Limnological perspectives on conservation of floodplain lakes in the Amazon basin

1. Limnological aspects of Amazon floodplain lakes are examined in the context of aquatic conservation.
2. A prerequisite to detecting and evaluating changes that could threaten the ecological health and organisms in floodplain lakes is understanding variation under present conditions. Based on one of the few studies with regular measurements over 2 years, chlorophyll, total phosphorus, dissolved oxygen, transparency, and total suspended solids in Lake Janauacá indicate that the lake is naturally quite variable with a mesotrophic to eutrophic status.
3. Direct threats to ecological health of floodplain lakes include mining operations that can increase turbidity and trace metals and reduce nutritional quality of sediments. Mercury contamination and methylation leads to bioaccumulation in aquatic organisms.
4. Deforestation in uplands increases nitrogen and phosphorus inputs to floodplain lakes and can alter trophic status. Deforestation in floodable forests alters the habitat and food of the fish that inhabit these forests.
5. Cumulative limnological responses as catchments are altered by urban, agricultural, and industrial developments, and as inundation is altered by changes in climate and construction of dams, have major implications for the ecology of floodplain lakes.
6. To improve understanding and management of threats to the conservation of aquatic Amazon biota and ecosystems requires considerably expanded and coordinated research and community-based management that includes the spectrum of floodplain lakes throughout the basin.

     

Vulnerability of the biota in riverine and seasonally flooded habitats to damming of Amazonian rivers

1. The extent and intensity of impacts of multiple new dams in the Amazon basin on specific biological groups are potentially large, but still uncertain and need to be better understood.
2. It is known that river disruption and regulation by dams may affect sediment supplies, river channel migration, floodplain dynamics, and, as a major adverse consequence, are likely to decrease or even suppress ecological connectivity among populations of aquatic organisms and organisms dependent upon seasonally flooded environments.
3. This article complements our previous results by assessing the relationships between dams, our Dam Environmental Vulnerability Index (DEVI), and the biotic environments threatened by the effects of dams. Because of the cartographic representation of DEVI, it is a useful tool to compare the potential hydrophysical impacts of proposed dams in the Amazon basin with the spatial distribution of biological diversity. As the impact of Amazonian dams on the biota of both rivers and periodically flooded riparian environments is severe, DEVIs from different Amazonian tributary basins are contrasted with patterns of diversity and distribution of fish, flooded forest trees and bird species.
4. There is a consistent relationship between higher DEVI values and the patterns of higher species richness and endemism in all three biological groups. An assessment of vulnerability at the scale of tributary basins, the assessment of biodiversity patterns related to DEVI, and the analysis of teleconnections at basin scale, demonstrate that recent construction of dams is affecting the biota of the Amazon basin.
5. The evidence presented here predicts that, if currently planned dams are built without considering the balance between energy production and environmental conservation, their cumulative effects will increase drastically and represent a major threat to Amazonian biodiversity.

     

The representativeness of protected areas for Amazonian fish diversity under climate change

1. The Amazon basin has been subjected to extreme climatic events and according to climate change projections this hydrosystem could face changes in the natural dynamic of flood cycles that support the feeding and reproduction of many fish species, threatening aquatic biodiversity.
2. Protected areas (PAs) are the main tools used to safeguard the biodiversity in the long term; however, they are fixed areas that could be subject to climate change, questioning their future efficiency in protecting biodiversity.
3. The Amazon basin currently benefits from a relatively high level of protection as 52% of its catchment area is under the form of true PAs or indigenous lands. However, the capacity of these PAs to protect freshwater biodiversity remains unclear as they have generally been assessed with little regard to freshwater ecosystems and their hydrological connectivity. Here, the aim was to evaluate the effectiveness of PAs in representing the Amazon fish fauna under current and future climatic conditions.
4. A macroecological approach was used to estimate the minimum size of the geographical range needed by each species to achieve long-term persistence, by a combined function of range size and body size, two ecological traits known to influence species extinction risk.
5. In future the Amazon basin could risk losing 2% of its freshwater fish fauna owing to unsuitable climatic conditions, with a further 34% adversely affected. The present Amazon network of PAs will cover the minimum required range for species persistence for more than 60% of the freshwater fish species analysed under the future climate scenario. However, more than 25% of the future susceptible species are currently concentrated in large tributaries and in the central-lower Amazon floodplain where few PAs occur, highlighting the lack of appropriate conservation actions for these specific water bodies.

