Dissection of additive,epistatic and QTL × environment effects involved in oil content variations in rapeseed

In this study, we observed variation of rapeseed oil content in SG population across 11 environments. A joint mapping was conducted to detect the quantitative trait loci (QTL) involved in oil content variation. We examined additive main (a), epistatic effects (aa) and their interactions with environments (QE). Apart from a of 12 QTL (collectively to 6.74% of oil content), aa of 18 locus pairs contributed to 5.36% difference, explaining 45.3% of phenotypic variation in the population. Moreover, 28 QE interactions contributed to a change of 1.55% in oil content in each environment, accounting for 13.3% phenotypic variation. Two environmentally sensitive QTL (OilC2 and OilC8‐1) exhibited a small a (0.17) but strong ae (0.41 and 0.32 averagely). These two QTL were also frequently involved in epistatic interactions. However, two major QTL (OilA7 and OilC8‐2) showed few QE and uninvolved in epistasis. In conclusion, a and aa were the dominant contributors to oil content in rapeseed, while QE accounted for 10‐15% of variation. The results suggest OilA7 and OilC8‐2 are potential candidates for breeding utilization and gene cloning.     

Identification and multiple comparisons of QTL and epistatic interaction conferring high yield under boron and phosphorus deprivation in Brassica napus

Boron (B) and phosphorus (P) are two essential nutrients for plants. To unravel the genetic basis of B and P efficiency in Brassica napus, quantitative trait locus (QTL) and epistatic interaction analysis for yield and yield-related traits under contrast B and P conditions were performed using two mapping populations across various environments. Main effect QTLs were detected by QTLNetwork and QTL Icimapping (ICIM), and were compared with our previously reported main effect QTLs identified by QTLCartographer. Epistatic QTLs were identified by QTLNetwork, ICIM and Genotype matrix mapping (GMM), and multiple comparisons of main effect QTLs and epistatic QTLs were conducted. For the two mapping populations, 51 main effect QTLs were identified by QTLNetwork, 106 by ICIM. Among them, 35 main effect QTLs were simultaneously identified by three programs. Moreover, 578, 18 and 62 epistatic QTLs were identified by GMM, QTLNetwork and ICIM, respectively. Interestingly, a total of 235 epistatic QTLs identified by GMM were associated with 50 main effect QTLs identified by three programs. However, only nine epistatic QTLs identified by QTLNetwork and ICIM were involved in main effect QTLs. Twenty-two main effect QTLs in the BERIL population overlapped with 20 main effect QTLs for the same traits in the BQDH population, but no main effect QTLs were detected both under P and B stress environments, indicating the genetic differences in B and P homeostasis in B. napus. By in silico mapping, 29 candidate genes were located in the consensus QTL intervals. This study suggested the availability of dissecting genetic basis for complex traits under B/P deficiency by analyzing main effect QTLs and epistatic QTLs using multiple programs across different environments. The robust main effect QTLs and epistatic QTLs associated could be useful in breeding B and P efficient cultivars of B. napus.     

Genetic analysis of kernel oil content in tropical maize with design III and QTL mapping

Oil content and grain yield in maize are negatively correlated, and so far the development of high-oil high-yielding hybrids has not been accomplished. Then a fully understand of the inheritance of the kernel oil content is necessary to implement a breeding program to improve both traits simultaneously. Conventional and molecular marker analyses of the design III were carried out from a reference population developed from two tropical inbred lines divergent for kernel oil content. The results showed that additive variance was quite larger than the dominance variance, and the heritability coefficient was very high. Sixteen QTL were mapped, they were not evenly distributed along the chromosomes, and accounted for 30.91% of the genetic variance. The average level of dominance computed from both conventional and QTL analysis was partial dominance. The overall results indicated that the additive effects were more important than the dominance effects, the latter were not unidirectional and then heterosis could not be exploited in crosses. Most of the favorable alleles of the QTL were in the high-oil parental inbred, which could be transferred to other inbreds via marker-assisted backcross selection. Our results coupled with reported information indicated that the development of high-oil hybrids with acceptable yields could be accomplished by using marker-assisted selection involving oil content, grain yield and its components. Finally, to exploit the xenia effect to increase even more the oil content, these hybrids should be used in the Top Cross^™ procedure.     

