Occurrence of canthaxanthin in Atlantic salmon, Salmo salar L., fry in Irish rivers as an indicator of escaped farmed salmon

The rapid growth of Atlantic salmon, Salmo salar L., culture in north-western Europe has given rise to concerns regarding the biological consequences of fish farm escapes on wild salmonid populations. Canthaxanthin, a carotenoid pigment additive to farmed salmon feed which is passed from females to their progeny, may be used as an indicator of the numbers of escaped farmed salmon which spawn in the wild. In the present study, thin-layer chromatography and high-performance liquid chromatography (HPLC) were used to screen emergent Atlantic salmon fry sampled from seven river catchments in Ireland for canthaxanthin. The incidence of fry containing canthaxanthin at greater than trace levels (<5% of total carotenoid pigment) was 0–4%, with an average of 1.7%, among the seven rivers sampled, indicating that the progeny of farmed salmon were present at similarly low frequencies. Canthaxanthin was detected at trace levels in an unexpectedly high proportion (35%) of salmon fry. Canthaxanthin was present at levels exceeding trace amounts in 24% of 21 non-anadromous brown trout, Salmo trutta L., sampled from six Irish rivers and present at trace levels in a further 57% of the fish, indicating that dietary canthaxanthin is freely available to salmonids in Irish rivers. The widespread presence of trace levels in salmon fry may be attributable, at least in part, to the increased sensitivity of the HPLC methods and to rapid dietary uptake during early post-emergence feeding.     

Density of brown trout, Salmo trutta L., and Atlantic salmon, Salmo salar L., parr after point and scatter stocking of fry

Atlantic salmon, Salmo salar L., and brown trout, Salmo trutta L., fry were point and scatter stocked in the early part of June at densities of 63–263 fry 100 m⁻² per species in the River Viantienjoki, a small river in northern Finland, and their population densities were assessed in late summer. Both species were always stocked together in similar quantities. Point stocking was used in the first 2 years and scatter stocking in the following 2 years. In point stocking, there was no correlation between the distance from the stocking sites (maximum = 250 m) and parr density in census sites ( r = −0.013 and 0.019 for brown trout and Atlantic salmon, respectively). The stocking density of fry did not influence parr density in August by either method or by species. Stocking density explained only from 11% to 23% of the parr survival depending on the species or stocking method. The mean densities of Atlantic salmon and brown trout parr did not differ significantly from each other at any fishing site ( P > 0.05). Both point and scatter stocking appear to be suitable methods for use in small rivers. The parr densities depend more on the other factors (e.g. habitat quality) than the stocking method, and the choice between methods could be based on the time and labour available.     

Piscine orthoreovirus‐3 is prevalent in wild seatrout (Salmo trutta L.) in Norway

In 2017, a PCR‐based survey for Piscine orthoreovirus‐3 (PRV‐3) was conducted in wild anadromous and non‐anadromous salmonids in Norway. In seatrout (anadromous Salmo trutta L.), the virus was present in 16.6% of the fish and in 15 of 21 investigated rivers. Four of 221 (1.8%) Atlantic salmon (Salmo salar L.) from three of 15 rivers were also PCR‐positive, with Ct‐values indicating low amounts of viral RNA. All anadromous Arctic char (Salvelinus alpinus L.) were PCR‐negative. Neither non‐anadromous trout (brown trout) nor landlocked salmon were PRV‐3 positive. Altogether, these findings suggest that in Norway PRV‐3 is more prevalent in the marine environment. In contrast, PRV‐3 is present in areas with intensive inland farming in continental Europe. PRV‐3 genome sequences from Norwegian seatrout grouped together with sequences from rainbow trout (Oncorhynchus mykiss Walbaum) in Norway and Coho salmon (Oncorhynchus kisutch Walbaum) in Chile. At present, the origin of the virus remains unknown. Nevertheless, the study highlights the value of safeguarding native fish by upholding natural and artificial barriers that hinder introduction and spread, on a local or national scale, of alien fish species and their pathogens. Accordingly, further investigations of freshwater reservoirs and interactions with farmed salmonids are warranted.     