     

The shadow of the Balbina dam: A synthesis of over 35 years of downstream impacts on floodplain forests in Central Amazonia

1. The Balbina hydropower dam in the Central Amazon basin, established in the Uatumã River in the 1980s, is emblematic for its socio-environmental disaster. Its environmental impacts go far beyond the reservoir and dam, however, affecting the floodplain forests (igapó) in the downstream area (dam shadow), which have been assessed using a transdisciplinary research approach, synthesized in this review.
2. Floodplain tree species are adapted to a regular and predictable flood pulse, with high- and low-water periods occurring during the year. This was severely affected by the operation of the Balbina dam, which caused the suppression of both the aquatic phase at higher floodplain elevations and the terrestrial phase at lower floodplain elevations (termed the ‘sandwich effect’).
3. During the period of construction and reservoir fill, large-scale mortality already occurred in the floodplains of the dam shadow as a result of reduced stream flow, in synergy with severe drought conditions induced by El Niño events, causing hydraulic failure and making floodplains vulnerable to wildfires.
4. During the operational period of the dam, permanent flooding conditions at low topographical elevations resulted in massive tree mortality. So far, 12% of the igapó forests have died along a downstream river stretch of more than 125 km. As a result of flood suppression at the highest elevations, an encroachment of secondary tree species from upland (terra firme) forests occurred.
5. More than 35 years after the implementation of the Balbina dam, the downstream impacts caused massive losses of macrohabitats, ecosystem services, and diversity of flood-adapted tree species, probably cascading down to the entire food web, which must be considered in conservation management.
6. These findings are discussed critically, emphasizing the urgent need for the Brazilian environmental regulatory agencies to incorporate downstream impacts in the environmental assessments of several dam projects planned for the Amazon region.

     

Science for conserving Amazon freshwater ecosystems

1. The Amazon Basin is being degraded at unprecedented rates, yet conservation efforts have implemented protected areas to curb deforestation, leaving freshwater ecosystems vulnerable to degradation. Amazon freshwater ecosystems are largely unprotected because a terrestrial bias has limited the ability of science to affect policy.
2. Overcoming this bias requires increasing exchange of information among stakeholders across the basin to raise awareness of threats to Amazon freshwater ecosystems and promote discussions and access to conservation solutions. To help address this need, this Special Issue collates 15 synthetic articles that advance knowledge and identify conservation solutions.
3. Three articles highlight the importance of considering the hydrological and limnological processes that control the integrity of these freshwater ecosystems and offer new insights on how to extrapolate them across the basin.
4. Three articles on crocodilians, aquatic mammals, and migratory fishes document threats and knowledge gaps, and identify the missing role of governments as an impediment to conservation of their populations.
5. Three articles evaluate the multi-faceted effects of hydropower dams on fish, birds, and floodplain trees. They reinforce perceptions that dams are key environmental threats and offer guidance for improving protocols for dam site selection and impact assessment.
6. Three articles assessing the effectiveness of protected areas to safeguard fish and aquatic invertebrates show there is an urgent need to redesign the Amazon protected area network to adequately protect freshwater biota.
7. Three forward-looking articles show that: (i) conservation initiatives by local communities are ‘bright spots’ for freshwater conservation; (ii) microchemistry analyses of the ear bones of fishes could boost the knowledge base needed to conserve them; and (iii) strengthening the Amazon conservation framework requires a reversal of Brazil's current governmental priorities, remobilization of stakeholders, investments in capacity building, and expanding protections to terrestrial and freshwater ecosystems.

