Cut logs and high stumps of spruce, birch, aspen and oak - nine years of saproxylic fungi succession

Managed stands generally contain little coarse woody debris compared to natural forests. This study addresses the potential of retained cut wood to increase the amount of substrate available for a variety of saproxylic fungi.Fruit bodies of fungi were recorded from 270 cut high stumps and logs of spruce, birch, aspen and oak over nine years of initial succession. A total of 1565 occurrences of 148 species, seven of which were red-listed, were found. Numbers of species were significantly higher on logs than on stumps. Annual diversity peaked four to seven years after logging, sooner on logs than on stumps. Numbers of species were positively related to substrate diameter, but not to the level of shade/sun-exposure, while the presence of some individual species were significantly affected by one or both of these factors. Comparisons with data from the literature indicated no fundamental differences between fungal communities on cut wood and on naturally dead substrates. We conclude that cut wood left on site, especially logs, may mimic dead wood from trees that die swiftly from natural causes and support diverse fungal communities, both in shaded stands and in open logging sites. Substrates generated by slow self-thinning processes in natural forests however, are probably difficult to mimic in managed stands.     

The role of sediment microorganisms in the productivity, conservation, and rehabilitation of mangrove ecosystems: an overview

Mangrove communities are recognized as highly productive ecosystems that provide large quantities of organic matter to adjacent coastal waters in the form of detritus and live animals (fish, shellfish). The detritus serves as a nutrient source and is the base of an extensive food web in which organisms of commercial importance take part. In addition, mangrove ecosystems serve as shelter, feeding, and breeding zones for crustaceans, mollusks, fish of commercial importance, and resident and migratory birds. Although mangroves in the United States are protected, the systematic destruction of these ecosystems elsewhere is increasing. Deforestation of mangrove communities is thought to be one of the major reasons for the decrease in the coastal fisheries of many tropical and subtropical countries. There is evidence to propose a close microbe-nutrient-plant relationship that functions as a mechanism to recycle and conserve nutrients in the mangrove ecosystem. The highly productive and diverse microbial community living in tropical and subtropical mangrove ecosystems continuously transforms nutrients from dead mangrove vegetation into sources of nitrogen, phosphorus, and other nutrients that can be used by the plants. In turn, plant-root exudates serve as a food source for the microorganisms living in the ecosystem with other plant material serving similarly for larger organisms like crabs. This overview summarizes the current state of knowledge of microbial transformations of nutrients in mangrove ecosystems and illustrates the important contributions these microorganisms make to the productivity of the ecosystems. To conserve the mangrove ecosystems, which are essential for the sustainable maintenance of coastal fisheries, maintenance and restoration of the microbial communities should be undertaken. Inoculation of mangrove seedlings with plant-growth-promoting bacteria may help revegetate degraded areas and create reconstructed mangrove ecosystems.     

Relative importance of coarse and fine woody debris for the diversity of wood-inhabiting fungi in temperate broadleaf forests

Dead wood is considered important in forest conservation, but patterns of fungal diversity on dead wood have rarely been quantified. We investigated the relative importance of coarse (diameter >10 cm) and fine woody debris (1-10 cm) for fungi in broadleaf forests in southern Sweden. The numbers of species per unit wood volume and per forest area were significantly higher for fine than for coarse woody debris for both ascomycetes and basidiomycetes. When the number of species was plotted against the number of records, coarse woody debris was more species rich than fine woody debris for a given number of basidiomycete records. Of the ascomycetes, 75% were found exclusively on fine woody debris (the corresponding proportion for basidiomycetes is 30%), 2% were found exclusively on coarse woody debris (basidiomycetes 26%), and 23% of the species were found on both diameter classes (basidiomycetes 44%). We conclude that fine woody debris is important for diversity of wood-inhabiting fungi, especially ascomycetes, in this forest type. However, coarse woody debris must also be provided to insure the occurrence of many species of basidiomycetes.     

