Inheritance of resistance to late blight (Phytophthora infestans) in potato

Under epiphytotic conditions for late blight in spring seasons, data were recorded on its intensity four times at 4 days intervals from the start of the disease in the field, in 114 (19 females × 6 males) progenies and their parents planted in randomized complete block design in the years 2005 and 2006. Regression and stepwise regression analysis showed that observations during the rapidly increasing phase of disease between initial and last phase of disease are more important than the observations at initial and last phase of the disease. Combining ability analysis on a sub-set of 68 progenies showed that the additive component of genetic variance was more important than the non-additive component of variance in inheritance of quantitative resistance to late blight. The per se performance of the parents does give an idea about their general combining ability (GCA). However, selection of parents based on their GCA will be very useful for breeding for quantitative resistance to late blight. Parents JX 90, JF 4841, CP 3356, CP 1358, CP 3290, JN 1197 and CP 3125 were found to have good GCA for quantitative resistance for late blight and the best six crosses for late bilght resistance based on mean performance involved parents with good combining ability only.     

Field resistance to late blight (Phytophthora infestans (Mont.) De Bary) in potato (Solanum tuberosum L.) somaclones associated with instability and pleiotropic effects

Summary Adventitious regenerants (somaclones) of Bintje and their vegetative progeny were screened for field resistance to Phytophthora infestans as follows: the area under the disease progress curve was computed and correlated with resistance rating in Bintje and reference varieties. The resistance rating of the somaclones was determined from this relationship.Clones with stable improved field resistance in successive years' trials were detected, however, most of such clones were also maturation mutants. Variation in resistance rating in clone replicates and between years was detected in most clones.The possible basis of the field resistance and reasons for its instability are discussed.Abbreviations AUDPC area under the disease progress curve     

Molecular markers for late blight resistance breeding of potato: an update

Late blight is the most devastating disease of the potato crop that can be effectively managed by growing resistant cultivars. Introgression of resistance (R) genes/quantitative trait loci (QTLs) from the Solanum germplasm into common potato is one of the plausible approaches to breed resistant cultivars. Although the conventional method of breeding will continue to play a primary role in potato improvement, molecular marker technology is becoming one of its integral components. To achieve rapid success, from the past to recent years, several R genes/QTLs that originated from wild/cultivated Solanum species were mapped on the potato genome and a few genes were cloned using molecular approaches. As a result, molecular markers closely linked to resistance genes or QTLs offer a quicker potato breeding option through marker‐assisted selection (MAS). However, limited progress has been achieved so far through MAS in potato breeding. In near future, new resistance genes/QTLs are expected to be discovered from wild Solanum gene pools and linked molecular markers would be available for MAS. This article presents an update on the development of molecular markers linked to late blight resistance genes or QTLs by utilization of Solanum species for MAS in potato.     

Genetic linkage of QTLs for late blight resistance and foliage maturity type in six related potato progenies

A set of test crosses of diploid potatoes was used to identify QTLs for foliage resistance against Phytophthora infestans and QTLs for foliage maturity type, and to assess their genetic relationship. The most important locus for both traits was found on chromosome 5 near marker GP21: the allele of marker GP21 that is associated with resistance to late blight is also associated with late foliage maturity. An additional QTL with a small effect on foliage maturity type was identified on chromosome 3, and additional QTLs for late blight resistance were found on chromosomes 3 and 10. Another QTL was detected on chromosome 7 when resistance was adjusted for the effect of foliage maturity type. The additional QTLs for resistance against P. infestans on chromosomes 3 and 10 seem to be independent of foliage maturity type and are not affected by epistatic effects of the locus on chromosome 5. The effects of the additional QTLs for resistance are small, but early maturing genotypes that necessarily have the allele for susceptibility for late blight on chromosome 5 may benefit from the resistance that is provided by these QTLs on chromosomes 3 and 10.     

Introgression of resistance to late blight (Phytophthora infestans) from Solanum pinnatisectum into S. tuberosum using embryo rescue and double pollination

