Deforesting the riverscape: the effects of wood on fish diversity in a Venezuelan piedmont stream

While deforestation of tropical ecosystems has been shown to have significant impacts on terrestrial habitats, its effects on aquatic habitats are poorly studied. Deforestation dramatically reduces the input of woody debris to streams, and given the importance of large woody debris to fish communities in temperate streams, this might be one mechanism by which logging could affect aquatic ecosystems in the tropics. To examine the effects of large woody debris on the diverse fish assemblage of a tropical stream, we surveyed pools with and without wood at Rio Las Marias, Venezuela. Pools containing wood contained greater numbers of individuals and more species of fish than pools without wood, and the two types of pools differed in their composition. To test whether these results were due to the presence of woody debris, we conducted an experimental wood addition. Pools to which wood was added showed marked increases in both fish abundance and species richness relative to wood-free pools, and the composition of the fish assemblage in experimental pools approached that of pools with naturally occurring woody debris. These results demonstrate that large woody debris plays a major role in structuring fish communities in tropical streams. As a consequence, logging practices that reduce the input of woody debris to tropical streams or directly remove wood from streams could have serious impacts on aquatic habitats, affecting both the diverse fish communities and local economies dependent on stream fisheries.     

Habitat suitability models of saproxylic red-listed boreal forest species in long-term matrix management: Cost-effective measures for multi-species conservation

Understanding of how a large landscape or network of conservation areas and habitats of red-listed species change in time is an important topic when addressing the temporal interplay between protected areas and matrix. We developed models of habitat suitability indices (HSI) for saproxylic red-listed invertebrate and fungal species, accounting for roughly 70% of all red-listed boreal forest species of the study area in eastern Finland. By using a forestry planning program that incorporates various optimisation methods we analysed trade-offs between timber production and amount of habitats of saproxylic red-listed species within a 60-year period. We also produced production possibility frontiers that show how to increase quality of the matrix with least costs. Moreover, we analysed how habitat suitability criteria used in optimisations affect the area of different habitat quality classes.

Our analysis shows that by adopting HSI models in long-term matrix management, it is possible to increase habitats for several red-listed species without substantial losses in timber production. The increase in habitat area is achieved mainly by decreasing the area that is thinned compared to intensive timber production plan. In the long term, this seems to be a novel cost-effective method to increase the quality of the matrix for red-listed saproxylic species. However, the selected optimisation method and the criteria or specification of the management objective for red-listed forest species have a strong effect on results when HSI models are used in conservation planning. Therefore any practical application must be performed with great care.     

The effects of forest fragmentation on euglossine bee communities (Hymenoptera: Apidae: Euglossini)

Despite scientific and media attention on pollinator declines, there is still only a rudimentary understanding of the response of bees—the most important group of pollinators worldwide—to ongoing land use changes. Euglossine bees are an ecologically important Neotropical clade of forest-dependent pollinators. Despite the fact that euglossines are well studied relative to other groups of tropical bees, only three previous studies, all from Brazil, address the response of euglossines to forest fragmentation. In this study, I tripled the maximum sample size of previous efforts by sampling male euglossines in 22 forest fragments ranging in area from 0.25 ha to 230 ha in southern Costa Rica, using chemically baited Van Someren traps. Abundance of euglossine bees was significantly positively related to forest fragment size, negatively related to shape (edge:area ratio), and marginally related to fragment isolation. Euglossine species richness showed similar, but weaker trends: richness was significantly positively related to the quantity of forest edge, marginally negatively related to fragment area, and not related to fragment isolation. The positive relationship between euglossine richness and abundance and forest fragment edge is consistent with other studies that have found high euglossine density in secondary or disturbed forest. The data suggest that individual euglossines move between forest fragments, as has been shown in other systems. Still, forest fragmentation appears to affect euglossine bees more strongly than other bee groups in the study region. Their large flight range and positive relationship with forest edges may help to buffer the negative effects of fragmentation, allowing euglossines to utilize even the very smallest forest fragments in the study area.     