Lake-use by juvenile Atlantic salmon (Salmo salar L.) and other salmonids in northern Norway

Abstract– The utilization of lakes, and inlet and outlet streams by juvenile Atlantic salmon ( Salmo salar L.), brown trout ( Salmo trutta L.) and Arctic charr ( Salvelinus alpinus (L.), were investigated in 16 watercourses northern Norway, all known to inhabit salmon stocks. In lakes, fish were caught by small mesh size gill nets, while in rivers fish were caught electrofishing. In the shallow littoral (0-3 m depth) there were juvenile salmon in 15 of 19 investigated lakes, juvenile trout in 17 and juvenile charr in seven. Trout dominated significantly in numbers in the shallow littoral of seven lakes, while salmon and charr dominated in three lakes each. When trout and salmon were frequent in the shallow littoral, charr was usually not present in this habitat, but were found in the profundal zone in most of the lakes. Atlantic salmon parr utilized both shallow and deep lakes, and used both stones and macrophytic vegetation as shelter. The utilization of lakes by salmon parr seemed to be closely related to utilization of small inlet streams for spawning. In most inlet and outlet streams salmon dominated over trout in numbers, while charr were absent. This is the first documentation of lake-use by naturally occurring salmon parr in Scandinavia.     

Piscine reovirus (PRV) in wild Atlantic salmon,Salmo salar L., and sea‐trout,Salmo trutta L., in Norway

This is the first comprehensive study on the occurrence and distribution of piscine reovirus (PRV) in Atlantic salmon, Salmo salar L., caught in Norwegian rivers. PRV is a newly discovered reovirus associated with heart and skeletal muscle inflammation (HSMI), a serious and commercially important disease affecting farmed Atlantic salmon in Norway. A cross‐sectional survey based on real‐time RT‐PCR screening of head kidney samples from wild, cultivated and escaped farmed Atlantic salmon caught from 2007 to 2009 in Norwegian rivers has been conducted. In addition, anadromous trout (sea‐trout), Salmo trutta L., caught from 2007 to 2010, and anadromous Arctic char, Salvelinus alpinus (L.), caught from 2007 to 2009, were tested. PRV was detected in Atlantic salmon from all counties included in the study and in 31 of 36 examined rivers. PRV was also detected in sea‐trout but not in anadromous Arctic char. In this study, the mean proportion of PRV positives was 13.4% in wild Atlantic salmon, 24.0% in salmon released for stock enhancement purposes and 55.2% in escaped farmed salmon. Histopathological examination of hearts from 21 PRV‐positive wild and one cultivated salmon (Ct values ranging from 17.0 to 39.8) revealed no HSMI‐related lesions. Thus, it seems that PRV is widespread in Atlantic salmon returning to Norwegian rivers, and that the virus can be present in high titres without causing lesions traditionally associated with HSMI.     

Pancreas disease in farmed Atlantic salmon, Salmo salar L., and rainbow trout, Oncorhynchus mykiss (Walbaum), in Norway

The present paper describes, for the first time, clinical signs and pathological findings of pancreas disease (PD) in farmed Atlantic salmon, Salmo salar L., and rainbow trout, Oncorhynchus mykiss (Walbaum), in sea water in Norway. Similarities and differences with reports of PD from Ireland and Scotland are discussed. Samples of 68 rainbow trout from disease outbreaks on 14 farms and from 155 Atlantic salmon from outbreaks on 20 farms collected from 1996 to 2004 were included in the present study. The histopathological findings of PD in Atlantic salmon and rainbow trout in sea water were similar. Acute PD, characterized by acute necrosis of exocrine pancreatic tissues, was detected in nine Atlantic salmon and three rainbow trout. Salmonid alphavirus (SAV) was identified in acute pancreatic necroses by immunohistochemistry. Most fish showed severe loss of exocrine pancreatic tissue combined with chronic myositis. Myocarditis was often but not consistently found. Kidneys from 40% and 64% of the rainbow trout and Atlantic salmon, respectively, had cells along the sinusoids that were packed with cytoplasmic eosinophilic granules. These cells resembled hypertrophied endothelial cells or elongated mast cell analogues. Histochemical staining properties and electron microscopy of these cells are presented. SAV was identified by RT-PCR and neutralizing antibodies against SAV were detected in blood samples.     

Chromosome polymorphism in wild Atlantic salmon, Salmo salar L., from Asturias, northern Spain

Abstract. Nine samples of Atlantic salmon, Salmo salar L., from four different rivers in Asturias (northern Spain) and three different life stages (fry, parr, adult) were karyotyped. The distributions of 2n chromosome numbers in the samples were not statistically different, suggesting the Asturian Salmo salar populations have the same chromosomal polymorphism make-up. They were, however, significantly different from populations in Scotland and Norway used to stock many Asturian rivers.     

