Sound discrimination of two sympatric,threatened fish species allows for their in situ mapping

1. Human impacts on marine ecosystems are increasing and the number of fish species listed in the Red List is constantly growing. In the Mediterranean Sea, seven of the 10 bony fishes defined as Threatened by the IUCN are known to be vocal, including the target species of this study: the shi drum (Umbrina cirrosa Linnaeus, 1758) and the brown meagre (Sciaena umbra Linnaeus, 1758). As a result, non-invasive passive acoustic monitoring (PAM) can be used to pinpoint their distribution at sea. However, for PAM to be effective, reliable acoustic discrimination is required because the sounds they emit during reproduction are remarkably similar (i.e. short broadband pulsed sounds).
2. The shi drum and the brown meagre are closely related, elusive, vocal sciaenids, partially overlapping in their ecological niche. During summer 2019, three PAM surveys were conducted along the tidal inlets of the Venice lagoon (Italy). Here, the calls of both species have been recognized according to their temporal features: shi drum sounds were made up of a lower number of longer pulses with a different envelope, repeated at a lower rate than those of the brown meagre. Further, shi drum and brown meagre sounds of different origins (aquaculture and semi-natural conditions) were analysed and compared with those collected during the survey of the study area in order to validate the field collected data.
3. Call discrimination allowed for a fine-scale species mapping, showing a partially overlapping distribution of the two species along the inlets. This is the first case in which two sciaenids have been documented to share their reproductive habitat in the Mediterranean Sea.
4. This study demonstrates that it is feasible to acoustically monitor the target species even in those parts of the Mediterranean Sea where they co-exist. This, in its turn, could provide managers with the required data for effective conservation measures to be implemented.

     

Passive monitoring of phenological acoustic patterns reveals the sound of the camouflage grouper,Epinephelus polyphekadion

1. Passive acoustic monitoring (PAM) is a non‐invasive technique that uses hydrophones to monitor populations and ecosystem dynamics. Although many applications of PAM have been developed in recent years, it has never been used to identify a calling marine species.
2. The south pass of Fakarava Atoll, French Polynesia, hosts spawning events of many reef fish species, including the camouflage grouper Epinephelus polyphekadion, with a spawning aggregation abundance exceeding 17 000 individuals during the full moons of June and July.
3. The current study aimed to use PAM to distinguish camouflage grouper sounds among the vocal activities of all fish recorded during the aggregation periods. Audio recordings analysis resulted in the identification of 29 sound types, some of which showed diel and lunar patterns.
4. Temporal analysis of these sounds in relation to spawning activities allowed the identification of camouflage grouper calls. These calls can be described as a single pulse or a series of ‘boom(s)’ with a pulse duration of ~44 ms and a low dominant frequency of 103 ± 31 Hz. Video recordings show that the camouflage grouper produces the ‘booms’ to initialize spawner ascent and to promote synchronous gamete release into the water column.
5. The study highlights for the first time that PAM can be used to identify the previously unknown sound of a fish species. Moreover, we can use it to understand the phenology of some biological activities for improving the resolution of fish biodiversity assessments.

     

Modelling functional fish habitat connectivity in rivers: A case study for prioritizing restoration actions targeting brown trout

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Lethal effect of filamentous algal blooms on Atlantic herring (Clupea harengus) eggs in the Baltic Sea

1. During this study, the effects of epiphytic filamentous algae on the survival of demersal spawned fish eggs were investigated in one of the most important spawning grounds of herring in the western Baltic Sea, which is subject to intense and ongoing eutrophication.
2. In coastal marine ecosystems all over the world, eutrophication is a primary water quality issue, often resulting in mass developments of bloom‐forming algae. Macro‐algal blooms have immense ecological effects, as they alter the structure and the function of an ecosystem. Numerous fish species are affected, as they depend on those coastal areas for spawning and as juvenile habitats.
3. A comparison of the survival of herring eggs on two natural spawning beds re‐vealed an immense impact of a filamentous algal bloom. The mortality rate reached nearly 100% in the area with massive occurrence of filamentous brown algae.
4. Hypothesizing that the presence of filamentous algae facilitates herring egg mortality, field and laboratory experiments were conducted and revealed particular effects of distinct algal species. The survival rate of artificially spawned eggs on algal substrates and control substrates was compared. Whereas filamentous forms of the green alga Ulva intestinalis induced no immediate effect, significantly higher egg mortality was documented in experiments with the filamentous brown alga Pylaiella littoralis.
5. Considering the ecological and economical importance of herring and other coastal spawners on the one hand and the persisting and increasing effects of eutrophication and climate change on the other hand, the results of our study clearly underpin the necessity to increase global efforts to reduce nutrient loads in coastal waters.