Large predators and trophic cascades in terrestrial ecosystems of the western United States

Large predators potentially can help shape the structure and functioning of terrestrial ecosystems, yet strong evidence of top-down herbivore limitation has not been widely reported in the scientific literature. Herein we synthesize outcomes of recent tri-trophic cascades studies involving the presence and absence of large predators for five national parks in the western United States, including Olympic, Yosemite, Yellowstone, Zion, and Wind Cave. Historical observations by park biologists regarding woody browse species and recently compiled age structure data for deciduous trees indicate major impacts to woody plant communities by ungulates following the extirpation or displacement of large predators. Declines in long-term tree recruitment indexed additional effects to plant communities and ecological processes, as well as shifts towards alternative ecosystem states. The magnitude and consistency of vegetation impacts found within these five parks, in conjunction with other recent North American studies, indicate that broad changes to ecosystem processes and the lower trophic level may have occurred in other parts of the western United States where large predators have been extirpated or displaced. Thus, where ungulates have significantly altered native plant communities in the absence of large predators, restoration of native flora is urgently needed to recover former ecosystem services. Following the reintroduction of previously extirpated gray wolves Canis lupus into Yellowstone National Park, a spatially patchy recovery of woody browse species (e.g., aspen Populus tremuloides, willow Salix spp., cottonwood Populus spp.) has begun, indicating that large predator recovery may represent an important restoration strategy for ecosystems degraded by wild ungulates.     

Fungal growth on a common wood substrate across a tropical elevation gradient: Temperature sensitivity, community composition, and potential for above-ground decomposition

Fungal breakdown of plant material rich in lignin and cellulose (i.e. lignocellulose) is of central importance to terrestrial carbon (C) cycling due to the abundance of lignocellulose above and below-ground. Fungal growth on lignocellulose is particularly influential in tropical forests, as woody debris and plant litter contain between 50% and 75% lignocellulose by weight, and can account for 20% of the C stored in these ecosystems. In this study, we evaluated factors affecting fungal growth on a common wood substrate along a wet tropical elevation gradient in the Peruvian Andes. We had three objectives: 1) to determine the temperature sensitivity of fungal growth - i.e. Q₁₀, the factor by which fungal biomass increases given a 10 °C temperature increase; 2) to assess the potential for above-ground fungal colonization and growth on lignocellulose in a wet tropical forest; and 3) to characterize the community composition of fungal wood decomposers across the elevation gradient. We found that fungal growth had a Q₁₀ of 3.93 (95% CI of 2.76-5.61), indicating that fungal biomass accumulation on the wood substrate nearly quadrupled with a 10 °C increase in temperature. The Q₁₀ for fungal growth on wood at our site is higher than Q₁₀ values reported for litter decomposition in other tropical forests. Moreover, we found that above-ground fungal growth on the wood substrate ranged between 37% and 50% of that measured in the soil, suggesting above-ground breakdown of lignocellulose represents an unexplored component of the C cycle in wet tropical forests. Fungal community composition also changed significantly along the elevation gradient, and Ascomycota were the dominant wood decomposers at all elevations. Fungal richness did not change significantly with elevation, directly contrasting with diversity patterns observed for plant and animal taxa across this gradient. Significant variation in fungal community composition across the gradient suggests that the characteristics of fungal decomposer communities are, directly or indirectly, influenced by temperature.     

Linking species richness, biodiversity and ecosystem function in soil systems

Soils are the central organizing entities in terrestrial ecosystems and possess extremely diverse prokaryotic and eukaryotic biota. They are physically and chemically complex, with micro- and macro-aggregates embedded within a solid, liquid and gaseous matrix that is continually changing in response to natural and human-induced perturbations. Recent advances in molecular techniques in systematics have provided opportunities for the study of biodiversity and biocomplexity of soil biota. A symposium and workshop on soil biogeochemistry and biodiversity International Symposium on Impacts of Soil Biodiversity on Biogeochemical Processes in Ecosystems, Taiwan Forestry Research Institute, Taipei, Taiwan April 18-24, 2004. Convened an international array of participants working in biomes on virtually every continent on the planet (ranging from polar to tropical regions). This special issue reports on the theoretical bases and applications of molecular methods for the measurement of soil biodiversity.