Pure line selection for improved yield, oil content and different fatty acid composition of sesame, Sesamum indicum

The aims of this study were estimation of the variability of seed yield, oil content, oleic acid and linoleic acid content in single plant progenies and lines derived from Turkish sesame populations, and the improvement of different type lines with regard to high seed yield, high oil content and specific fatty acid composition. Different types of lines were developed—i.e. lines which yielded over 1000 kg seeds/ha from the yield type progenies and lines which yielded over 63% of oil content from oil type progenies—but it was not possible to improve lines where fatty acid composition differed dramatically from that of oleic and linoleic type progenies.     

Genetic analysis and QTL mapping of oil content and seed index using two recombinant inbred lines and two backcross populations in Upland cotton

Cottonseed is one of the main by‐products of cotton. To explore the genetic composition of oil content (OC) and seed index (SI) is helpful for utilizing the cottonseed. Under multiple environmental conditions, the genetic structures of OC and SI were explored using two recombinant inbred lines (RILs) and corresponding backcross (BC) populations in Upland cotton. Twenty‐four and 31 quantitative trait loci (QTLs) for OC and SI, respectively, were detected using composite interval mapping, in which 9 QTLs for OC and 18 QTLs controlling SI were simultaneously identified in more than two environments or two populations. Forty‐seven and 37 QTLs with main effects (M‐QTLs) for OC and SI and 114 and 74 QTLs involved in digenic interactions (E‐QTLs), respectively, identified by inclusive composite interval mapping. On average, the E‐QTLs explained a larger portion of the phenotypic variation than the M‐QTLs did. It was concluded that additive effects of single‐locus and epistasis derived from complementary loci with few detectable single‐locus effects played an important role in oil content and seed index in Upland cotton.     

Correlated responses of fatty acid composition, grain quality, and agronomic traits to nine cycles of recurrent selection for increased oil content in oat

Increases in the groat-oil content of oat (Avena sativa L.) increase the energy value of the grain and improve the feasibility of extracting oat oil for use as a vegetable oil. Nine cycles of recurrent selection for greater groat-oil content conducted in a genetically broad-based oat population resulted in dramatic increases in groat-oil content. Our objectives were todetermine if selection for greater groat-oil content affected fatty acid composition, grain quality traits (test weight and seed weight), or agronomic traits (straw yield, biomass, harvest index, heading date, and height). We evaluated 100 random lines from the base (C0) population and each of the nine selection cycle populations in three environments in order to estimate means, genetic variances, heritabilities, and genotypic and phenotypic correlations of grain quality and agronomic traits. We also evaluated 20 random lines from each population to estimate changes in fatty acid contents. Oleate and stearate contents increased over cycles of selection, as did the ratio of unsaturated to saturated fatty acids. Palmitate, linoleate, and linolenate contents and all grain quality and agronomic traits except harvest index decreased over cycles of selection. There was no evidence for reduced genetic variance or heritability in C9 for any trait, but the genotypic and phenotypic correlations between agronomic traits and oil content fluctuated over cycles. Selection for increased groat-oil content improved oil quality but reduced grain quality and agronomic performance of the population. This revised version was published online in August 2006 with corrections to the Cover Date.     

Estimation of seed weight, oil content and fatty acid composition in intact single seeds of rapeseed ( Brassica napus} L.) by near-infrared reflectance spectroscopy

The potential of near-infrared reflectance spectroscopy (NIRS) for the simultaneous analysis of seed weight, total oil content and its fatty acid composition in intact single seeds of rapeseed was studied. A calibration set of 530 single seeds was analysed by both NIRS and gas-liquid chromatography (GLC) and calibration equations for the major fatty acids were developed. External validation with a set of 75 seeds demonstrated a close relationship between NIRS and GLC data for oleic (r = 0.92) and erucic acid (r = 0.94), but not for linoleic (r = 0.75) and linolenic acid (r = 0.73). Calibration equations for seed weight and oil content were developed from a calibration set of 125 seeds. A gravimetric determination was used as reference method for oil content. External validation revealed a coefficient of correlation between NIRS and reference methods of 0.92 for both traits. The performance of the calibration equations for oleic and erucic acid was further studied by analysing two segregating F2 seed populations not represented in the calibration set. The results demonstrated that a reliable selection for both fatty acids in segregating populations can be made by using NIRS. We concluded that a reliable estimation of seed weight, oil content, oleic acid and erucic acid content in intact, single seeds of rapeseed is possible by using NIRS technique. This revised version was published online in July 2006 with corrections to the Cover Date.     

