Need for speed: Preference for fast‐flowing water by the endangered semi‐aquatic Pyrenean desman (Galemys pyrenaicus) in two contrasting streams

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How deforestation drives stream habitat changes and the functional structure of fish assemblages in different tropical regions

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Do network relationships matter? Comparing network and instream habitat variables to explain densities of juvenile coho salmon (Oncorhynchus kisutch) in mid‐coastal Oregon,USA

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The effects of wood on stream habitat and native fish assemblages in New Zealand

Historic deforestation has deprived many river systems of their natural wood loadings. To study the effects of the loss of wood from waterways, a field trial was conducted in three small forested streams in New Zealand. The objectives were to (i) examine differences in fish assemblages among wooded pools (where wood provided cover), open pools and riffles and (ii) measure the effects of wood removal on channel morphology and fish assemblages. In the first part of the study, no significant differences were found in total fish density among the three habitats. However, total fish biomass was significantly higher in wooded pools (64% of total fish biomass) compared with open pools and riffles. Mean density and biomass of banded kokopu (Galaxias fasciatus) and mean biomass of longfin eel (Anguilla dieffenbachii) were highest in wooded pools, whereas the density and biomass of bluegill bully (Gobiomorphus hubbsi) and torrentfish (Cheimarrichthys fosteri) were highest in riffles. In the second part of the study, wood was removed from a 200‐m section (treatment) in each stream, significantly reducing pool area and increasing the proportion of channel area and length in riffles. At the habitat scale, banded kokopu and large longfin eel were the two species mostly affected by wood removal. At the reach scale, banded kokopu biomass was significantly lower in the treatment sections. Although wooded pools were a small portion of total habitat, they provided important habitat for two of New Zealand's larger native fish taxa.     

Diet composition of the Italian crested newt (Triturus carnifex) in structurally different artificial ponds based on stomach contents and stable isotope analyses

1. In order to evaluate the effects of ecological disturbances, such as climate change, human‐induced habitat modification, or species introduction, and in order to adopt appropriate management policies for their conservation, knowledge of the trophic ecology of protected or threatened species is crucial. The Italian crested newt, Triturus carnifex (Laurenti, 1768), is listed in annexes II and IV of the European Habitats Directive. For this species, changes in water quality and habitat loss represent major threats, potentially impairing its breeding and feeding activities.
2. Artificial aquatic habitats, such as cattle‐drinking pools, represent valuable refuges and suitable breeding sites for T. carnifex. The aim of this study was to determine the food niche of the Italian crested newt in these habitats, evaluating its prey selection strategy in relation to a range of environmental conditions and differing availability of resources. Stomach contents (indicative of short‐term diet) and δ¹³C and δ¹⁵N signatures of tails (indicative of medium‐term diet) of adult newts from three artificial ponds in central Italy, where traditional silvo‐pastoral activities are still important, were determined. Potential prey were also sampled and processed for stable isotope analysis.
3. Triturus carnifex, similar to other newt species, is an opportunistic predator, feeding on a wide variety of prey that includes terrestrial and aquatic macroinvertebrates. In particular, the opportunistic use of temporally available small zooplankton was identified from stomach contents analysis. Conversely, stable isotope analysis highlighted the consumption of larger, soft‐bodied prey that the stomach‐contents‐based approach underestimated. These included terrestrial oligochaetes, which turned out to be the most important and energy‐rich food source in the medium term.
4. These results emphasize the usefulness of combined approaches for studying the trophic ecology of salamanders and also highlight the importance of the integrated management of aquatic breeding habitats and neighbouring terrestrial habitats, as sources of food, for newt conservation.

     

Summer habitat use and feeding of juvenile Arctic charr,Salvelinus alpinus,in the Canadian High Arctic

Abstract – Owing to limited knowledge of the habitat use and diet of juvenile Arctic charr from the High Arctic, particularly young‐of‐the‐year (YOY), we assembled data obtained from samples taken in and around Lake Hazen, Nunavut, Canada, to assess juvenile habitat use and feeding. Juvenile charr demonstrated a preference for stream environments, particularly those fed by warm upstream ponds. Charr occupying both stream and nearshore lake habitats were found to feed similarly, with chironomids occurring most frequently in diets. Some older stream‐dwelling charr preyed on smaller, younger Arctic charr. Preferred stream occupancy is likely mediated by physical barriers created mainly by water velocity, and by distance from the lake, lake‐ice dynamics, low water depth, and turbidity. Water velocities resulted in stream habitat segregation by size, with YOY mainly found in low‐velocity pools and back eddies adjacent to stream banks, but not in water velocities >0.1 m·s^?1. Greatest charr densities in streams were found in small, shallow, slow‐flowing side channels, which are highly susceptible to drought. Under predicted climate change scenarios, streams fed by small ponds will be susceptible to intermittent flow conditions, which could result in increased competition among juvenile charr for the remaining stream habitats. In addition, glacier‐fed streams are likely to experience increased flow conditions that will exacerbate physical barriers created by water velocity and further reduce the availability of preferred stream habitat.     