Themes addressed include a melding of classical taxonomic investigations with biochemical fingerprinting and molecular probing of organism identities. Several papers highlight new advances in identifications of prokaryotic and eukaryotic organisms. Examples include new developments in “fingerprinting” of microbes active in “mycorrhizospheres” using immunocapture and other innovative techniques. Developments in the study of impacts of invasive plant and animal species on ecosystem function and subsequent microbial community composition and function have been very great in the last 2-3 years. Soils are major repositories of legacies, including fine and coarse woody debris and other organic products, which have feedbacks on soil diversity. The ways in which species diversity and function of microbial and faunal communities interact and their importance to ecosystem function are examined in biological and biochemical detail. This paper provides an overview of soil biodiversity and its feedbacks on soil biogeochemical processes in ecosystems.     

The importance of understanding spatial population structure when evaluating the effects of silviculture on spotted salamanders (Ambystoma maculatum)

Current silvicultural practices in the northeastern United States create diverse vegetation patterns and microclimates that provide a mosaic of terrestrial habitats for amphibian species. We inferred patterns of habitat use by the spotted salamander, Ambystoma maculatum, by studying colonization of four newly created breeding pools each surrounded by four different forest treatments: a control, partial cut, clearcut with coarse woody debris (CWD) removed, and clearcut with CWD retained. Created pools were rapidly colonized, indicating that breeding salamanders readily bred in new pools they encountered. This suggests that in our study area pool-specific philopatry and site fidelity may not be high and that particular pools may not define local breeding populations. In the experimental silvicultural treatments, juvenile salamanders preferred the control forest to the clearcuts, whereas adult salamanders showed no significant preferences among the treatments. Although silvicultural practices such as clearcutting may reduce juvenile movement between pools, inter-pool movement by adults that are more tolerant of habitat change may ameliorate this effect in our study area. If juveniles are the primary life-history stage dispersing between local populations (i.e., moving between more isolated groups of pools), however, there is potential for clearcutting to reduce the connectivity between local populations.     

Impacts of coffee agroforestry management on tropical bee communities

Though it is undoubted that tropical bees are influenced by habitat composition, few studies have investigated the relative importance of both local and landscape-level habitat parameters in supporting large and diverse bee communities. The conservation of native bee communities within agroforestry landscapes is particularly urgent given the importance of pollination services within these systems. In this study, we examined tropical bee communities within a largely deforested shade coffee-growing region in Chiapas, Mexico. We used regression tree modeling to examine the response of bee functional groups to local and landscape-level habitat management. Our models revealed that the most predictive factors for bee abundance and species richness were the number of tree species, the number of tree species in flower, and the canopy cover of the local agroforestry landscape. Solitary bees were most abundant in habitats with high canopy cover, while social bees were most abundant in habitats with greater tree species richness. Cavity-nesting and wood-nesting bee abundance was positively affected by the amount of canopy cover in the farm, while ground-nesting bees were most abundant in habitats with a large number of tree species in flower. Our results demonstrate that across bee sociality groups, nesting guilds, and tribes, the most critical factor impacting native bee communities was within-farm local vegetation management. These results reveal the important role that agroforestry managers can have on biodiversity conservation, and the potential contribution they can make by creating resource-rich agricultural matrices. Specifically, our findings highlight the importance of diverse overstory tree management in supporting native bee communities within tropical agroforestry systems.     

