Incidence of hybridization between Atlantic salmon, Salmo salar L., and brown trout, Salmo trutta L., in Ireland

The substantial growth of the farmed salmon industry in Europe since the 1970s has highlighted concerns regarding the genetic impact of escaped farmed salmon on wild salmonid stocks. High incidences of salmon × trout hybrids have been recorded in rivers situated near intensive salmon farming in Norway and Scotland, which may be indicative of a breakdown in reproductive isolation between salmon, Salmo salar L., and brown trout, Salmo trutta L. In the present study, salmonid fry and 0+ parr were collected from rivers in western Ireland. Allozyme and minisatellite DNA analysis were carried out on fry to determine the frequency of F1 hybrids from 10 rivers located within 38 km of salmon farms and three rivers at least 80 km from salmon farms. A total of 49 hybrids were recorded from 4135 salmonid fry (frequency = 1.2%). Mitochondrial DNA analysis showed that all hybrids arose from Atlantic salmon female × brown trout male crosses. Hybrid parr were recorded from one of the low-risk rivers (1.0%), but were present in seven out of the 10 catchments located within 38 km of salmon farms, with frequencies ranging from 0.7% to 3.1%. The results of the present survey, which represents the first extensive record of the levels of salmon-trout hybridization in Ireland, are discussed in relation to the continued growth of salmon farming in this country.     

An experiment in the planting of Atlantic salmon, Salmo salar L., fry

Abstract. During April 1989, approximately 45000 swim-up Atlantic salmon, Salmo salar L., fry were planted in the upper tributaries of the Lui Water, a tributary of the River Dee, north-east Scotland, at densities of between 2-6 and 3-3/m². Adult salmon are normally excluded from this stream by a waterfall. In mid-August 1989. a 5-km length of stream was surveyed for juvenile salmon and it was estimated that about 230000+ salmon were present. It was estimated that 518% of the original planted fry survived from April to August 1989. A further survey in August 1990 showed that about 3400 1 + salmon remained. Of the 0 + salmon 14·5% survived from August 1989 to August 1990.     

Density of brown trout, Salmo trutta L., and Atlantic salmon, Salmo salar L., parr after point and scatter stocking of fry

Atlantic salmon, Salmo salar L., and brown trout, Salmo trutta L., fry were point and scatter stocked in the early part of June at densities of 63–263 fry 100 m⁻² per species in the River Viantienjoki, a small river in northern Finland, and their population densities were assessed in late summer. Both species were always stocked together in similar quantities. Point stocking was used in the first 2 years and scatter stocking in the following 2 years. In point stocking, there was no correlation between the distance from the stocking sites (maximum = 250 m) and parr density in census sites ( r = −0.013 and 0.019 for brown trout and Atlantic salmon, respectively). The stocking density of fry did not influence parr density in August by either method or by species. Stocking density explained only from 11% to 23% of the parr survival depending on the species or stocking method. The mean densities of Atlantic salmon and brown trout parr did not differ significantly from each other at any fishing site ( P > 0.05). Both point and scatter stocking appear to be suitable methods for use in small rivers. The parr densities depend more on the other factors (e.g. habitat quality) than the stocking method, and the choice between methods could be based on the time and labour available.     

Reduction of brown trout, Salmo trutta L., salmon, S. salar L., and rainbow trout, Oncorhynchus mykiss (Walbaum), smolt bycatches in eel pound nets

Two types of bycatch reduction devices (BRDs) were tested in the Randers Fjord, Denmark, aimed at deflecting the surface-oriented smolts of brown trout, Salmo trutta L., salmon, Salmo salar L., and rainbow trout, Oncorhynchus mykiss (Walbaum), before they became trapped, while retaining the catches of eel, Anguilla anguilla (L.). The methods tested were: a) placing a floating guard net between the wings; and b) submerging the pot net (i.e. last enclosure before fyke net) 55–100 cm below mean sea level. After each haul the pound net-setups were changed from the control to one of the types of BRD, and vice versa. Both methods significantly reduced the bycatch of brown trout smolts, while catches of legal-sized eels were not affected. Submerging the pot net reduced smolt catches of all species; mean reductions were 91.1% for brown trout, 74.5% for rainbow trout, and 86.1% for salmon.     