     

Assessing the consequences of habitat fragmentation for two migratory salmonid fishes

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Predation on native fish eggs by invasive round goby revealed by species‐specific gut content DNA analyses

1. Conservation of riverine fish often aims to improve access to spawning grounds and restore longitudinal connectivity by removing migration barriers, and involves substantial investments. However, these investments also enable non‐native predators to invade upstream into spawning areas and potentially adversely affect the recruitment of threatened freshwater fish through egg or fry predation.
2. Detecting egg predation is often challenging. Visual inspections of fish gut contents may underestimate predation of soft materials such as eggs and fry, which limits the discovery of predators preying upon these life‐stages. DNA‐based detection assays may offer a more sensitive tool to assess predation of soft materials.
3. A conservation issue was confirmed by developing and applying a species‐specific DNA‐based detection assay: invasive round goby (Neogobius melanostomus) prey on the eggs or fry of the threatened common nase (Chondrostoma nasus) in Switzerland.
4. DNA‐based detection assays were also developed for five other valuable native fish species, including endangered salmonid and cyprinid river spawners. The applicability of the assays was confirmed in a series of laboratory and field feeding experiments involving eggs and fish tissue. In addition, this work provides a guiding framework for conservation managers regarding the use and applicability of different DNA‐based detection approaches for gut content analysis.
5. The results of this study could inform local conservation measures – such as temporary reductions in the density of round goby at spawning sites prior to spawning – and demonstrate how targeted application of species‐specific molecular markers may advance freshwater fish management.

     

Riverine spawning,long distance larval drift,and floodplain recruitment of a pelagophilic fish: A case study of golden perch (Macquaria ambigua) in the arid Darling River,Australia

1. Pelagic spawning riverine fish (pelagophils) spawn in free‐flowing river habitats with downstream drift of eggs and larvae but the spatial scale is often unknown, and this constitutes a major ecological knowledge gap.
2. In the arid Darling River in south‐eastern Australia, the present objectives were: (i) to determine the potential downstream dispersal distance of young golden perch (Macquaria ambigua); and (ii) to evaluate whether provision of environmental water enhanced dispersal of young fish from Menindee Lakes to the lower Darling River (LDR) while also cueing further spawning in downstream lotic reaches.
3. Golden perch spawned in unregulated lotic tributaries on a flood pulse and larvae drifted or dispersed >1,600 km downstream and entered large ephemeral productive floodplain lake nursery habitats as fully scaled fingerlings.
4. Planned releases of environmental water cued golden perch spawning in the LDR and enabled juvenile fish to disperse downstream from the Menindee Lakes nursery into receiving populations in the LDR, Great Darling Anabranch, and southern Murray River, with some fish potentially completing an active migration of >2,100 km by age 1 year.
5. The Darling River case study highlights the need for a system‐scale approach to the conservation management of pelagophilic fish, along with multi‐year perennial flow strategies to improve ecosystem integrity in large rivers globally.

     

Fisheries replenishment of early life taxa: potential export of fish eggs and larvae from a temperate marine protected area

An ichthyoplankton survey was conducted at the periphery of Cabrera National Park (Balearic Islands, Western Mediterranean Sea) in July 2004, using bongo nets, fixed nets and collection of oceanographic data. This work focused on analysing the distribution of eggs and larval stages of some fishery‐targeted taxa (Coris julis, Epinephelus spp., Sciaena umbra and Scorpaena sp.) whose adult abundances and/or biomass are higher in the reserve and therefore would be likely to show gradients of larval abundance attributable to the existence of the Marine Protected Area (MPA). Oceanographic data indicated there was water column stratification, horizontal distribution of surface water masses and hydrodynamic features linked with Mediterranean seasonality. During the summer sampling, eggs and larvae of targeted fish taxa were mainly located in the northeast of the MPA, near the coast. An effect of depth and current was demonstrated for Coris julis and Epinephelus spp. and there appears to be an offshore gradient for the other targeted taxa, especially for the egg stages. These data highlight the fact that the Cabrera archipelago is a potential important spawning area for targeted fishery species.     