Oil content, tocopherol composition and fatty acid patterns of the seeds of 51 Cannabis sativa L. genotypes

The oil content, the tocopherol composition, the plastochromanol-8 (P-8) content and the fatty acid composition (19 fatty acids) of the seed of 51 hemp (Cannabis sativa L.) genotypes were studied in the 2000 and 2001 seasons. The oil content of the hemp seed ranged from 26.25% (w/w) to 37.50%. Analysis of variance revealed significant effects of genotype, year and of the interaction (genotype × year) on the oil content. The oil contents of the 51 genotypes in 2000 and 2001 were correlated (r = 0.37**) and averaged 33.19 ± 1.45% in 2000 and 31.21 ± 0.96% in 2001. The -tocopherol, -tocopherol, -tocopherol, P-8- and -tocopherol contents of the 51 genotypes averaged 21.68 ± 3.19, 1.82 ± 0.49, 1.20 ± 0.40, 0.18 ± 0.07 and 0.16 ± 0.04 mg 100g^–1 of seeds, respectively (2000 and 2001 data pooled). Hierarchical clustering of the fatty acid data did not group the hemp genotypes according to their geographic origin. The -linolenic acid yield of hemp (3–30 kg ha^–1) was similar to the -linolenic acid yield of plant species that are currently used as sources of -linolenic acid (borage (19–30 kg ha^–1), evening primrose (7–30 kg ha^–1)). The linoleic acid yield of hemp (129–326 kg ha^–1) was similar to flax (102–250 kg ha^–1), but less than in sunflower (868–1320 kg ha^–1). Significant positive correlations were detected between some fatty acids and some tocopherols. Even though the average content of P-8 in hemp seeds was only 1/120^th of the average -tocopherol content, P-8 content was more closely correlated with the unsaturated fatty acid content than -tocopherol or any other tocopherol fraction. The average broad-sense heritabilities of the oil content, the antioxidants (tocopherols and P-8) and the fatty acids were 0.53, 0.14 and 0.23, respectively. The genotypes Fibrimon 56, P57, Juso 31, GB29, Beniko, P60, FxT, Félina 34, Ramo and GB18 were capable of producing the largest amounts of high quality hemp oil.     

Genetic analysis of sodium,potassium and chloride ion content inLycopersicon

Summary Plants of the salt-sensitiveL. esculentum, the halophytic wild speciesL. pennellii, their F₁ hybrids and the interspecific F₂ generation were grown in Hoagland's liquid culture containing 100 mM NaCl and 6 mM K⁺. Analysis of the Na⁺, Cl^- and K⁺ ions contents of the leaves showed, as observed also in previous studies, that the cultivated parent accumlated more K⁺ and less Na⁺ than the wild parent. A total of 117 F₂ plants were assayed for 15 electrophoretically detectable isozyme markers which map to nine of the twelve tomato chromosomes. Four loci, all with a similar quantitative effect on Na⁺ and Cl^- uptake, were identified by virtue of their linkage to isozyme markers. Two other loci were found to affect K⁺ uptake. This study demonstrates the potential value of using genetic markers in order to gain a better understanding of the genetic basis of quantitative traits associated with the response of plants to salinity stress.     

Co-location of seed oil content,seed hull content and seed coat color QTL in three different environments in <Emphasis Type="Italic">Brassica napus</Emphasis> L.