In order to investigate the agricultural potential of the genus Vicia, and identify traits associated with productivity and responsiveness to environment, 34 undomesticated Mediterranean accessions representing Section Narbonensis (V. johannis, V. narbonensis) and V. sativa were grown in five contrasting environments in northern Syria (growing season rainfall: 76–290 mm).Highly significant genotype × environment interactions were observed for all traits. For most of the components of yield, accession mean performance (productivity)was highly correlated with responsiveness across environments (r = 0.59–0.96), as defined by joint linear regressions. Thus high yielding genotypes tended to be relatively more productive than low yielding genotypes under conditions that favoured high yields. Regression analysis revealed that mean site yields were positively correlated to rainfall (r = 0.85) and its attendant effect on growing season length as measured by cumulative season temperature and phenology (r = 0.59–0.81).In order to examine yield related traits independently of taxonomy, genotypes were grouped into three categories using K-means clustering based on productivity and responsiveness of seed, hay and biological yield. Highly productive/responsive genotypes were tall with high harvest index, large seeds and low fecundity (seeds and pods per plant), whereas unproductive/unresponsive plants tended to be short, highly fecund, with small seeds and low harvest index. Principal components analysis showed that responsiveness, in terms of seed, hay and biological yields, was closely related to phenological plasticity. Thus highly productive/responsive genotypes were able to start flowering earlier than unproductive/unresponsive genotypes in early environments, but significantly later in late, higher rainfall environments. Plant growth habit was also related to yield responsiveness. In environments with little biomass production the proportion of erect plants was high in all three categories. In more favourable, high biomass environments, the proportion of erect plants in unproductive/unresponsive genotypes fell dramatically, but was unchanged among productive/responsive genotypes. We suggest that for unproductive/unresponsive genotypes competition for light is increased under optimal growth conditions. We argue that the optimal combination of fixed and responsive traits in high yielding genotypes results in a `compound interest-type' response to more favourable environments. Highly productive and responsive genotypes can capture resources more effectively than their low yielding counterparts, leading to a positive relationship between performance and responsiveness for most components of yield. Differences in productivity and responsiveness for seed, hay and biological yield reflected Vicia taxonomy, increasing in the following order from low to high: V. johannis, V. sativa, the small seeded V. narbonensis (salmonea, jordanica, affinis) V. n. var. narbonensis, and finally V. n. var.aegyptiaca. V. n. var. aegyptiaca showed the most agricultural potential, since the taxon contained all the properties of productive/responsive genotypes listed above, yielding >1 t/ha under extremely arid conditions (104 mm),and >2.5 t/ha on 290 mm rainfall, confirming its potential for dry environments. This revised version was published online in August 2006 with corrections to the Cover Date.     

马铃薯资源晚疫病抗性的全基因组关联分析

广谱抗性基因的挖掘是马铃薯高抗晚疫病品种选育的基础。本研究以288份国际马铃薯中心筛选的晚疫病抗性群体为试验材料,经过连续2年田间调查,计算AUDPC和sAUDPC值,评估群体晚疫病抗性;利用SLAF-seq方法进行群体简化基因组测序,通过对晚疫病抗性表型数据的全基因组关联分析,挖掘晚疫病抗性相关的遗传位点和候选基因,为晚疫病抗性品种选育和抗病机理研究提供一定的理论和材料基础。结果表明,晚疫病抗性在288份材料间存在着广泛的遗传差异;基于5种分析模型,共鉴定到82个与晚疫病抗性显著关联的位点;在关联区间关联到54个已知或可能与晚疫病抗性相关的基因。其中,23个基因为抗性基因,包括晚疫病抗性基因R1同源基因、Sw-5同源基因(R8)和Rpi-vnt1以及编码多效性耐药蛋白基因;5个基因编码MAPK蛋白和WRKY转录因子;1个基因参与茉莉酸途径;3个基因与水杨酸途径相关;6个基因是病程相关的基因;3个基因参与苯基丙酸类合成途径;其他与晚疫病抗性相关的基因,如HMGR基因(2个)、细胞色素P450(21个)。     

Correlation between late blight resistance and foliage maturity type in potato

The genetics of race-non-specific foliage resistance against Phytophthora infestans, of foliage maturity type, and of their association in potato (Solanum tuberosum) were studied. Six progenies were derived from a half-diallel set of crosses between diploid potato clones that represented a broad pool within the genus Solanum and were free of any of the 11 known R genes for late blight resistance. The progenies were evaluated for resistance to late blight and for foliage maturity type, and five of them showed a significant correlation between the two traits. The correlation did not account for all variation that was present for both traits, as reflected in the analysis in which the relative AUDPC values were adjusted for foliage maturity type. The present study adds to previous results: resistance against P. infestans always coincides with late foliage maturity. However, the results also indicate that some selection for late blight resistance without affecting the foliage maturity type should be possible.     