Linking forest history and conservation efforts: Long-term impact of low-intensity timber harvest on forest structure and wood-inhabiting fungi in northern Sweden

Throughout the northern hemisphere old forests with high abundance of dead wood are rare features in most landscapes today, and the loss of dead wood constitutes a serious threat to the existence of many species. This study, using field surveys and dendrochronology, examines the relationship between wood-inhabiting fungi and past forest utilisation along a gradient of early logging activity. Data were collected in three late-successional Scots pine forests in northern Sweden. Nonmetric Multidimensional Scaling (NMS) was then used to assess differences in species composition among the forests. Our results show that minor forest logging (22-26 cut stumps ha⁻¹) carried out a century ago may have continuing effects on forest characteristics, including dead wood dynamics and the wood-inhabiting fungal community - especially the abundance of red-listed species. The most important effects are lower numbers of logs in early and intermediate stages of decomposition. Additionally, numbers of species (including red-listed species) can be high in forests that have been subject to low levels of logging. Overall, the high species numbers recorded in this study (n = 60-87) show that old, low-productivity pine forests harbour a considerable fraction of the total diversity of Basidiomycetes in northern Fennoscandian boreal forests. We conclude that the formation of a framework linking forest history and environmental data is vital for understanding the ecology and formulating goals for future management of these forests.     

The effects of a forest fire on soil microfungi

The effects of forest fires on the soil mycotlora were investigated in a Pinus contorta forest in Alberta, where it was found that species of Trichoderma and Penicillium were reduced in the burned plot, whereas Gelasinospora sp occurred only in the burned plot: Cylindrocarpon destructans appeared not to be affected by fire.The response of fungi to aqueous extracts of burned and unburned litter, measured as linear growth on agar, showed that, of the isolates tested, all but C. destructans were inhibited by the burned litter extract; C. destructans grew better on the burned litter extract. An examination of spore germination rates and growth in liquid culture showed that Trichoderma polysporum and Penicillium janthinellum were both inhibited by burned litter extracts whereas C. destructans was not. Gelasinospora sp did not grow in liquid culture, nor did it produce spores after being kept in culture for some time.It was concluded that species of Trichoderma and Penicillium were killed by the heat of the fire, and subsequently unable to rccolonize the upper layers of the soil, due to an inhibition of spore germination and growth by the chemical products of burning. C. destructans on the other hand may have been able to recolonize quickly as it appeared to be stimulated in its linear growth rate by the chemical products of burning, and its spore germination rate was only marginally lowered. The occurrence of Gelasinospora sp following fire is possibly explained by its extremely rapid growth rate, and the possibility of its ascospores being more able to withstand high temperatures in the soil.In the light of recent reports, indicating that some species of Trichoderma and Penicillium are actively antagonistic to other fungi, it is suggested that their absence after fire, in the area studied, may permit a high inoculum of C. destructans to develop in the soil, which could possibly result in a high incidence of disease in developing pine seedlings     

Conserving ground-dwelling beetles in an endangered woodland community: Multi-scale habitat effects on assemblage diversity

Patterns of biodiversity are influenced by habitat features at multiple spatial scales, yet few studies have used a multi-scale approach to examine ground-dwelling beetle diversity patterns. We trapped and quantified ground-dwelling beetle assemblages at two spatial scales: (1) microhabitat elements, represented by open ground, ground under trees and ground next to logs and (2) macrohabitat, represented by three vegetation types in a box-gum grassy woodland in south-eastern Australia. Species richness and evenness was highest at samples from under trees and lowest at samples in the open. At the macrohabitat scale, species richness and evenness did not differ among vegetation types. Assemblage composition was significantly different between trees, logs and open elements. Assemblage composition was different only between vegetation types with contrasting high and low shrub cover. Estimation of true species richness indicated assemblages at logs may have a higher number of species compared to trees and open elements, and implied greater spatial heterogeneity in assemblages at logs. Significant spatial autocorrelation in beetle assemblages was detected for logs at up to 400 m, but not for ground under trees or in the open. In agreement with previous studies, a mix of vegetation types at the macrohabitat scale is important for beetle conservation. Assemblage composition, however, appears to be more closely linked with habitat elements at the microhabitat scale, where logs support a high diversity of beetle species. This strongly supports the idea that restoring logs to box-gum grassy woodlands would be useful for increasing beetle species richness and assemblage heterogeneity.     

