ophiostomatoid species are common associates of the investigated bark beetle species. Many ophiostomatoid species have strong host associations. I. typographus and P. chalcographus can act as effective vectors for O. bicolor, O. ainoae, G. piceiperda and O. brunneo-ciliatum, whereas I. amitinus often carries G. piceiperda and C. minuta in Slovenian forests.     

Molecular identification of decay fungi in the wood of urban trees

Trees are valuable for urban areas, however, are also susceptible to wood rot fungi. For accurate and fast assessment of the severity and evolution of decay in standing trees, a molecular technique was used to identify the causal agents of wood rot. Fruit bodies of wood decay fungi were collected from infected trees in various stands in Germany. Thirty-six species were identified by traditional methods. The DNA of fruit bodies was extracted, ITS-rDNA amplified by PCR, and ITS regions sequenced. Wood samples from infected urban trees were collected, the entire DNA extracted from affected wood parts, and fungal ITS amplified and sequenced. Fungal species were identified by comparing sequence data with the fruit body data. The technique enables an accurate and rapid identification of causal rot fungi in urban trees.     

Outbreaks of the tentcaterpillar(Malacosoma neustria L.) on elm trees in Amsterdam and the efforts to control them with derris-powder

Ohne Zusammenfassung     

New reports of Bursaphelenchus species associated with conifer trees in Romania

The 2013 annual monitoring programme for the pinewood nematode, Bursaphelenchus xylophilus, analysed a total of 267 wood samples collected from declining or symptomatic coniferous trees distributed among national forests, gardens, public parks, distribution centres, wood‐processing industries, as well as 104 samples collected from wood packing material originated from several other countries. From a total of eight species found, five have been previously reported from Romania, while three other species (Bursaphelenchus abietinus, Bursaphelenchus fraudulentus and Bursaphelenchus fuchsi) represent new findings for Romania. In addition, B. mucronatus was found in packing wood originated from Russia. Herein, we provide a morphological, morphometric and molecular characterization for the new species found for Romania. Bursaphelenchus xylophilus was not detected.     

Soil factors associated with infection by Collybia fusipes and decline of oaks

Collybia fusipes is the cause of a root rot of oaks in Europe. Infection by the pathogen is site dependent and inconsistently correlated with crown deterioration. This study aimed at clarifying the relationship between soil factors and the impact of C. fusipes on tree health. The database of the Département de la Santé des Forêts, the forest health survey service, collected over the French forest during the last 12 years allowed us to perform a large scale study dealing with soil textures in which C. fusipes was reported to induce problems on Quercus robur and/or Q. petraea. Furthermore, a specific survey from 30 plots in north eastern France was carried out to determine which of the soil factors, such as texture, degree of waterlogging, presence and nature of a layer limiting rooting, carbon/nitrogen ratio, cation exchange capacity, or pH could be related to an increased risk of decline of pedunculate oaks infected by C. fusipes. The main results were that C. fusipes is preferentially distributed on coarse textured soils and that its negative impact on tree crown deterioration also increased with the soil sand content.