Defining critical habitat conditions for the conservation of three endemic and endangered cyprinids in a Mediterranean intermittent river before the onset of drought

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Biodiversity value of remnant pools in an intermittent stream during the great California drought

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Changes to freshwater mussel assemblages after 25 years of impoundment and river habitat fragmentation

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Factors affecting habitat selection by a small spawning charr population, bull trout, Salvelinus confluentus: implications for recovery of an endangered species

Bull trout, Salvelinus confluentus (Suckley), populations are declining in many streams of North America and are listed under the Endangered Species Act in the United States. Many small populations are isolated in fragmented habitats where spawning conditions and success are not well understood. Factors affecting habitats selected for redds by spawning bull trout and redd habitat characteristics within Gold Creek, a headwater stream in the Yakima River within the Columbia River basin, Washington State, USA, were evaluated. Most spawning (>80% of the redds) occurred in upstream habitats after dewatering of downstream channels isolated fish. Habitats were selected or avoided in proportions different to their availability. For example, most bull trout selected pools and glides and avoided riffles despite the latter being more readily available. Although preferences suggest influences of prolonged fish entrapment, site fidelity could be important. A habitat with redds commonly contained abundant cover, gravel substratum and higher stream flows. The major factors influencing habitat selection by spawning fish and their persistence in streams of the Yakima and Columbia River regions include entrapment of fish by dewatering of channels and geographical isolation by dams. The goal of the US Government's recovery plan is ‘to ensure the long‐term persistence of self‐sustaining bull trout populations’. Recovery plans linked to provisions for protecting and conserving bull trout populations and their habitats were recommended. Landscape approaches are needed that provide networks of refuge habitats and greater connectivity between populations. Concurrent recovery efforts are encouraged to focus on protecting small populations and minimizing dangers of hybridization.     

Diet of blue cod,Parapercis colias,living on undisturbed biogenic reefs and on seabed modified by oyster dredging in Foveaux Strait,New Zealand

• 1. Little has been done to assess the potential impact of habitat modification by bottom fishing gear on the feeding habits of demersal fishes. An analysis is presented of the diet of blue cod in Foveaux Strait, southern New Zealand, based on the gut content of fish taken in winter 1999 from two sites where each site consisted of both undisturbed biogenic reefs and reefs modified by oyster dredging.
• 2. Of the 420 guts collected, 13% were empty. The overall mean wet weight of gut content was <4 g. No significant habitat or site effects were detected for the proportion of empty guts or the amount of food consumed.
• 3. A pattern was detected that blue cod on dredged habitats generally fed on more crustaceans than those on undistributed habitats. Blue cod from undisturbed habitat also displayed a more diverse diet than those taken from dredged habitat. These results suggest that long‐term disturbance of seabed habitat by the oyster fishery in Foveaux Strait has caused changes to the diet of blue cod. The findings also suggest that actions should be taken to protect the biogenic reefs from further damage if the blue cod fishery and related resources are to be effectively managed.
• 4. Changes in prey diversity with increasing fish size were also found, with prey diversity (Shannon–Wiener index) increasing from 0.83 to 1.35 over a range of fish size from <25 cm to larger than 34 cm. A total of 52 prey taxa were identified in the diet of blue cod. Crustaceans were the main component, followed by mollusca and polychaeta. Fish, echinodermata and ‘other’ were less important in the diet.

Copyright © 2002 John Wiley & Sons, Ltd.     

The local responses of aquatic ecosystems to adjacent grassland conservation: Can streams of dreams exist in a degraded riverscape?