     

Integrating freshwater wetland science into planning for Great Barrier Reef sustainability

1. The paper ‘Biodiversity values of remnant freshwater floodplain lagoons in agricultural catchments: evidence for fish of the Wet Tropics bioregion, northern Australia’, published in Aquatic Conservation: Marine and Freshwater Ecosystems in 2015, has contributed in several ways to the integration of freshwater wetland science within new catchment management policies and practices for Great Barrier Reef (GBR) sustainability.
2. The Tully–Murray biodiversity study developed novel protocols to sample larval, juvenile, and adult fish life‐history stages in floodplain lagoons using a combination of boat‐based backpack electrofishing and fyke netting. In addition, hydrological and hydrodynamic models were applied in a completely new way to quantify the timing, extent, and duration of water connectivity across floodplain streams, cane drains, and wetlands. Combining the two novel approaches enabled an analysis of lagoon fish assemblage patterns in relation to environmental gradients, especially floodplain hydrology, connectivity patterns, and measures related to agricultural land use.
3. In demonstrating the importance of different levels of connectivity for different biodiversity outcomes in freshwater floodplain lagoons of the Tully–Murray catchment, the subject paper established that floodplain connectivity needs to be taken into consideration in wetland management practices.
4. The timing of the subject publication was fortuitous. It coincided with the preparation of the evidence‐based 2017 Scientific Consensus Statement on land‐based water quality impacts on the GBR. As one of the few freshwater wetland ecology publications for the catchments of the GBR at that time, this paper played an important role in demonstrating freshwater wetland values, fish conservation options, and management imperatives to sustain wetland ecological health and services in GBR catchments.
5. By advancing the understanding of factors driving biodiversity patterns, and the importance of connectivity and ecohydrological processes in freshwater floodplain wetlands of the GBR catchment, the Tully–Murray study helped to drive new policy directives for the protection and restoration of catchment, floodplain, and estuary functions, and connectivity, now embedded in the Reef 2050 Long‐Term Sustainability Plan 2018, an overarching strategy for managing the GBR over the next 35 years, and complementary Queensland environmental legislation.

     

Connectivity,habitat, and flow regime influence fish assemblage structure: Implications for environmental water management in a perennial river of the wet–dry tropics of northern Australia

1. Environmental water management seeks to balance competing demands between the water needed to sustain human populations and their economic activities and that required to sustain functioning freshwater ecosystems and the species they support. It must be predicated on an understanding of the environmental, hydrological, and biological factors that determine the distribution and abundance of aquatic species.
2. The Daly River of the wet–dry tropics of northern Australia consists of a perennially flowing main stem and large tributaries, as well as many small to large naturally intermittent tributaries, and associated off‐channel wetlands. Increased groundwater abstraction to support irrigated agriculture during the dry season threatens to reduce dry‐season flows that maintain perenniality and persistence of freshwater fishes.
3. Fish assemblages were surveyed at 55 locations during the dry season over a 2‐year period with the goal of establishing the key landscape‐scale and local‐scale (i.e. habitat) drivers of fish species distribution.
4. Longitudinal (upstream/downstream) and lateral (river/floodplain) gradients in assemblage structure were observed with the latter dependent on the position in the river landscape. Underlying these gradients, stream flow intermittency influenced assemblage composition, species richness, and body size distributions. Natural constraints to dispersal were identified and their influence on assemblage structure was also dependent on position within the catchment.
5. Eight distinct assemblage types were identified, defined by differences in the abundance of species within five groups differing in functional traits describing body size, spawning requirements, and dispersal capacity. These functional groups largely comprised species widely distributed in northern Australia.
6. The results of the study are discussed with reference to the environmental flow needs of the Daly River and other rivers of northern Australia. The findings may also be applied to environmental flow management in savannah rivers elsewhere.