Increasing seed oil content is an important breeding goal for Brassica napus L. (B. napus). The identification of quantitative trait loci (QTL) for seed oil content and related traits is important for efficient selection of B. napus cultivars with high seed oil content. To get better knowledge on these traits, a molecular marker linkage map for B. napus was constructed with a recombinant inbred lines (RIL) population. The length of the map was 1,589 cM with 451 markers distributed over 25 linkage groups. QTL for seed oil content, seed hull content and seed coat color in three environments were detected by composite interval mapping (CIM) tests. Eleven QTL accounted for 5.19–13.57% of the variation for seed oil content. Twelve QTL associated with seed hull content were identified with contribution ranging from 5.80 to 22.71% and four QTL for seed coat color accounted for 5.23–15.99% of the variation. It is very interesting to found that co-localization between QTL for the three traits were found on N8. These results indicated the possibility to combine favorable alleles at different QTL to increase seed oil content, as well as to combine information about the relationship between seed oil content and other traits.     

Identification of QTL for oil content,seed yield,and flowering time in oilseed rape (<Emphasis Type="Italic">Brassica napus</Emphasis>)

A genetic map was constructed with 353 sequence-related amplified polymorphism and 34 simple sequence repeat markers in oilseed rape (Brassica napus L.). The map consists of 19 linkage groups and covers 1,868 cM of the rapeseed genome. A recombinant doubled haploid (DH) population consisting of 150 lines segregating for oil content and other agronomic traits was produced using standard microspore culture techniques. The DH lines were phenotyped for days to flowering, oil content in the seed, and seed yield at three locations for 3 years, generating nine environments. Data from each of the environments were analyzed separately to detect quantitative trait loci (QTL) for these three phenotypic traits. For oil content, 27 QTL were identified on 14 linkage groups; individual QTL for oil content explained 4.20–30.20% of the total phenotypic variance. For seed yield, 18 QTL on 11 linkage groups were identified, and the phenotypic variance for seed yield, as explained by a single locus, ranged from 4.61 to 24.44%. Twenty-two QTL were also detected for days to flowering, and individual loci explained 4.41–48.28% of the total phenotypic variance.     

Improvement in hydroxy fatty acid seed oil content and other traits from interspecific hybrids of three Lesquerella species: Lesquerella fendleri , L. pallida, and L. lindheimeri

Interspecific hybridization offers potential to improve the hydroxy fatty acid (HFA) content of lesquerella. Lesquerella fendleri is currently being developed for cultivation as a potential new industrial oilseed crop because of its seed productivity. However, it has lower HFA content compared to L. pallida and L. lindheimeri. The objectives of this research were to improve the HFA oil content of L. fenderi through interspecific hybridization and to characterize hybrids and successive generations for seed oil fatty acid profile, fertility, seed set and other morphological traits. In this work, three species were successfully hybridized, self-pollinated, and backcrossed. Ovule culture was used in some cases to produce progeny where interspecific hybrids did not produce viable embryos. The traits measured were petal length, ovules per silique, seeds per silique, and weight of 1000 seed. Patterns of leaf trichomes were used to distinguish between parents and hybrids. Seed per silique indicated that autofertility occurred in L. pallida but not in the other two species. HFA oil content of L. fendleri seed were 50.5% compared to 80 and 84% for L. pallida and L. lindheimeri, respectively. The HFA oil content of the hybrids ranged from 57 to 70% in A₂ and A₃ generations, and the range of values depended on the parents used in the crosses. These measurements will help predict the value of different interspecific crosses for breeding. Segregation for various yield related traits should allow selection for favorable improvements in the HFA trait and in seed yield.     

Expression of a cDNA encoding palmitoyl-acyl carrier protein desaturase from cat's claw (Doxantha unguis-cati L.) in Arabidopsis thaliana and Brassica napus leads to accumulation of unusual unsaturated fatty acids and increased stearic acid content in the seed oil