1. Landscape homogenization and the removal of riparian areas have altered stream ecosystems worldwide. Numerous conservation programmes attempt to improve water quality and increase instream habitat heterogeneity to elicit desired biological responses. However, the effectiveness of many conservation efforts on isolated stream fragments remains unknown, especially in grassland regions.
2. The effects of grassland conservation practices and the re-establishment of riparian corridors in the James River basin, South Dakota (USA) on stream water quality, habitat availability and aquatic macroinvertebrate and fish assemblages were studied in an agriculturally dominated prairie landscape.
3. Grassland conservation efforts may have repaired riparian condition, reduced turbidity and created more diverse instream habitat complexes at conservation sites based on comparisons with paired reference reaches. Reference sites were relatively homogeneous, with prevalent siltation, bank erosion and disturbances to the riparian vegetation. Owing to significant riparian vegetation development, overhanging and aquatic vegetation, benthic detritus and woody materials were significantly more common at conservation reaches.
4. Restoration efforts that assume ‘if you (re-)build it, they will come’ (i.e. the ‘field of dreams’ hypothesis) underestimate other important barriers to biodiversity restoration in dynamic, grassland riverscapes. Although aquatic organisms in grassland ecosystems are adapted to rapidly inhabit available habitats, the development of niche space at conservation reaches did not directly result in colonization by aquatic life.
5. Grassland management actions did not address stream connectivity issues or overcome land use influences elsewhere in the riverscape that may govern the responses of aquatic macroinvertebrates and fish. Stream fragmentation and continuing, damaging land use patterns seemed to exceed the positive effects of restoring isolated stream reaches in these heavily degraded catchments. Catchment-scale management strategies that combine reach-level restoration actions with efforts to improve connectivity are likely to be more successful in degraded riverscapes.

     

Contrasting biodiversity and food web structure of three temporary freshwater habitats in a tropical biodiversity hotspot

1. In many biomes, a variety of different small freshwater habitats, such as pools and phytotelmata can occur together in the same habitat matrix. However, both the biodiversity and the functioning of these ecosystems remain poorly known.
2. Three freshwater habitat types in a tropical West African biodiversity hotspot were studied.
3. The study demonstrated that animal communities in water-filled tree holes, temporary ponds and granite rock pools were strongly differentiated with exclusive faunas despite their spatial proximity and similar disturbance in the form of seasonal drought.
4. In particular, granite rock pools stood out with a high gamma diversity. Rock pools were also functionally different from the other two habitat types. The three habitats had contrasting predator assemblages, a differential reliance on primary production and different concentrations of available nutrients.
5. The work illustrates that the biodiversity and functions of small temporary freshwater habitats can be strongly differentiated. This shows the unique and potentially complementary roles that these habitats can fulfil in mediating fluxes of energy and nutrients and preserving aquatic biodiversity in landscapes.
6. Temporary aquatic habitats are typically overlooked in conservation policy and local management plans despite being threatened by habitat transformation. In addition, livestock can threaten savanna ponds, wood exploitation can threaten tree holes, and mining and sediment disruption can threaten rock pools. Hence, better knowledge about the ecological functioning of these ecosystems is vital to the implementation of effective conservation strategies.

     

Diel variation in stream fish habitat suitability criteria: implications for instream flow assessment

• 1. Habitat suitability criteria that fail to incorporate temporal variability in habitat preferences of stream fish may mis‐represent critical habitat requirements and lead to setting of inappropriate flow targets when used in instream flow assessments. Developing suitability criteria from daytime observations alone relies on the assumption that habitat preferences are constant over the diel cycle. Few studies have tested these assumptions, particularly for small‐bodied, cryptic, benthic species.
• 2. During summer in two gravel‐bed rivers, bluegill bullies (Gobiomorphus hubbsi), torrentfish (Cheimarrichthys fosteri) and upland bullies (Gobiomorphus breviceps) exhibited strong preferences with respect to water depth, velocity and substratum size. All three species underwent a diel shift in microhabitat preference for at least two of these variables.
• 3. Microhabitat preferences were generally weaker when fish were active at night; bluegill bullies, upland bullies and especially torrentfish were observed over a broader range of depths, velocities and substratum sizes at night than during the day. Observations of fish in a stream simulator confirmed that bluegill bullies and torrentfish showed a preference for runs at dusk and return to riffles before dawn, but habitat preferences of upland bullies remained static across the diel cycle.
• 4. Diel microhabitat shifts affected the assessment of flow requirements. Instream habitat analysis of the Waipara River using separate day and night suitability criteria predicted differing amounts of habitat available at a given flow, and the relationships between fish abundance, fish density and flow. The presence of diel microhabitat shifts in stream fishes suggests that instream habitat analyses will produce more effective and defensible flow recommendations when patterns of nocturnal microhabitat preferences are known and critical habitat bottlenecks can be identified. Copyright © 2011 John Wiley & Sons, Ltd.