Piscine reovirus (PRV) in wild Atlantic salmon,Salmo salar L., and sea‐trout,Salmo trutta L., in Norway

This is the first comprehensive study on the occurrence and distribution of piscine reovirus (PRV) in Atlantic salmon, Salmo salar L., caught in Norwegian rivers. PRV is a newly discovered reovirus associated with heart and skeletal muscle inflammation (HSMI), a serious and commercially important disease affecting farmed Atlantic salmon in Norway. A cross‐sectional survey based on real‐time RT‐PCR screening of head kidney samples from wild, cultivated and escaped farmed Atlantic salmon caught from 2007 to 2009 in Norwegian rivers has been conducted. In addition, anadromous trout (sea‐trout), Salmo trutta L., caught from 2007 to 2010, and anadromous Arctic char, Salvelinus alpinus (L.), caught from 2007 to 2009, were tested. PRV was detected in Atlantic salmon from all counties included in the study and in 31 of 36 examined rivers. PRV was also detected in sea‐trout but not in anadromous Arctic char. In this study, the mean proportion of PRV positives was 13.4% in wild Atlantic salmon, 24.0% in salmon released for stock enhancement purposes and 55.2% in escaped farmed salmon. Histopathological examination of hearts from 21 PRV‐positive wild and one cultivated salmon (Ct values ranging from 17.0 to 39.8) revealed no HSMI‐related lesions. Thus, it seems that PRV is widespread in Atlantic salmon returning to Norwegian rivers, and that the virus can be present in high titres without causing lesions traditionally associated with HSMI.     

Linking habitat characteristics with juvenile density to quantify Salmo salar and Salmo trutta smolt production in the river Sävarån,Sweden

Abstract Habitat mapping along 85 km of river was related to juvenile (15 years of electric fishing) and smolt (3 years of screw‐trapping) abundance data to estimate salmon, Salmo salar L., and sea trout, Salmo trutta L., smolt production in the River Sävarån, northern Sweden. Spawning site selection by radio‐tagged salmon (n = 12) and sea trout (n = 4) was also assessed. Fifty‐one hectares of potential spawning and nursery habitat was found in the main stem river, representing 25% of the total river area. These areas were estimated to yield 1300–7580 salmon and 630–3540 sea trout smolts based on juvenile densities, equating with 3 years of screw‐trap data (2990–5080 salmon and 680–2520 trout smolts, respectively). A hypothetical maximum production of about 19 900 salmon smolts was predicted for the river at a density of 40, 0+ salmon 100 m^?2. Tracking adults during the spawning period identified optimal and potential reproductive areas.     

Dispersion of stocked brown trout, Salmo trutta L., and landlocked salmon, Salmo salar L., from stocking sites in Lake Oulujärvi, Finland

Movement and recaptures of two hatchery-reared brown trout, Salmo trutta L., stocks and landlocked salmon, Salmo salar L., released at different sites in regulated Lake Oulujärvi, were studied in relation to release site. Five groups of fish from each stock were released in approximately equal numbers. Most of the fish released in June and July were recaptured within 3 months, whereas the majority of the fish released in early winter (October and November) were caught the following spring, about 7–9 months after stocking. The release site had a significant effect on recapture rate. The results showed that fishing restrictions targeted mainly at gill net fishing are needed to preserve the stocked fish from overfishing. Significantly fewer recaptures were observed from the landlocked salmon stocking compared with brown trout. The recaptures from the landlocked salmon stocking indicated more active movement and less clumping compared with the two brown trout stocks.     