     

Assessing the relative impacts of land‐use change and river regulation on Burdekin River (Australia) floodplain wetlands

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Ecology and conservation of grassy wetlands dominated by spiny mud grass Pseudoraphis spinescens in the southern Murray–Darling Basin,Australia

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Spatial patterns of lacustrine fish assemblages in a catchment of the Mississippi Alluvial Valley

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Connectivity between lentic and lotic freshwater habitats identified as a conservation priority for coho salmon

1. Juvenile Pacific salmon exhibit diverse habitat use and migration strategies to navigate high environmental variability and predation risk during freshwater residency. Increasingly, urbanization and climate-driven hydrological alterations are affecting the availability and quality of aquatic habitats in salmon catchments. Thus, conservation of freshwater habitat integrity has emerged as an important challenge in supporting salmon life-history diversity as a buffer against continuing ecosystem changes.
2. To inform catchment management for salmon, information on the distribution and movement dynamics of juvenile fish throughout the annual seasonal cycle is needed. A number of studies have assessed the ecology of juvenile coho salmon (Oncorhynchus kisutch) during summer and autumn seasons; catchment use by this species throughout the annual cycle is less well characterized, particularly in high-latitude systems.
3. Here, n = 3,792 tagged juvenile coho salmon were tracked throughout two complete annual cycles to assess basin-wide distribution and movement behaviour of this species in a subarctic, ice-bearing catchment.
4. Juvenile coho salmon in the Big Lake basin, Alaska, exhibited multiple habitat use and movement strategies across seasons; however, summer rearing in lotic mainstem environments followed by migration to lentic overwinter habitats was identified as a prominent behaviour, with two-thirds of tracked fish migrating en masse to concentrate in a small subset of upper catchment lakes for the winter. In contrast, the most significant tributary overwintering site (8% of tracked fish) occurred below a culvert and dam, blocking juvenile fish passage to a headwater lake, indicating that these fish may have been restricted from reaching preferred lentic overwinter habitats.
5. These findings emphasize the importance of maintaining aquatic connectivity to lentic habitats as a conservation priority for coho salmon during freshwater residency.

     

Development of an accurate model to predict the phenology of Atlantic salmon smolt spring migration

1. Changes in migration timing, resulting from the alteration in river continuity or the effect of climate change, can have major consequences on the population dynamics of diadromous fish. Forecasting the phenology of fish migration is thus critically important to implement management actions aimed at protecting fish during their migration.
2. In this study, an 11‐year monitoring survey of Atlantic salmon smolts (Salmo salar) from the Ourthe River, Belgium, was analysed within a European Special Area of Conservation to improve the understanding of environment‐induced spring migration. A logistic model was fitted to forecast smolt migration and to calculate phenological indicators for management, i.e. the onset, end, and duration of migration, while accounting for the influence of photoperiod, water temperature, and hydrological conditions.
3. The results indicated that the photo‐thermal units accumulated by smolts above a 7°C temperature threshold was a relevant proxy to reflect the synergistic effect between temperature and photoperiod on smolt migration. After integrating the effect of river flow pulses, the model accurately explained the inter‐annual changes in migration timing (R² = 0.95). The model predictions provide decisive management information to identify sensitive periods during which mitigation measures (e.g. hydropower turbine shutdown, river discharge management) should be conducted to promote smolt survival.
4. The model was used to predict phenological characteristics under future scenarios of climate change. The results suggest a joint effect of hydrological alterations and water warming. Temperature increases of 1–4°C were associated with earlier initiation of migration, 6–51 days earlier, and spring flood events greatly influenced the duration of the migration period. Accordingly, the combined effects of human‐induced modifications of the hydrological regimes and increasing temperatures could result in a mismatch between the smolt and favourable survival conditions in the marine environment.