     

Conservation value of waterfalls as habitat for lotic insects of western Victoria,Australia

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Longitudinal distribution of uncommon fishes in a species‐rich basin

1. The spatial organization of fishes in a river system was investigated to evaluate the longitudinal distribution of uncommon species. It was anticipated that overall richness of the fish community would increase in a downstream direction together with habitat extent, but that more uncommon species would occur upstream owing to greater heterogeneity among sites.
2. Fish were collected between 1995 and 2014 at 85 sites distributed throughout the Duck River Basin, Tennessee, USA. A site usually consisted of four habitat types: riffles, runs, pools and shoreline. Each habitat type was sampled with a multipass electrofishing protocol.
3. In all, 136 native fish species were collected. Of these, 71% were classified as uncommon but represented only 16% of the total count of fish collected. As expected, overall species richness increased downstream, but contrary to expectation, uncommon species did too. Some uncommon species were restricted exclusively to tributaries and headwaters, some to tributaries and mainstem, many to mainstem only, but the largest fraction of uncommon species occurred throughout the basin, but even this last group increased in richness downstream.
4. Conservation often focuses on uncommon species. This study suggests that a greater number of uncommon species can be conserved with an emphasis on large downstream reaches, which not only include more aquatic habitat to support larger concentrations of fish, but also shelter the uncommon species that tend to require the most protection.

     

Effects of habitat and internal prey subsidies on juvenile coho salmon growth: implications for stream productive capacity

Abstract –  To evaluate the effects of habitat, foraging strategy (drift vs. limnetic feeding) and internal prey subsidies (downstream transport of invertebrate drift between habitats) on fish production, we measured the growth of juvenile coho salmon confined to enclosures in flowing (pond inlets and outlets) or standing water (centre of pond) habitats in a constructed river side-channel. The effects of habitat and foraging strategy on fish growth were mediated primarily through habitat effects on prey abundance. Invertebrate drift biomass was nearly an order of magnitude higher at pond inlets relative to outlets. Drift-feeding coho in inlet enclosures grew 50% faster than drift-feeding coho at pond outlets or limnetic feeding coho in the centre of ponds, suggesting that elevated drift at inlets was sufficient to account for higher inlet growth rates. Forty per cent of prey biomass in stomachs was terrestrial in origin. These results indicate that, in addition to dependence on external terrestrial subsidies, streams with alternating slow and fast water (i.e., pool-riffle) sequences are also characterised by internal prey subsidies based on transport of drifting invertebrates from refuge habitats (high velocity riffles) to habitats more suitable for drift-feeding predators (e.g., pools), which may result in higher maximum fish growth in systems where internal subsidises are large. Restoration of small streams to maximise productive capacity for pool-rearing salmonids will require a better understanding of the length and interspersion of habitats that maximises both internal prey subsidies and available rearing habitat for juvenile salmon.     

Feeding strategy of the non‐native rainbow trout,Oncorhynchus mykiss,in low‐order Patagonian streams

The dietary composition and feeding strategy of rainbow trout, Oncorhynchus mykiss (Walbaum), in two low‐order Patagonian streams were studied. Benthic macroinvertebrate availability was estimated in both riffles and pools. Fish stomach contents were examined to determine prey richness and diversity, prey electivity, food‐niche width, and the feeding strategy employed by trout throughout the year. Availability of benthos varied seasonally with Ephemeroptera, Trichoptera, Plecoptera and Diptera species dominating. Rainbow trout diet was composed mainly of benthic macroinvertebrates, followed by terrestrial insects, fish, algae and plants. Different trout size classes segregated the use of food resources to reduce predation pressure. Elected prey included organisms displaying no to high mobility. A high feeding plasticity allows trout to buffer changes in food availability by switching from a specialised to a generalised feeding behaviour. Consequently, trout may exploit abundant but temporary food resources opportunistically, which would explain their marked expansion in Patagonian environments.     

Habitat selection by rainbow trout Oncorhynchus mykiss in a California stream: implications for the Instream Flow Incremental Methodology

We quantified microhabitat selection of rainbow trout (Oncorhynchus mykiss) at 2 flows (low= 1.13 m³. s^?1 and high =4.95 m³. s^?1) in the Pit River, California. Flows were controlled by an upstream dam and habitat availability was similar during 4 sampling periods at low flow and 2 periods at high flow. A principal components analysis reduced 6 microhabitat variables to 3 new variables that explained 80% of the observed variance. The 3 components loaded heavily on velocity variables, depth variables and substrate. Microhabitat selection generally differed among macrohabitats (i. e., pools, runs, and riffles). Rainbow trout selected different microhabitats at high flow relative to low flow in response to the availability of deeper, faster water. At low flow, depth and velocity selection were positively correlated with seasonal temperature change for adults but not juveniles. Rainbow trout apparently sought shelter in interstitial spaces in the substrate of runs and riffles during the day in early winter. Generally, large rainbow trout were observed in pools, intermediate-sized fish in runs, and small trout in riffles. The largest fish occurred in slow, deep areas of pools, where they moved slowly without orientation to flow and were not observed feeding, whereas small fish generally faced upstream and fed in all habitat types. Foraging forays were directed up in the water column at velocities similar to the mean water column velocities at holding positions. Rainbow trout were the most abundant species in 76% of the population survey stations. Other species that might have influenced microhabitat selection by rainbow trout were uncommon.