Consistent effects of eastern subterranean termites (Reticulitermes flavipes) on properties of a temperate forest soil

Termites inhabit a large portion of land covered by temperate forests. Climate warming and urbanization will likely extend their range and increase their densities in these ecosystems but, compared to their tropical counterparts, little is known about their effects on soil properties and processes. If temperate termites have the strong ecosystem engineering effects of tropical termites, then knowledge of their ecology and impacts will be vital for predicting how temperate systems respond to environmental change. We investigated how feeding and tunneling by the eastern subterranean termite, Reticulitermes flavipes, affected wood decomposition and soil properties under decaying wood. Twelve laboratory microcosms filled with mineral soil and with wood blocks of four common temperate tree species, received R. flavipes soldiers and workers at field densities, with an additional five termite-free microcosms serving as controls. After 25 weeks, the effects of termites on wood mass loss, and on carbon and nitrogen dynamics, differed across tree species, yet their effects on soil properties were consistent regardless of wood type. Microbially-available carbon in soil was 20% higher with termites and soil moisture content 20% lower. Soil pH was more acid with termites and their effects on soil microbial biomass were positive but non-significant. These soil responses were consistent regardless of the wood species, suggesting that termite effects on soil are dictated largely by their activity within the soil matrix and not by their feeding rate on specific wood substrates. These results are among the first to quantify the effects of temperate forest termite activity on soil properties, demonstrating the potential for these termites to shape biogeochemical cycling and plant communities through their alteration of the soil environment.     

The effects of windthrow on forest insect communities: a literature review

This paper reviews the effects that windstorm-induced drastic changes (micro-climate, soil, vegetation, and ground structural heterogeneity) have on forest insect communities. In the current context of shady and CWD-deprived managed forests, windthrow gaps act as regional biodiversity hotspots by maintaining habitat continuity in a mosaic landscape, and by facilitating the breeding and population growth of clearing specialists and saproxylic species. Windthrow gaps are dead-wood islands where forest protection and habitat conservation goals may stand against each other. Besides the quantitative effect of dead wood on bark beetle outbreaks and saproxylic diversity, the latter is favoured by key dead-wood micro-habitats such as large logs, snags and sun-exposed coarse woody debris. The role of natural enemies and sanitation operations in regulating pest outbreaks is discussed. Heterogeneous openings provide many micro-habitats favouring flower-visiting insects, phytophages on saplings, on fallen tree crowns, and on diverse understory flora, as well as ground insects on specific micro-sites.     

Impacts of fishing by dewatering on fish assemblages of tropical floodplain wetlands: A matter of frequency and context

Tropical floodplain wetlands and the fish communities they support are subject to great pressure from human demands for water and aquatic living resources. In densely populated agricultural areas where such pressures are greatest, floodplain wetlands may be dewatered for the dual purpose of crop irrigation and fish harvesting. Viewed as highly destructive to fish communities, the practice is widely discouraged but remains common. We investigated the impacts of dewatering on fish abundance and assemblage structure in permanent floodplain wetlands of the lower Mekong region. Draining was carried out only in wetlands where access for fishing and water withdrawal was exclusive to individual households or groups, and where fishing was restricted to draining events. Subsequently, the impacts of draining were found to be equivalent to those of intensive fishing, rather than entirely catastrophic. Many wetlands were drained and fished repeatedly in a single dry season, with catches declining by 72% on average between consecutive events. Species richness and mean length of fish also declined with consecutive dewatering events. Fish biomass was higher in drained wetlands prior to the first and second draining events than in open access, non-drained wetlands. These surprising results suggest that draining of floodplain wetlands is not as fundamentally destructive to fish populations as is often assumed. Where fishing pressure under open access conditions is high, allocation of exclusive rights to fish and dewater wetlands can aid fish conservation as long as dewatering is carried out only once.     

Landscape change and the science of biodiversity conservation in tropical forests: A view from the temperate world

Using a largely temperate forest perspective, this article briefly reviews four often inter-related types of landscape change which can have significant impacts on tropical and temperate forest biodiversity: logging, fire, forest clearing, and plantation expansion. There are many important similarities but also key differences in the kinds of work conducted on these four kinds of landscape change in tropical and temperate forests. For example, direct studies of the effects of forest conversion on biodiversity are relatively rare in both tropical and temperate ecosystems. Temperate forest research differs from tropical research in terms of relative amount of single species work, long-term studies, and research at scales spanning multiple landscapes. There are key areas for cross-fertilization of research in tropical and temperate forest biomes. These include: (1) the ability of species to persist in post-disturbed forest landscapes, including those perturbed by past clearing, logging or wildfire, (2) the impacts of plantation establishment on biodiversity, (3) the effectiveness of altered silvicultural systems on forest structure, vegetation composition, and biota, and (4) inter-relationships between forest logging and fire-proneness. Cross-learning about the impacts of drivers of landscape change between tropical and temperate forests is fundamental for speeding the progress of conservation efforts in both broad kinds of environments. However, some opportunities for cross-learning have not been taken because temperate and tropical forest research has often sometimes been isolated from one another. Some approaches to tackle this problem are briefly outlined.     