The role of ectomycorrhizal communities in forest ecosystem processes: New perspectives and emerging concepts

The fungal symbionts forming ectomycorrhizas, as well as their associated bacteria, benefit forest trees in a number of ways although the most important is enhancing soil nutrient mobilization and uptake. This is reciprocated by the allocation of carbohydrates by the tree to the fungus through the root interface, making the relationship a mutualistic association. Many field observations suggest that ectomycorrhizal fungi contribute to a number of key ecosystem functions such as carbon cycling, nutrient mobilization from soil organic matter, nutrient mobilization from soil minerals, and linking trees through common mycorrhizal networks. Until now, it has been very difficult to study trees and their fungal associates in forest ecosystems and most of the work on ECM functioning has been done in laboratory or nursery conditions. In this review with discuss the possibility of working at another scale, in forest settings. Numerous new techniques are emerging that makes possible the in situ study of the functional diversity of ectomycorrhizal communities. This approach should help to integrate developing research on the functional ecology of ectomycorrhizas and their associated bacteria with the potential implications of such research for managing the effects of climate change on forests.     

The effects of organic carbon on acid rain in a temperate forest in Japan

From recent studies, we noticed that stemflow had an acidity that differed from that of precipitation or throughfall. Organic substances, supplied from the tree surface, would be one of the factors that modifies the acidity of rain. The objectives of this study were to determine the DOC concentration and to clarify the influence of dissolved organic carbon (DOC) on acidity in precipitation, throughfall and stemflow. Throughfall and stemflow were measured in sugi [Cryptomeria japonica D. Don], hinoki [Chamaecyparis obutusa Endl.] and kojii [Castanopsis cuspidata (Thumb.) Schottky.] stands. All samples were analyzed for their pH, electric conductivity (EC), major inorganic anions and cations and DOC concentration.The annual average of DOC was highest in stemflow, and that of throughfall and precipitation were one-third and one-tenth of stemflow, respectively. The averages of DOC in stemflow in two coniferous, sugi and hinoki stands, were higher than that of broadleaved kojii stand. DOC concentration was low in summer and high in winter in all stands. In Stemflow, pH and DOC were negatively correlated, while EC and DOC in stemflow were positively correlated in all stands. However in throughfall, there was no evident relationship between pH, DOC and EC. This relationship was not explained by the cause of organic acid.     

The effects of the insecticide chlorpyrifos on spider and Collembola communities

The effects of chlorpyrifos on aquatic systems are well documented. However, the consequences of the pesticide on soil food webs are poorly understood. In this field study, we hypothesised that the addition of a soil insecticide to an area of upland grassland would impact spider and Collembola communities by decreasing numbers of spiders, consequently, causing an increase in detritivore numbers and diversity.Chlorpyrifos was added to plots on an upland grassland in a randomised block design. Populations of Collembola and spiders were sampled by means of pitfall traps (activity density) and identified to species.Twelve species of Collembola were identified from the insecticide-treated and control plots. Species diversity, richness and evenness were all reduced in the chlorpyrifos plots, although the total number of Collembola increased ten-fold despite the abundance of some spider species being reduced. The dominant collembolan in the insecticide-treated plots was Ceratophysella denticulata, accounting for over 95% of the population.Forty-three species of spider were identified. There were a reduced number of spiders in insecticide-treated plots due mainly to a lower number of the linyphiid, Tiso vagans. However, there was no significant difference in spider diversity between the control and insecticide treatments.We discuss possible explanations for the increase in abundance of one collembolan species in response to chlorpyrifos and the consequences of this. The study emphasises the importance of understanding the effects of soil management practices on soil biodiversity, which is under increasing pressure from land development and food production. It also highlights the need for identification of soil invertebrates to an ‘appropriate’ taxonomic level for biodiversity estimates.     