Assessment of a semi-quantitative electric fishing sampling technique for juvenile Atlantic salmon, Salmo salar L., and trout, Salmo trutta L., in small streams

Abstract. A semi-quantitative technique of assessing trout, Salmo trutta L., and juvenile Atlantic salmon, Salmo salar L., stocks in small rivers is described and evaluated against a commonly used quantitative method. The results indicate that for 0+ and >0+ juvenile salmon and trout a log₁₀ n+1 transformed linear regression accounted for between 68.6% and 90.2% of the total variance in the relationship between the semi-quantitative and the quantitative result. The use of a categorization system is recommended and the applicability of the technique to an extensive juvenile salmonid monitoring programme is described.     

Content of synthetic astaxanthin in escaped farmed Atlantic salmon, Salmo salar L., ascending Norwegian rivers

Abstract  Isomeric ratios of astaxanthin in eggs and alevins of Atlantic salmon, Salmo salar L., have proven useful in identifying female spawners of farmed origin, but the method underestimates the proportion of fish of farmed origin. The rate of underestimation was studied by analysing astaxanthin content in tissue of 55 farmed Atlantic salmon ascending two Norwegian rivers in the autumn of 1991. The astaxanthin content fell into two distinct classes. Fifty-one per cent of the adult escaped salmon had isomeric ratios similar to salmon fed synthetic astaxanthin, whereas all the remaining fish had ratios similar to wild fish. Discriminant analysis classified 96.4% of the fish with known astaxanthin content into the correct astaxanthin class on basis of tail-fin erosion, length, weight and gill-cover damage. This discriminant function was used to estimate the astaxanthin classification of 1017 farmed salmon caught in nine rivers during 1989–1991. The classification success varied among years from 52 to 64%. Corresponding numbers for females and males were 45–48% and 54–70%, respectively. Thus, estimates of spawning rates of farmed female salmon via astaxanthin content in eggs or alevins from redds should be adjusted accordingly. The observed isomeric ratios of astaxanthin in the escaped farmed salmon and the relationship with morphology indicates that a significant proportion of the escapees ascending rivers have spent more than 1 year in the wild after escape.     

Cardiomyopathy syndrome in Atlantic salmon Salmo salar L.: A review of the current state of knowledge

Cardiomyopathy syndrome (CMS) is a severe cardiac disease affecting Atlantic salmon Salmo salar L. The disease was first recognized in farmed Atlantic salmon in Norway in 1985 and subsequently in farmed salmon in the Faroe Islands, Scotland and Ireland. CMS has also been described in wild Atlantic salmon in Norway. The demonstration of CMS as a transmissible disease in 2009, and the subsequent detection and initial characterization of piscine myocarditis virus (PMCV) in 2010 and 2011 were significant discoveries that gave new impetus to the CMS research. In Norway, CMS usually causes mortality in large salmon in ongrowing and broodfish farms, resulting in reduced fish welfare, significant management‐related challenges and substantial economic losses. The disease thus has a significant impact on the Atlantic salmon farming industry. There is a need to gain further basic knowledge about the virus, the disease and its epidemiology, but also applied knowledge from the industry to enable the generation and implementation of effective prevention and control measures. This review summarizes the currently available, scientific information on CMS and PMCV with special focus on epidemiology and factors influencing the development of CMS.     

Proliferative kidney disease in brown trout, Salmo trutta L., and Atlantic salmon, Salmo salar L., parr: histopathological and epidemiological observations

Abstract Proliferative kidney disease (PKD) has been described in cultivated rainbow trout but major outbreaks have not been recognized in other fish species. This paper describes light and electron microscope studies and presents epidemiological data of a disease condition in first summer Salmo salar parr and S. trutta , which is associated with an organism apparently identical to the aetiological agent of PKD. The pathology was found to be similar to that described for PKD in rainbow trout. The epidemiology in the brown trout suggests that exposure after May does not result in infection. The data from the outbreaks in two salmon hatcheries appear complex and suggest different susceptibilities to PKD among salmon originating from different sources.     

The effects of ration size on migration by hatchery‐raised Atlantic salmon (Salmo salar) and brown trout (Salmo trutta)

Abstract – The possibility to increase the proportion of migrating hatchery‐reared smolts by reducing their food ration was studied. Lake‐migrating, hatchery‐reared salmon (Salmo salar) and trout (Salmo trutta) smolts were either fed normal rations, based on recommendations from the fish‐farming industry, or reduced (15–20%) rations. They were released into the River Klarälven, western Sweden, and followed as they swam downstream to Lake Vänern, a distance of around 25 km. For both Atlantic salmon and brown trout, smolts fed a reduced ration migrated faster than fish fed a normal ration. Furthermore, a higher proportion of salmon smolts fed reduced rations migrated to the lake than fish fed normal rations in 2007 but not in 2006. This difference between years corresponded to greater treatment differences in size and smolt status in 2007 than in 2006. For trout, the proportion of migrating individuals and smolt development did not differ with ration size. Trout migrants fed a normal ration had a higher standard metabolic rate (SMR) than nonmigrants, whereas there was no difference in SMR between migrating and nonmigrating salmon. These results show that it is possible to use a reduced food ration to increase the migration speed of both Atlantic salmon and brown trout and to increase the proportion of migrating Atlantic salmon.     