     

Promoting connectivity between priority freshwater sites for conservation in intermittent hydrological systems

1. Systematic conservation planning in freshwater ecosystems faces multiple challenges because of the dynamic nature of rivers and their multiple dimensions of connectivity. In intermittent hydrological systems connectivity is functional when water is available, allowing the exchange of aquatic individuals between isolated freshwater ecosystems. Integrating these isolated systems in their hydrological context is essential when identifying priority areas for conservation, in order to try to minimize the propagation of threats into target water bodies (management units) from the surrounding landscape.
2. Here, the use of a systematic planning approach is demonstrated to identify a set of priority management units to preserve freshwater biodiversity in an arid system of fragmented water bodies immersed in a landscape subject to a range of impacts.
3. Twenty-six water-dependent taxa from 59 mountain rock pools (gueltas) of three southern Mauritanian mountains were used as a case study. A conservation planning tool (marxan ) was used to find priority conservation areas to integrate intermittent hydrological systems in their hydrological context, promote connectivity, and minimize the downstream propagation of threats. Three types of connectivity were analysed: (i) no connectivity, (ii) connectivity between gueltas, and (iii) connectivity between gueltas and sub-catchments.
4. Considering different types of longitudinal connectivity affects the number and spatial allocation of the priority gueltas selected, and the conservation status of the gueltas and their upstream areas. Incorporating connections between gueltas and upstream locations in the modelling resulted in the selection of gueltas in areas with a low human footprint and in the increased connectivity of the solutions.
5. The results obtained revealed important locations for local biodiversity conservation, and the method presented can be used when assessing the propagation of potential waterborne threats into isolated management units. The framework developed allows connectivity to be addressed in conservation planning. It can be replicated in regions with similar isolated habitats that connect through intermittent hydrological systems and can also be applied to lateral and vertical hydrological connectivity.

     

Small mountain reservoirs in the Alps: New habitats for alpine freshwater biodiversity?

1. Today, aquatic biodiversity suffers from many pressures linked to human activities, including climate change, which particularly affects alpine areas. Many alpine freshwater species have shifted their geographical distribution to colder areas, but a reduced availability of suitable habitats is also forecasted. New artificial water bodies could provide habitat enhancement opportunities, including small mountain reservoirs built to overcome a lack of snow during winter.
2. To investigate the role of reservoirs as a habitat for freshwater invertebrates, a case study was conducted on eight reservoirs in the Swiss Alps. The study aimed to compare the water quality and freshwater biodiversity of the reservoirs with those of 39 natural and newly excavated ponds. Data were collected on physico‐chemistry, freshwater habitat structure, and aquatic insects (dragonflies and aquatic beetles).
3. The study showed that the mountain reservoirs investigated did not differ from natural ponds in terms of surface area, conductivity, and trophic level. Similarly to natural ponds, reservoirs showed signs of impairment owing to surface run‐off carrying pollutants linked to ski tourism. They presented a low diversity of mesohabitats, and in particular lacked vegetation. Compared with natural ponds, the species richness in reservoirs was lower for dragonflies but not for beetles. At the regional scale, the community from the reservoirs was a subset of the natural ponds community, supporting 38% of the regional species richness for these two insect groups.
4. The results suggest that mountain reservoirs are likely to be important for biodiversity in alpine areas, both as habitats and as stepping stones for species shifting their geographical range. These water bodies can be enhanced further by some nature‐friendly measures to maximize benefits for biodiversity, including margin revegetation or the creation of adjacent ponds. Ecological engineering needs to be innovative and promote freshwater biodiversity in artificial reservoirs.

     

Is current floodplain management a cause for concern for fish and bird conservation in Bangladesh's largest wetland?