Simulating anthropogenic impacts to bird communities in tropical rain forests

We used an aggregated modelling approach to simulate the impacts of anthropogenic disturbances on the long-term dynamics of faunal diversity in tropical rain forests. We restricted our study to bird communities even though the approach is more general. We developed a model called BioDiv which simulated the establishment of hypothetical bird species in a forest. Our model was based on the results of a simple matrix model which calculated the spatio-temporal dynamics of a tropical rain forest in Malaysia. We analysed the establishment of bird species in a secondary forest succession and the impacts of 60 different logging scenarios on the diversity of the bird community. Of the three logging parameters (cycle length, method, intensity), logging intensity had the most servere impact on the bird community. In the worst case the number of bird species was reduced to 23% of the species richness found in a primary forest.     

Effects of Silviculture Using Best Management Practices on Stream Macroinvertebrate Communities in Three Ecoregions of Arkansas, USA

We examined aquatic macroinvertebrate assemblages in six Arkansas low-order streams across three ecoregions. Samples were taken at locations above and below silviculture sites using Best Management Practices (BMPs) and were compared in winter and spring for 1 year prior to logging and 2 years after treatments. Implementation at all sites scored between 89 and 100% in compliance assessments using state BMP guidelines. Deficiencies were generally limited to engineering controls designed to prevent soil erosion; however, no clear evidence of sedimentation was observed in any of the study streams. Water quality variables were similar between sites upstream and downstream of the harvests in all survey periods. Analysis of variance did not indicate reduced taxonomic richness that could clearly be attributed to silviculture operations, but did reveal several significant differences in relative abundance variables that could be associated with negative impacts, primarily at a single site. Euclidean distance indicated that macroinvertebrate assemblage similarity between reference and treatment stations decreased after treatments at two additional study sites. At most sites, however, there was not an assemblage shift from organisms using coarse particulate organic matter as the primary food source to those using fine particulate organic matter downstream of the harvests. Our results indicated that BMPs were moderately to strongly effective in protecting water quality and biological integrity in five of the six study streams.     

Agricultural drainage ditches, their biological importance and functioning

We reviewed studies on the biological state of agricultural drainage ditches in the temperate and boreal zones of the Northern Hemisphere. We looked at the relative importance of ditches for farmland biota as compared to that of other habitats, and assessed the degree to which biological communities of ditches contribute to the provisioning of ecosystem services. We evaluated impacts pertaining to replacement of open drains by subsurface drainage, removal of main ditches, rehabilitation of old drainage systems, and maintenance of ditches. Most ditches support species also common elsewhere. Whenever comprehensive surveys were conducted, ditches were shown to provide valuable wet vegetated non-cropped habitats to both aquatic and terrestrial taxa, supply food resources lacking in otherwise dry and intensively managed cropland, and perform connectivity functions within a wider landscape. Regionally ditches were shown to harbour rare species or species not found presently in other farmland habitats. Some functions of drainage ditches, such as regulating water flow and nutrient retention, are likely to depend on the composition and structure of biological communities of ditches, though the issue remains poorly explored. The biggest threat to the quality of ditch networks as ecosystems is presented by a severe runoff from the fields, management in disregard of a habitat value of ditches, and removal of ditches.     