Escaped farmed salmon, Salmo salar L., in the Glenarm River, Northern Ireland: genetic status of the wild population 7 years on

A previous study described genetic changes in a wild Atlantic salmon , Salmo salar L., population resulting from the spawning of escaped farmed salmon in the Glenarm River, Northern Ireland, in 1990. This study reports an extension of the original investigation with a further follow-up sample that was taken from the river in 1997 to assess the genetic status of the wild population two generations after the original hybridization between the wild population and the farmed strain. Overall genetic variation across eight polymorphic allozyme loci indicated that the wild population remains significantly different from the pre-escape population and from the immediate post-escape population, the presence of an allele not having been previously detected in this population ( GPI-1,2*140 ), suggesting that further incursion(s) of farmed salmon may have taken place.     

Migratory behaviour of adult wild and escaped farmed Atlantic salmon, Salmo salar L., before, during and after spawning in a Norwegian river

The migratory behaviour of adult wild and escaped farmed Atlantic salmon, Salmo salar L., before, during after spawning in the River Namsen, Norway, was analysed using radio telemetry. The fish were caught, radio tagged and released into the fjord between 7 and 25 km from the river mouth. A significantly higher proportion of wild (74%) than farmed (43%) salmon was subsequently recorded in the river. Wild salmon (33%) were more frequently captured in the sea and in rivers than farmed salmon (14%). The migration speed from release to passing a data logger 11 km upstream from the river mouth was not significantly different between wild (20.6 km day^?1) and farmed (19.8 km day^?1) salmon. Wild salmon tagged when water flow in the river was increasing had a significantly higher migration speed than wild salmon tagged when water flow was decreasing. This was not true for farmed salmon. Farmed salmon were distributed significantly higher up the river than wild salmon during spawning, although both types of fish were found together in spawning areas. Thus, there was no geographical isolation to prevent spawning between wild and escaped farmed salmon. Farmed salmon had significantly more and longer up- and downstream movements than wild salmon during the spawning period. Unlike farmed salmon, the number of riverine movements by wild salmon increased significantly when variation in water flow increased. A smaller proportion of wild (9%) than farmed (77%) salmon survived through the winter after spawning.     

Spawning of escaped farmed Atlantic salmon, Salmo salar L., in western and northern Scottish rivers: egg deposition by females

Abstract. In 1991, the progeny of female Atlantic salmon, Salmo salar L., were sampled at emergence from sites in 16 rivers in western and northern Scotland. The progeny of farmed females that had escaped from sea-cages were identified by detecting the presence of maternal canthaxanthin in the juveniles' pigment load. Canthaxanthin was detected among fish sampled from 14 of the 16 rivers examined. Overall, 109 of the 2373 fry sampled carried canthaxanthin with an average frequency over all the rivers examined of 5·1%. This value will underestimate the real frequency of occurrence of the progeny of escaped farmed salmon: some escapees do not contain canthaxanthin and male fish do not contribute to the pigment load of their progeny.     

The age structure and distribution of Atlantic salmon parr, Salmo salar L., in small tributaries and main stems of the subarctic River Teno, northern Finland

Parr of the Atlantic salmon in subarctic River Teno, northern Finland (70°N, 28°E), are found to migrate to small tributaries that are not spawning areas for the adult salmon. The age distribution of the salmon differs significantly between these brooks and the natal rivers, the parr in the brooks being typically 2–4 years old, whereas those in the main rivers were mostly of age 0–2 years. The older fish were found in the uppermost regions of the brooks. The ratio of salmon to brown trout decreases towards the upper reaches of the brooks. At least some of the young salmon overwinter in the brooks. However, the number of fish and the area inhabited diminished towards the autumn in some occasions. It is suggested that this migratory behavior may be an adaptational phenomenon that could cause variation in survival among young salmon in the River Teno.     