马铃薯抗晚疫病转基因研究进展

晚疫病是引起马铃薯产量损失最严重的真菌病害之一。由于其造成的经济损失巨大，马铃薯晚疫病已经成为当前世界马铃薯生产中重点防治的病害。利用基因工程技术培育抗病品种是防治马铃薯晚疫病最经济有效的途径。本文综述了马铃薯抗晚疫病转基因育种发展概况并讨论了农杆菌介导的马铃薯遗传转化及其影响因素。     

Vertical resistance to late blight in wild potato species from Argentina

The possible presence of vertical resistance to late blight conferred by R genes in Argentine wild Solanum species, which presumably have not evolved under the pressure of the fungus, was investigated. Solanum microdontum, S. commersonii and S. chacoense clones were tested in the greenhouse and with detached leaves in the laboratory after inoculation with a complex race and a non-virulent race of Phytophthora infestans. Two progeny tests were carried out to assess the performance of contrasting parents in regards to their resistance. A varying frequency of incompatible clones was detected among the species, with S. microdontum having the higher proportion of clones yielding incompatible reactions both in the laboratory and in the greenhouse. S. chacoense and S. commersonii showed a small but still considerable frequency of incompatible clones. The progeny tests confirmed the presence of R genes in a S. commersonii cross and their absence in a S. chacoense cross. The unexpected presence of R genes, its evolutionary significance and the consequences on the use of these species in breeding is discussed. This revised version was published online in August 2006 with corrections to the Cover Date.     

Resistance to potato late blight (Phytophthora infestans (Mont.) de Bary) in Solanum nigrum,S. villosum and their sexual hybrids with S. tuberosum and S. demissum

Summary Solanum nigrum and S. villosum, and their sexual hybrids with S. tuberosum and S. demissum respectively, were inoculated with a complex race of Phytophthora infestans. No visible reaction was seen on S. villosum and one genotype of S. nigrum. Another genotype of S. nigrum and the hybrids showed a hypersensitive response on most inoculated leaves. In one experiment, some sporulation was observed on detached leaves of a hybrid derived from S. nigrum. Microscopical examination of infections in S. nigrum and in a hybrid from S. nigrum, showed that penetration of epidermal cells and subsequent intercellular growth of the pathogen into the spongy mesophyll occurred, but without the formation of haustoria, and that invaded and neighbouring cells became necrotic. Callose appositions were found in epidermis and mesophyll cells of all inoculated genotypes, and also in epidermal cells of the unrelated nonhost species Brassica campestris.     

Field resistance to late blight and potato root eelworm in group tuberosum dihaploids

Summary An examination of the feasibility of obtaining dihaploids with high levels of field resistance to important potato pathogens, showed that dihaploids may be produced which are more resistant to late blight or to potato root eelworm pathotype E than are their tetraploid parents. The significance of this is discussed in relation to the possible types of gene action involved in conferring field resistance.     

Mapping and validation of QTLs for rice sheath blight resistance

Sheath blight, caused by Rhizoctonia solani, is one of the most serious diseases of rice. Among 33 rice accessions, mainly from National Institute of Agrobiological Sciences (NIAS) Core Collection, we found three landraces from the Himalayas—Jarjan, Nepal 555 and Nepal 8—with resistance to sheath blight in 3 years’ field testing. Backcrossed inbred lines (BILs) derived from a cross between Jarjan and the leading Japanese cultivar Koshihikari were used in QTL analyses. Since later-heading lines show fewer lesions, we used only earlier-heading BILs to avoid association with heading date. We detected eight QTLs; the Jarjan allele of three of these increased resistance. Only one QTL, on chromosome 9 (between markers Nag08KK18184 and Nag08KK18871), was detected in all 3 years. Chromosome segment substitution lines (CSSLs) carrying it showed resistance in field tests. Thirty F₂ lines derived from a cross between Koshihikari and one CSSL supported the QTL.     

Search for sources of early blight (Alternaria solani) field resistance not associated with vegetative late maturity in tetraploid potato germplasm

Summary A total of 934 potato cultivars and clones from different breeding programmes across the world were tested for their reaction to early blight (Alternaria solani) in Brasilia-DF, Brazil. This field trial was set up in order to identify tetraploid potato genotypes with useful levels of resistance to early blight (EB) that were not correlated with late maturity or lateness. Artificial inoculation (spread ofA. solani infected leaves over plant canopy) was employed even though EB occurs naturally at epidemic levels in the test area. Four disease assessments were made every 10 days, beginning 45 days after planting. Based on the evaluation made 65 days after planting, only 27 clones were identified that had less lesioned leaf area than the resistant standard (cv. Aracy). Area under disease progress curve (AUDPC) was also used as a criterion of resistance. Using AUDPC as a parameter, 22 genotypes were identified presenting values lower than or identical to cv. Aracy. Differences in the commercial yield were recorded in genotypes with identical response to EB, suggesting that distinct levels of tolerance to EB also exist. In spite of the strong correlation between EB resistance and late maturity, some genotypes derived from the parental materials NDD 277-2, Kufri Jyoti, CIP 377888-7, Maine-28, and the clones CFS 69.1 and I-853 were identified as having good levels of EB field resistance not linked with the negative phenotypic trait of lateness. These materials presented medium to medium-early maturity with a vegetative cycle of around 90–95 days. Some selected genotypes presented more acceptable agronomic characteristics including resistance toPhytophthora infestans, potato leaf roll luteovirus (PLRV) and potato virus Y (PVY). The EB resistance sources identified in this work can be recommended as parental materials for widening the genetic base for EB disease resistance in breeding programmes for highland tropical and subtropical areas.     