Collembolan community organization and its temporal predictability

Long-term investigations on Collembola in Russian forests revealed that both stable and fluctuating communities can exist in natural ecosystems. Stable collembolan communities are characteristic of mesic moisture conditions, whilst fluctuating communities are typical of either xeric or hygric habitats. Stable communities are determined by between-year constancy in species and ecological structures, though other characteristics (for instance, total collembolan abundance or number of species) can vary. Stability of collembolan communities is externally stimulated by the constancy of environmental conditions or by their cyclic changing. Stable collembolan communities are best suited for the bioindication of long-term anthropogenic impacts on natural ecosystems, whereas fluctuating communities better reflect short-term environmental changes. A temporal predictability is possible only for stable communities.     

Temporal dynamics of iron-rich, tropical soil organic carbon pools after land-use change from forest to sugarcane

Background, aim, and scope  

Land-use change can significantly influence carbon (C) storage and fluxes in terrestrial ecosystems. Soil–plant systems can act as sinks or sources of atmospheric CO₂ depending on formation and decomposition rates of soil organic matter. Therefore, changes in tropical soil C pools could have significant impacts on the global C cycle. This study aims to evaluate the impacts of long-term sugarcane cultivation on soil aggregation and organic matter, and to quantify temporal dynamics of soil organic matter in cultivated sugarcane plantation soils previously under a tropical natural secondary forest.     

Effects of anthropogenic silt on aquatic macroinvertebrates and abiotic variables in streams in the Brazilian Amazon

Purpose  

While environmental risks associated with petroleum extraction such as oil spills or leaks are relatively well known, little attention has been given to the impacts of silt. The increase in petroleum exploitation in Amazonia has resulted in sediment input to aquatic systems, with impacts on their biodiversity. Here we use a combination of field measurements and statistical analyses to evaluate the impacts of anthropogenic silt derived from the construction of roads, borrow pits, and wells during the terrestrial development of gas and oil, on macroinvertebrate communities in streams of the Urucu Petroleum Province in the Central Brazilian Amazon.     

Impacts of selective logging on canopy and ground assemblages of tropical forest butterflies: Implications for sampling

Commercial selective logging is a major cause of habitat disturbance in Southeast Asian rainforests, yet despite much research there is little consensus on impacts of disturbance on biodiversity. There is also little consensus on the most appropriate methods for sampling tropical species, making it difficult to draw general conclusions from published studies. For example, many studies have used butterflies to assess impacts of selective logging but sampling has usually been conducted at ground level and the canopy fauna has often been ignored. In this study, we investigate the importance of sampling in the canopy by using fruit-baited traps to investigate impacts of selective logging on Nymphalid butterflies in primary forest and forest selectively logged 15 years previously in Sabah (Malaysian Borneo). Analysing combined data from canopy (≈25 m above ground level) and ground-level traps showed significantly lower diversity in selectively logged forest. However, this difference was not observed when data from only ground traps were analysed. Primary forest supported a butterfly assemblage comprising species with more restricted geographical ranges, and thus higher conservation value, compared with selectively logged forest. This result was observed regardless of whether or not canopy data were included in this analysis. We conclude that sampling in the canopy is critical when producing species inventories, but of little importance when determining the impacts of selective logging on restricted-range species.     

自然水体中超声波标记鱼游动轨迹精密确定算法

针对鱼类关键生境位置确定的应用需求,该文提出了一套适用于自然水体的超声波标记鱼定位算法,解决了标记鱼定位以及存在粗差观测值,即水听器记录的超声波信号接收时间存在错误情况下算法的抗干扰性。宜昌黄柏河的实测结果表明,基于现有1 ms级精度的水听器,可在自然水体中获得2.15 m精度的信号标记鱼三维游动轨迹。如因气泡、遮挡等因素对水听器观测数据引入粗差,当粗差量级在10 m以上,该方法可接近100%探测出是否存在粗差。当粗差观测值在3个以内时,该方法的探测成功率可达84.3%以上,3个以上时粗差探测成功率明显下降,5个及以上,即粗差观测值个数占观测值总数的比例大于31.25%时,基本只能探测出观测数据中存在粗差而无法有效确定粗差。该研究可为渔业增殖、鱼类栖息地保护、鱼类洄游通道等研究提供参考。