Strontium levels in scales and vertebrae of wild and hatchery-reared Atlantic salmon, Salmo solar L., smolts

Abstract. Analyses of the Sr-contenl in scales of Atlantic salmon, Salmo saiar L ., smolts from two hatcheries revealed significant ( P < 0·001) differences. These differences were reflected in the Sr-conients of their respective diets. Sr-values in scale samples taken from wild salmon smolts from 10 Norwegian rivers showed a considerable variation. Analysis of variance showed that sampling site was the major source of variation. In general the Sr-content in scales cannot be used to distinguish between hatchery-reared and wild salmon smolls, although the present results nevertheless suggest that such a distinction is possible in some localities.
The Sr-contenl of the vertebrae was somewhat lower than that of the scales in both hatchery-reared and wild smolls. The Sr-conient of the scales of sea trout, Salmo trutta L., smolts from one of the sampling sites was significantly ( P < 0·001) higher than that of scales of Atlantic salmon smolts from the same site. The Sr-content of the scales of all the salmon smolts sampled from a lake was higher than the values recorded for sea trout and salmon after their stay in the sea. Use of the Sr-contenl of the scales todistinguish between migratory and resident individuals should therefore be done with care.     

River bed construction: impact and habitat restoration for juvenile Atlantic salmon, Salmo salar L., and brown trout, Salmo trutta L.

The River Soya, Norway, was canalized for agricultural purposes. In order to compensate for damage to the Atlantic salmon, salmo salar L. and brown trout, Salmo trutta L. populations, different weirs were built. The aims of this study were firstly to analyse the effects of weirs covering the river bank and entire river bottom with blasted stones and secondly, to analyse the effects of sediments transported by freshets on the downstream salmon and trout populations after canalization. Restoration of the river bottom with blasted stones provided salmon with more substrate spaces. Densities of trout increased after the river bank was covered with stones. Sediments transported downstream from the canalized river stretch decreased the densities of juvenile salmon and trout.     

Comparison of population dynamics of Atlantic salmon (Salmo salar) and brown trout (Salmo trutta) in a small tributary of the River Scorff (Brittany, France)

The population dynamics of Atlantic salmon (Salmo salar L.) and brown trout (Salmo trutta L.) were compared in a small tributary of the River Scorff (Brittany, France) from spawning time to the beginning of the third growing season. The spawning and fry emergence of the two species took place at approximately the same time. In the first autumn, the densityof 0+ juveniles and settling rate from the egg stage were much higher in trout than in salmon. The emigration rate from 0+ population was much higher in trout than in salmon. The size of resident and migrating fish was always smaller in salmon than in trout, whatever the age. The low level of salmon production in the brook, compared with trout, was the result of low survival from egg to 0+ stage in autumn, combined with the small proportion of juveniles migrating after the first growing season. This was not compensated by a high number of migrants the next year. The role of physical habitat, inter-and intraspecific competition, predation and migration dependence on size and early sexual maturity is discussed. Indications are that small tributaries of the type studied are of great value for recruitment in trout but not very productive for juvenile salmon.     

Lake-use by juvenile Atlantic salmon (Salmo salar L.) and other salmonids in northern Norway

Abstract– The utilization of lakes, and inlet and outlet streams by juvenile Atlantic salmon ( Salmo salar L.), brown trout ( Salmo trutta L.) and Arctic charr ( Salvelinus alpinus (L.), were investigated in 16 watercourses northern Norway, all known to inhabit salmon stocks. In lakes, fish were caught by small mesh size gill nets, while in rivers fish were caught electrofishing. In the shallow littoral (0-3 m depth) there were juvenile salmon in 15 of 19 investigated lakes, juvenile trout in 17 and juvenile charr in seven. Trout dominated significantly in numbers in the shallow littoral of seven lakes, while salmon and charr dominated in three lakes each. When trout and salmon were frequent in the shallow littoral, charr was usually not present in this habitat, but were found in the profundal zone in most of the lakes. Atlantic salmon parr utilized both shallow and deep lakes, and used both stones and macrophytic vegetation as shelter. The utilization of lakes by salmon parr seemed to be closely related to utilization of small inlet streams for spawning. In most inlet and outlet streams salmon dominated over trout in numbers, while charr were absent. This is the first documentation of lake-use by naturally occurring salmon parr in Scandinavia.     