A simple method for assessing minimum flows in regulated rivers: the case of sea lamprey reproduction

• 1. The sea lamprey (Petromyzon marinus) is an anadromous species that occurs in some large Iberian rivers, such as the Tagus, and their tributaries. The sea lamprey populations of the River Tagus are threatened by habitat loss and overexploitation, which means that conservation measures, including maintenance of the spawning grounds, are urgent. Habitat loss is mainly due to hydroelectric and flood‐control dams that have affected the migration and spawning habitats of anadromous species. The main objective of this study was to use a simple, cost‐effective method to assess a minimum instream flow for the regulated River Tagus. The method used was based on the wetted perimeter–discharge relationship, but accounted for the habitat requirements of spawning sea lampreys.
• 2. In 1998, a habitat survey was conducted along a 30 km segment of the River Tagus downstream from Belver Dam (the first impassable obstacle for fish movements), a stretch that includes potential habitats for spawning sea lampreys. Four spawning areas were identified, and in each one a representative reach was selected along which to collect elevation and geo‐positional data. For a range of flows from 0 to 50 m³ s^?1, hydraulic modelling and studies of spawning habitat availability were conducted, both for each reach and for the total wetted area of the four reaches.
• 3. The availability of spawning habitat was limited by flow. Results showed that the present minimum flow downstream from Belver Dam (8 m³ s^?1) is insufficient to ensure suitable habitat conditions in a significant part of the segment studied; gains in wetted usable area were more substantial with discharges of up to 20 m³ s^?1, and thus a minimum flow of 10–20 m³ s^?1 was recommended. Potential spawning habitat could be improved by increasing instream flow to at least 50 m³ s^?1. The impacts of the Belver release regime on anadromous species are discussed and a more ‘ecologically oriented’ form of water management is suggested

. Copyright © 2004 John Wiley & Sons, Ltd.     

Biodiversity values of remnant freshwater floodplain lagoons in agricultural catchments: evidence for fish of the Wet Tropics bioregion,northern Australia

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Importance of various marine coastal habitats during the life cycle of Spratelloides delicatulus in Con Dao,the oldest MPA in Vietnam

• 1. Marine protected areas (MPAs) are set up to conserve biodiversity, but their design is not always based on strictly scientific considerations. Ideally, an MPA should protect all key habitats necessary for a marine species to complete its life cycle. The identification of these key habitats is complex, especially during the early life of marine fishes.
• 2. A widely distributed tropical and important low trophic‐level fish species, Spratelloides delicatulus (Clupeidae), was used to evaluate the significance of various coastal habitats for its larvae and juveniles in the Con Dao Archipelago MPA in Vietnam. Early stages (larvae and juveniles) were sampled monthly over one year (June 2016 to May 2017) using light traps in three main habitats (seagrass beds, coral reefs and harbour). The species was identified using morphometry and DNA barcoding. Age and growth variables were estimated using otolith daily growth increments.
• 3. A total of 3,581 fish were caught. The species was not found in captures between January and February, directly linked to the decrease in seawater temperature and was most abundant from April to June. For a subsample of 248 fish (7–38 mm standard length), ages ranged from 7 to 108 days.
• 4. Captures and back‐calculated birthdates using otolith daily increments showed that S. delicatulus spawns during the period of high seawater temperature, from March to October. The species colonizes all three habitats during the early stages (0–26 days old), with growth rate lowest on the seagrass beds. Nevertheless, the species occupies seagrass beds exclusively during the older stages.
• 5. The conservation of seagrass beds in the Con Dao archipelago is essential for protection of juvenile stages of this species but this habitat is presently not included in the MPA patches. Establishment of a continuum of protected areas linking habitats, rather than the existing patches is needed to conserve the complete life cycle of this species in the Con Dao MPA.

     

Impacts of fishing,river flow and connectivity loss on the conservation of a migratory fish population

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Freshwater ecosystem vulnerability: Is native climatic niche good enough to predict invasion events?