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Floods,drying, habitat connectivity,and fish occupancy dynamics in restored and unrestored oxbows of West Central Iowa,USA

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Riverine spawning,long distance larval drift,and floodplain recruitment of a pelagophilic fish: A case study of golden perch (Macquaria ambigua) in the arid Darling River,Australia

1. Pelagic spawning riverine fish (pelagophils) spawn in free‐flowing river habitats with downstream drift of eggs and larvae but the spatial scale is often unknown, and this constitutes a major ecological knowledge gap.
2. In the arid Darling River in south‐eastern Australia, the present objectives were: (i) to determine the potential downstream dispersal distance of young golden perch (Macquaria ambigua); and (ii) to evaluate whether provision of environmental water enhanced dispersal of young fish from Menindee Lakes to the lower Darling River (LDR) while also cueing further spawning in downstream lotic reaches.
3. Golden perch spawned in unregulated lotic tributaries on a flood pulse and larvae drifted or dispersed >1,600 km downstream and entered large ephemeral productive floodplain lake nursery habitats as fully scaled fingerlings.
4. Planned releases of environmental water cued golden perch spawning in the LDR and enabled juvenile fish to disperse downstream from the Menindee Lakes nursery into receiving populations in the LDR, Great Darling Anabranch, and southern Murray River, with some fish potentially completing an active migration of >2,100 km by age 1 year.
5. The Darling River case study highlights the need for a system‐scale approach to the conservation management of pelagophilic fish, along with multi‐year perennial flow strategies to improve ecosystem integrity in large rivers globally.

     

Determinants of large-scale spatial distribution and seasonal microhabitat selection patterns of the endangered freshwater blenny Salaria fluviatilis in the Ebro River basin,Spain

1. The freshwater blenny Salaria fluviatilis is an endangered fish species with populations that are in rapid decline, largely owing to habitat degradation caused by human activity. This situation highlights the urgent need to develop measures for the conservation and recovery of the species based on a deep understanding of its specific habitat requirements.
2. In this study, spatial distribution and habitat selection patterns were investigated to determine the limiting factors for the species at different times of the year and at different spatial scales, from macro to microhabitats.
3. The presence of the freshwater blenny was assessed at 127 sites in the Ebro River basin, Spain, between 2002 and 2012. It was only detected at 25 sites, corresponding to the intermediate and lower reaches of medium-sized tributaries and in the main river, in accordance with the ecology of the species. Whether the species was present depended on the physicochemical, habitat and biological conditions of the study sites. Freshwater blenny was very sensitive to organic pollution and eutrophication, the deterioration of substrate composition and channel structure, and the degradation of aquatic and riparian vegetation.
4. Freshwater blenny showed a selective use of microhabitat locations with high current velocity, linked to gravel or cobble substrate. It was also observed that the species is capable of adapting its selection behaviour to the flow-mediated seasonal changes in its physical environment.
5. Although the results presented indicate that the species is not a microhabitat specialist, individual survival is likely to be dependent on the availability of key microhabitats, which must be protected against detrimental human activity.

     

The role of lateral connectivity in the maintenance of macrophyte diversity and production in large rivers

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Hobbyists acting simultaneously as anglers and aquarists: Novel pathways for non-native fish and impacts on native fish

1. Human translocations of non-native aquatic species are a global conservation challenge. Aquarists and anglers are two hobbyist groups whose practices are particularly likely to translocate non-native aquatic species, especially fish.
2. This article aims to stipulate a change of perspective among these hobbyists, who – by acting simultaneously as anglers and aquarists – establish novel pathways for non-native fish.
3. This study showed that: (i) 51 of 226 respondents to a questionnaire act simultaneously as anglers and aquarists; (ii) 53 of 237 non-native fish species in the European Union are used for both angling and aquarium hobbies; and (iii) hobbyists write online reports on the catch and exchange of a particularly invasive fish, the round goby (Neogobius melanostomus).
4. This combination of knowledge on how hobbyists use non-native fish and the ecological impacts of round goby demonstrates how the impact of an invasive species can be influenced by the combined behaviours of anglers and aquarists.
5. We suggest that future research in aquatic conservation should move beyond considering the commercial aquarium trade and angling as separate pathways for translocating non-native fish, and instead consider these hobbyist groups as interconnected.