Direct and indirect effects of riparian canopy on juvenile Atlantic salmon,Salmo salar,and brown trout,Salmo trutta,in south‐west Ireland

Abstract Dense riparian tree canopy is generally found to have a negative effect on salmonid populations. Canopy can affect fish both directly via trophic impacts and its effects as cover, and indirectly via its effects on the distribution of instream vegetation. This study examined the impact of riparian canopy on the ecology of juvenile Atlantic salmon, Salmo salar L., and brown trout, Salmo trutta L., in south‐west Ireland. Riparian canopy reduced the density, length and gut contents of juvenile salmon, but not brown trout. The negative relationship between canopy cover and fish size and feeding was strongly influenced by the abundance of instream macrophytes, which in turn varied as a function of catchment water chemistry. As a management strategy, the reduction of dense riparian canopy is unlikely to have the same effect on juvenile salmonids on all streams within an ecoregion because of differences in catchment‐wide factors.     

Seasonal variation in habitat use by salmon, Salmo salar, trout, Salmo trutta and grayling, Thymallus thymallus, in a chalk stream

Abstract A portable multi‐point decoder system deployed in a tributary of the River Itchen, a southern English chalk stream, recorded the habitats used by PIT‐tagged juvenile salmon, Salmo salar L., trout, Salmo trutta L. and grayling, Thymallus thymallus L., with a high degree of spatial and temporal resolution. The fishes’ use of habitat was monitored at 350 locations throughout the stream during September/October 2001 (feeding period) and January/February 2002 (over‐wintering period). Salmon parr tended to occupy water 25–55 cm deep with a velocity between 0.4 and 1.0 m s^?1. During both autumn and winter, first year salmon (0+ group) were associated with gravel substrate during the daytime and aquatic weed at night. In autumn, 1+ salmon were strongly associated with hard mud substrates during the day and with marginal tree roots at night. In winter, they were located on gravel substrate by day and gravel and mud at night. Trout were associated with a greater range of habitats than salmon, generally occupying deeper and faster water with increasing age. During the autumn, 0+ trout were located along shallow (5–10 cm) and slow (?0.1–0.4 m s^?1) margins of the stream, amongst tree roots by day and on silty substrates at night. During winter the 0+ trout occupied silty substrates at all times. As age increased, trout increasingly used coarse substrates; hard mud, gravel and chalk, and weed at night. All age groups of grayling (0+, 1+ and 2+) tended to occupy hard gravel substrate at all times and used deeper and faster water with increasing age. The 1+ and 2+ groups were generally found in water 40–70 cm deep with a velocity between 0.3 and 0.5 ms^?1, whilst the 0+ groups showed a preference for shallower water with reduced velocity at night, particularly in the winter. There were greater differences in the habitats used between species and age groups than between the autumn and winter periods, and the distribution of fish was more strongly influenced by substrate type than water depth or velocity. The results are discussed in relation to the habitat requirements of mixed salmonid populations and habitat management.     

The interpretation of anglers'records (trout and sea trout, Salmo trutta L., and salmon, Salmo salar L.)

Abstract. This paper collates the results of five surveys which were made to determine the average catch of anglers not making a return at game fisheries. This pilot study shows that the average catch per licence/permit ( ) may be estimated from the average and the proportion of unprompted returns, (m_u) and (p_u) respectively, by the empirical equation , for trout and sea trout, Salmo trutta L. Salmon, Salmo salar L., catcrl'rates may be best estimated from . Typical values for United Kingdom waters are tabulated for recent seasons. Rod catches of stillwater and migratory fish closely follow the Negative Binomial distribution. Their means and variances are shown to be related empirically by Taylor's power law: for daily records of stillwater trout and migratory fish , and for annual records of salmon , and of sea trout . A method of estimating the expected frequency distribution of catches at any water is shown. The distribution is truncated where the nil catches are not recorded and is censored where the bag is limited; here a microcomputer was programmed to compute the estimates of the mean and variance of the catches and to print the full distribution.     

Atlantic salmon, Salmo salar L., and sea trout, Salmo trutta L., passage in a regulated northern river – fishway efficiency, fish entrance and environmental factors

The number and the size of Atlantic salmon, Salmo salar L., using the Isohaara fishway was elevated by increasing the fishway discharge and by changing the type of the pass entrance. The fishway is intended to help fish bypass a hydroelectric station located close to the mouth of the large, regulated River Kemijoki, in northern Finland. Multi-sea-winter (MSW) salmon returned to the river mouth during peak flows in early June but did not use the fishway until 1 month later. Their number in the fishway was positively correlated with the tailwater level. One-sea winter (1-SW) salmon, which arrived approximately one month later, started to enter the fishway without corresponding delays. In autumn, a high tailwater level and a small drop at the fish entrance seemed to be needed for the successful passage of these small-sized salmon and sea trout, Salmo trutta L.     