Application of low frequency genetic marking at GPI-3* and MDH-B1,2* loci to assess supplementary stocking of Atlantic salmon, Salmo salar L., in a Northern Irish stream

Abstract At the River Bush salmon station in Northern Ireland, a genetically marked strain of Atlantic salmon, Salmo salar L., was established, with a low frequency (0.194) of a glucose-6-phosphate isomerase genotype (GPI-3* 100/93). As part of a salmon enhancement programme, 43500 of these fish were stocked as swim-up fry into a tributary of the nearby Margy River in Spring 1990, following a baseline genetic survey which indicated an absence of the GPI–3*93 allele in the wild population. This survey also indicated a significant frequency difference of a malate dehydrogenase allele (MDH-B1,2*85) present both in the stocked and wild fish. A post-stocking electrofishing survey in summer 1990 indicated higher summerling densities in stocked sections compared with unstocked (control) sections, with an estimated survival of stocked fry to summerling ranging from 24% to 29%. Genetic analysis based on GPI-3*100/93 and MDH-B1,2*100/85 genotypes provided similar estimates of the overall contribution of stocked fish at 59.8% to 61.9%, respectively, although there was a disparity between markers in estimated contributions to stocked and control sections. A further genetic survey in 1991 estimated that 32.2% (MDH) to 69.1% (GPI) of the 1 + parr population consisted of stocked fish, the MDH-based estimate having declined greatly between summerling and 1 + parr stages. Possible reasons for the disparity of marker results are outlined, and the implications for use of low-frequency genetic marking discussed.     

Differences in longitudinal distribution patterns along a Honshu stream of brown trout <Emphasis Type="Italic">Salmo trutta</Emphasis>, white-spotted charr <Emphasis Type="Italic">Salvelinus leucomaenis</Emphasis> and masu salmon <Emphasis Type="Italic">Oncorhynchus masou</Emphasis>

Brown trout Salmo trutta were first introduced into Japan in 1892, and they currently naturally reproduce in several rivers in Honshu and Hokkaido, Japan. Although negative impacts of brown trout introductions on native salmonid fishes have been documented in some Hokkaido rivers, studies of ecological interactions between brown trout and native salmonid fishes on Honshu are limited. In this study, we describe the longitudinal distribution patterns of introduced brown trout, white-spotted charr Salvelinus leucomaenis and masu salmon Oncorhynchus masou in a 4 km stretch of a stream in central Honshu. Underwater observations were conducted in all pools within upstream, middle and downstream sections (190–400 m in length) of this stretch in order to estimate the densities of these species. Only white-spotted charr was observed in the upstream section, while brown trout and masu salmon were observed in the middle and downstream sections. Masu salmon densities, however, were much lower than brown trout densities. In the downstream section, white-spotted charr was absent. These results are consistent with results from previous studies of Hokkaido rivers, where it was found that white-spotted charr in low-gradient areas tend to be displaced by brown trout.     

Potential disease interaction reinforced: double-virus-infected escaped farmed Atlantic salmon,Salmo salar L., recaptured in a nearby river

The role of escaped farmed salmon in spreading infectious agents from aquaculture to wild salmonid populations is largely unknown. This is a case study of potential disease interaction between escaped farmed and wild fish populations. In summer 2012, significant numbers of farmed Atlantic salmon were captured in the Hardangerfjord and in a local river. Genetic analyses of 59 of the escaped salmon and samples collected from six local salmon farms pointed out the most likely source farm, but two other farms had an overlapping genetic profile. The escapees were also analysed for three viruses that are prevalent in fish farming in Norway. Almost all the escaped salmon were infected with salmon alphavirus (SAV) and piscine reovirus (PRV). To use the infection profile to assist genetic methods in identifying the likely farm of origin, samples from the farms were also tested for these viruses. However, in the current case, all the three farms had an infection profile that was similar to that of the escapees. We have shown that double-virus-infected escaped salmon ascend a river close to the likely source farms, reinforcing the potential for spread of viruses to wild salmonids.     

Recovery of Hafnia alvei from diseased brown trout,Salmo trutta L., and healthy noble crayfish,Astacus astacus (L.), in Bulgaria

Hafnia alvei was isolated in Bulgaria from healthy noble crayfish, Astacus astacus (L.), and then from farmed diseased brown trout, Salmo trutta L., with signs of haemorrhagic septicaemia. The isolates were identified initially with conventional phenotyping and commercial Merlin Micronaut and API 20E rapid identification systems, followed by sequencing of the 16S rRNA gene. Hafnia alvei Bt1, Bt2 and Aa4 were of low virulence to rainbow trout and brown trout, although cytotoxicity was demonstrated by Bt1 and Bt2, but not by Aa4.