A cDNA encoding palmitoyl‐acyl carrier protein (ACP)‐desaturase from cat's claw (Doxantha unguis‐cati L.) was expressed in Arabidopsis thaliana and Brassica napus L. with the goal of decreasing the saturated fatty acid (FA) content of the seed oil. In general, transformation of Arabidopsis resulted in a greater change in the FA composition of the seed oil than for B. napus. An increase in palmitoleic acid (16:1cisΔ⁹) was obtained in transgenic lines, suggesting that the 16:0‐ACP‐desaturase cDNA was expressed in the manner originally intended. Other effects on lipid metabolism, however, were observed in the seed of transgenic plants. In Arabidopsis, there was a large increase in the proportions of cis‐vaccenic acid (18:1cisΔ¹¹) and cis‐13‐eicosenoic acid (20:1cisΔ¹³), possibly generated through elongation of 16:1cisΔ⁹. Elongation of 18:1cisΔ¹¹ to 20:1cisΔ¹³, however, was not observed in B. napus indicating that certain aspects of lipid metabolism in the model plant, Arabidopsis, may not apply to B. napus. As well, the appearance of 18:1cisΔ¹¹ was accompanied by a decrease in the proportion of oleic acid (18:1cisΔ⁹). Although the introduced ACP‐desaturase resulted in synthesis of some unsaturated FAs, the overall saturated FA content was maintained at similar levels to the control or was enhanced. Increased levels of saturation were mainly associated with an increase in stearic acid, which unlike 16:0, is considered non‐atherogenic. The results suggest that a mechanism exists further downstream in oil biosynthesis to counteract the decrease in saturation brought about by the 16:0‐ACP‐desaturase action.     

Seed colour, seed weight and seed oil content in Linum usitatissimum accessions held by Plant Gene Resources of Canada

The purpose of this study was to investigate variation of and relationships among seed colour, seed weight and seed oil content in cultivated flax (Linum usitatissimum L. ssp. usitatissimum). Seed from 2934 flax genebank accessions recently grown at Saskatoon, SK, Canada, originating from 72 countries was used to describe the variation of the seed characters. The dominant seed colour of the accessions was medium brown (2730 accessions, 93.0%), followed by yellow (126 accessions, 4.3%). Based on single observations for all accessions, the overall mean and standard deviation was 5.95 ± 1.22 mg/seed for seed weight and 38.3 ± 1.74% for oil concentration. Within three infraspecific groups of flax, seed weight, oil concentration and oil amount per seed increased in the following order: fibre flax (convar. elongatum), intermediate flax (convar. usitatissimum), large‐seeded flax (convar. mediterraneum). The world collection exceeded the range of variation of seed weight and oil concentration found in 52 North American cultivars. There was a weak, positive association of higher oil concentration with higher seed weight (r² = 0.32; P < 0.001). Yellow‐seeded flax had a higher seed weight (6.31 vs. 5.92 mg/seed) and oil concentration (39.4% vs. 38.3%) than brown‐seeded flax. There was a tendency for yellow seed colour to be associated with higher oil concentration in all seed weight classes. The results suggested that indirect selection for increased seed oil concentration in flax is possible by selection for higher seed weight and yellow seed colour.     

Genetic dissection of rice (<Emphasis Type="Italic">Oryza sativa</Emphasis> L.) tiller,plant height,and grain yield based on QTL mapping and metaanalysis

Tiller number per plant (TN) and plant height (PH) are important agronomic traits related to grain yield (GY) in rice (Oryza sativa L.). A total of 30 additive quantitative trait loci (A-QTL) and 9 significant additive × environment interaction QTLs (AE-QTL) were detected, while the phenotypic and QTL correlations confirmed the intrinsic relationship of the three traits. These QTLs were integrated with 986 QTLs from previous studies by metaanalysis. Consensus maps contained 7156 markers for a total map length of 1112.71 cM, onto which 863 QTLs were projected; 78 meta-QTLs (MQTLs) covering 11 of the 30 QTLs were detected from the cross between Dongnong422 and Kongyu131 in this study. A total of 705 predicted genes were distributed over the 21 MQTL intervals with physical length <0.3 Mb; 13 of the 21 MQTLs, and 34 candidate genes related to grain yield and plant development, were screened. Five major QTLs, viz. qGY6-2, qPH7-2, qPH6-3, qTN6-1, and qTN7-1, were not detected in the MQTL intervals and could be used as newly discovered QTLs. Candidate genes within these QTL intervals will play a meaningful role in molecular marker-assisted selection and map-based cloning of rice TN, PH, and GY.