Influence of stock levels, fishing effort and environmental factors on anglers' catches of Atlantic salmon, Salmo salar L., and sea trout, Salmo trutta L.

Abstract. Monthly catches of Atlantic salmon, Salmosalar L., and sea trout, Salmo trutta L., by anglers in a west of Ireland fishery were analysed. Data were available for 50 months from the years 1971 to 1981. The most important single determinant of catch was found to be fishing effort measured in boat-days. An additional 10 boat days were found to correspond to a catch of almost 6 salmon and 23 sea trout. The relationship between catch and stock was weaker, though a relatively high catchability of sea trout at low stock levels was recorded. Slock levels, fishing effort and environmental factors accounted for much, but not all, of the variation in catch from month to month and from year to year. Most of the effect of rainfall, sunshine and water level was attributable to variations in fishing effort associated with these factors.     

Morphometric and meristic characters in salmon, Salmo salar L., trout, Salmo trutta L., and their hybrids

Abstract. Atlantic salmon, Salmo salar L., brown trout, S. trutta L. and their hybrids are normally identified in the field by empirical differences in maxilla length, thickness of the caudal peduncle, degree of forking of the tail and overall body conformation. This study quantifies these characters and analyses their variations in electrophoretically identified hatchery-reared individuals. Means and variances of the various measures are presented for salmon, trout and hybrids separately. The morphometric characters do not satisfactorily distinguish hybrids from the pure species, and even within samples of the pure species, some individuals will be misclassified as hybrids, or as members of the opposite species, if single characters are used on their own. Hybrids often resemble one or other parent species in one or more characters and are less often intermediate in phenotype. Triploidized hybrids are more like salmon than diploid hybrids are, and triploidized salmon are not different from diploid salmon. The results confirm that frequencies of hybrids of these species cannot be reliably assessed by morphological characters alone, and even for individuals of the pure parental species, independent confirmation of species status is advisable. Early reports of hybrid frequencies in wild stocks should be treated with caution, and apparently higher levels of hybridization in more recent studies compared with older, traditional surveys may simply reflect the greater precision of electrophoretic identification.     

Proliferative kidney disease in brown trout, Salmo trutta L., and Atlantic salmon, Salmo salar L., parr: histopathological and epidemiological observations

Abstract Proliferative kidney disease (PKD) has been described in cultivated rainbow trout but major outbreaks have not been recognized in other fish species. This paper describes light and electron microscope studies and presents epidemiological data of a disease condition in first summer Salmo salar parr and S. trutta , which is associated with an organism apparently identical to the aetiological agent of PKD. The pathology was found to be similar to that described for PKD in rainbow trout. The epidemiology in the brown trout suggests that exposure after May does not result in infection. The data from the outbreaks in two salmon hatcheries appear complex and suggest different susceptibilities to PKD among salmon originating from different sources.     

Brown trout, Salmo trutta L.: a new species for intensive marine aquaculture

Abstract. Strains of two salmonid species, brown trout, Salmo trutta L., and Atlantic salmon, Salmo salar L., were compared for the purpose of marine aquaculture. Survival rate, growth and sexual maturation rate were investigated. Brown trout performances were good and allowed for intensive production.     

Escaped farmed Atlantic salmon, Salmo salar L., feeding in Scottish coastal waters

Escaped reared salmon, Salmo salar L., were distinguished from wild salmon in the catch of a coastal salmon fishery on the west coast of Scotland. The stomach contents of 54 escaped fish were examined to determine their recent feeding history and 19 (35%) were found to contain food. The predominant prey were juvenile whiting, Merlangius merlangus (L.), unidentified Gadidae and sandeels (Ammodytidae), although other fish and invertebrates, mainly post-larval hermit crabs (Paguridae), were recorded. All these prey are pelagic or semi-pelagic. These observations demonstrate that escaped salmon feed on natural prey in coastal waters and extend our knowledge of the diet of salmon in their marine phase.