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Listening to the unseen: Passive acoustic monitoring reveals the presence of a cryptic fish species

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Fragmentation and drying ratchet down Great Plains stream fish diversity

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Shelf‐edge reefs as priority areas for conservation of reef fish diversity in the tropical Atlantic

• 1. Data from fishing surveys employing bottom long‐lines were analysed to characterize the diversity, assemblages and distribution patterns of demersal fish along the Brazilian outer shelf and upper slope, between latitudes 13°S and 22°S.
• 2. Non‐metric multi‐dimensional scaling (MDS) and cluster analysis indicate three distinct species assemblages separated primarily by depth (the 200 m isobath) and secondarily by latitude (19°S), suggesting a continual transition along the depth and latitudinal gradients in the study area. Species richness was negatively correlated with depth, but with no clear relationship with latitude.
• 3. Results suggest the existence of reef formations on the shelf‐edge zone (40–200 m) and slope down to 500 m depth off the eastern Brazilian coast. More than 75% of the catches recorded were reef fish species from the families Serranidae, Lutjanidae, Malacanthidae, Muraenidae, Sparidae, Balistidae, Carangidae, Haemulidae, Scorpaenidae and Priacanthidae.
• 4. The maximum depth of occurrence for 20 reef species was extended from limits previously recorded.
• 5. The findings reinforce the hypothesis of a faunal corridor for species associated with deep reef formations along the shelf‐edge zone (40–200 m), in the South American continental margin, connecting the south‐western Atlantic and the Caribbean provinces.
• 6. The shelf‐edge reefs support important multi‐species fisheries and harbour critical habitats for the life cycle of many reef fish species, including spawning aggregation sites that are extremely vulnerable to human pressures, such as intensive fishing, shipping and offshore oil and gas exploitation; all activities currently expanding off the Brazilian coast.
• 7. Results reveal the biological importance of deep shelf‐edge reefs as a critical ecological area. Despite their importance, shelf edge reefs are not currently included in any marine protected area network in the tropical south‐western Atlantic. There is now an urgent need to enhance knowledge, implement adequate management strategies and consider these deeper habitats as priority areas for conservation. Copyright © 2011 John Wiley & Sons, Ltd.

     

Environmental flow releases trigger spawning migrations by Australian grayling Prototroctes maraena,a threatened,diadromous fish

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Water levels in a highland lake control the quantity and quality of spawning habitat for a littoral‐spawning galaxiid fish

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Essential fish habitats and hotspots of nekto‐benthic diversity and density in the western Mediterranean

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Dynamics of fish assemblages on coral reefs subjected to different management regimes in the Abrolhos Bank,eastern Brazil

• 1. Marine protected areas (MPAs) range from multiple‐use areas (MUA) to absolute no‐take reserves (NTR). Despite their importance for fisheries management, there are few long‐term studies comparing benefits from different types of MPAs within the same region.
• 2. Fish assemblages were monitored for five years (2001–2005) in the largest coral reefs in the South Atlantic (Abrolhos Bank, Brazil). Monitoring included one community‐based MUA, two NTRs (one established in 1983 and another in 2001), and one unprotected area. Benthic assemblages at these areas, as well as fish assemblages on unprotected deeper reefs (25–35 m), were monitored from 2003 onwards.
• 3. Habitat characteristics strongly influenced fish assemblages' structure. This, together with the lack of data from before establishment of the MPAs, did not allow an unequivocal analysis of the effects of the MPAs.
• 4. Biomass of commercially important fish, particularly small carnivores, was higher in the older NTR. Biomass of black grouper Mycteroperca bonaci increased by 30‐fold inside NTRs during the study period, while remaining consistently low elsewhere.
• 5. A single herbivore species, the parrotfish Scarus trispinosus, dominated fish assemblages (28.3% of total biomass). Biomass of this species increased in 2002 on the younger NTR and on the MUA, soon after establishment of the former and banning of the parrotfish fishery in the latter. This increase was followed by a decline from 2003 onwards, after increased poaching and reopening of the parrotfish fishery.
• 6. Fish biomass increased in 2002 across the entire region. This increase was stronger in sites closer to deeper reefs, where fish biomass was up to 30‐times higher than shallow reefs: movement of fish from deeper to shallower areas may have played a role.
• 7. The effective use of MPAs in the Abrolhos Bank is still dependent on adequate enforcement and the protection of critical habitats such as deep reefs and mangroves.

Copyright © 2008 John Wiley & Sons, Ltd.