Genetic diversity of late blight resistant and susceptible Indian potato cultivars revealed by RAPD markers

Twenty-four tetraploid Indian potato cultivars were characterized by using RAPD markers to assess diversity within and between late blight resistant and susceptible cultivars. Sixty-four random decamer primers generated802 fragments, ranging in size from 60–3200 bp, with 96.4% fragment polymorphism. Shannon's index of diversity was used to quantify the degree of variability present within and between the variety types. Most of the diversity was detected within variety types, with 88% of variation being within and 12% being between the resistant and susceptible cultivars. No clear groupings based on late blight resistance and susceptibility or kinship was reflected on the dendogram. The late blight resistant cultivars exhibited higher variability compared to susceptible cultivars and they were more dispersed on the PCO plot. This revised version was published online in August 2006 with corrections to the Cover Date.     

Gene action in the resistance of peppers (Capsicum annuum) to Phytophthora stem blight (Phytophthora capsici L.)

Summary The variation among single and three-way crosses derived from seven lines of pepper (Capsicum annuum) selected for resistance to Phytophthora capsici was analyzed into statistical-genetic components due to general and specific combining abilities and additive-by-additive epistasis. Indirect evidence of higher order epistasis was also estimated. Epistasis was a principal source of variation. It was correlated with the level of aggressiveness of the pathogen. A breeding method such as recurrent selection seems to be the most appropriate to improve resistance to the fungus.     

Molecular breeding for resistance to Phytophthora infestans (Mont.) de Bary in potato (Solanum tuberosum L.): a perspective of cisgenesis

Late blight caused by Phytophthora infestans is one of the most devastating diseases in potato cultivation and is mostly controlled by the application of chemicals. However, introduction of combinations of resistance ( R ) genes conferring broad-spectrum resistance from wild Solanum species into cultivated potatoes is considered the most practical and promising approach to achieve durable resistance. This can be realized via classical breeding or genetic modification (GM). Because classical breeding is very time-consuming and is often hampered by linkage drag, a GM approach seems logic in this heterozygous and vegetatively propagated crop. During the last decades, many R genes have been identified in several wild Solanum species. Some have been cloned and more will follow. When these genes are derived from species crossable with cultivated potato (so-called cisgenes), application in resistance breeding using a GM approach is similar to an introgression breeding approach, in that the exploited genes are indigenous to the crop. Pending deregulation or derogation of cisgenesis, the use of cisgenic R genes would be an ideal strategy to accomplish durable resistance in potato.     

Identification of SSR markers linked to the Phytophthora resistance gene Rps1-d in soybean

To identify markers for the Phytophthora resistance gene, Rps1‐d, 123 F_{2 : 3} families were produced from a cross between Glycine max (L.) Merr. ‘Tanbakuro’ (a Japanese traditional black soybean) and PI103091 (Rps1‐d) as an experimental population. The results of virulence tests produced 33 homozygous resistant, 61 segregating and 29 homozygous susceptible F_{2 : 3} families. The chi‐squared test gave a goodness‐of‐fit for the expected ratio of 1 : 2 : 1 for resistant, segregating and susceptible traits, suggesting that the inheritance of Rps1‐d is controlled by a monogenic dominant gene. Simple sequence repeat (SSR) analyses of this trait were carried out using the cultivars ‘Tanbakuro’ and PI103091. Sixteen SSR primers, which produced 19 polymorphic fragments between the two parents, were identified from 41 SSR primers in MLG N. Eight SSR markers were related to Rps1‐d, based on 32 of the 123 F_{2 : 3} families, consisting of 16 homozygous resistant and 16 homozygous susceptible lines. The remaining 91 families were analysed for these eight markers, and a linkage map was constructed using all 123 F_{2 : 3} families. The length of this linkage group is 44.0 cM. The closest markers, Sat_186 and Satt152, are mapped at 5.7 cM and 11.5 cM, respectively, on either side of the Rps1‐d gene. Three‐way contingency table analysis indicates that dual‐marker‐assisted selection using these two flanking markers would be efficient.