The impacts of forest clearance on lizard, small mammal and bird communities in the arid spiny forest, southern Madagascar

Madagascar is a global biodiversity hotspot threatened by forest loss, degradation and fragmentation, all of which are detrimental to the future survival of forest-dwelling organisms. For conservation purposes it is essential to determine how species respond to habitat disturbance, specifically deforestation. In this study we investigated the impacts of deforestation on three vertebrate communities, lizards, small mammals and birds, in an area of spiny forest subjected to anthropogenic forest clearance. Spiny forest has high levels of endemism, but conservation in this unique ecosystem is hindered by the lack of research. We undertook standardised trapping, time-constrained and timed species searches to assess species richness, species abundance and community composition of lizards, small mammals and birds in six areas of ‘forest’ and six ‘cleared’ areas. From surveys and opportunistic sightings we recorded a total of 70 species of birds, 14 species of mammals and 38 species of reptiles and amphibians. We found forest clearing to have a negative effect on species richness and community structure of all groups and identified loss of canopy cover as a driving factor behind this. However, the response and sensitivity to clearing varied between groups and species. Lizards (50%) and small mammals (40%) had the greatest decline in species richness in response to clearing as compared to birds (26%), although birds showed the greatest shift in community structure. The community in cleared areas contained more generalist and introduced species that have wider geographic ranges and habitat preferences, than those unique to the spiny forest. We found the first suite of species to suffer from forest clearance were those of high conservation priority due to their restricted geographic range. Our findings are discussed in relation to future spiny forest conservation and management.     

Effects of biochar application in forest ecosystems on soil properties and greenhouse gas emissions: a review

Purpose

Forests play a critical role in terrestrial ecosystem carbon cycling and the mitigation of global climate change. Intensive forest management and global climate change have had negative impacts on the quality of forest soils via soil acidification, reduction of soil organic carbon content, deterioration of soil biological properties, and reduction of soil biodiversity. The role of biochar in improving soil properties and the mitigation of greenhouse gas (GHG) emissions has been extensively documented in agricultural soils, while the effect of biochar application on forest soils remains poorly understood. Here, we review and summarize the available literature on the effects of biochar on soil properties and GHG emissions in forest soils.

Materials and methods

This review focuses on (1) the effect of biochar application on soil physical, chemical, and microbial properties in forest ecosystems; (2) the effect of biochar application on soil GHG emissions in forest ecosystems; and (3) knowledge gaps concerning the effect of biochar application on biogeochemical and ecological processes in forest soils.

Results and discussion

Biochar application to forests generally increases soil porosity, soil moisture retention, and aggregate stability while reducing soil bulk density. In addition, it typically enhances soil chemical properties including pH, organic carbon stock, cation exchange capacity, and the concentration of available phosphorous and potassium. Further, biochar application alters microbial community structure in forest soils, while the increase of soil microbial biomass is only a short-term effect of biochar application. Biochar effects on GHG emissions have been shown to be variable as reflected in significantly decreasing soil N₂O emissions, increasing soil CH₄ uptake, and complex (negative, positive, or negligible) changes of soil CO₂ emissions. Moreover, all of the aforementioned effects are biochar-, soil-, and plant-specific.

Conclusions

The application of biochars to forest soils generally results in the improvement of soil physical, chemical, and microbial properties while also mitigating soil GHG emissions. Therefore, we propose that the application of biochar in forest soils has considerable advantages, and this is especially true for plantation soils with low fertility.

     

The relative effects of road traffic and forest cover on anuran populations

Road traffic and the loss of forests are both known to have negative effects on anurans. However, the relative importance of these two predictors is poorly understood because forest cover in the landscape is usually negatively correlated with the density of roads and traffic. To evaluate the independent effects of traffic and forest cover, we selected 36 ponds near Ottawa, Canada, at the center of four landscape types: low forest/low traffic; low forest/high traffic; high forest/low traffic; and high forest/high traffic, where traffic and forest cover were measured within 100-2000 m of the edge of each pond. We surveyed all ponds in 2005 and re-surveyed a 23-pond subset in 2006. The negative association between species richness and traffic density was stronger (partial R² = 0.34; P < .001) than the positive association of species richness with forest cover (partial R² = 0.10; P > .05) in the landscape. Three of six common species showed stronger associations with traffic density than with forest cover - Bufo americanus, Rana pipiens, and Hyla versicolor; two species - Pseudacris crucifer and Rana sylvatica - showed stronger associations with forest cover than with traffic; while Rana clamitans showed similar associations with traffic and forest cover. Our results show that the overall negative effect of traffic on anuran populations in northeastern North America is at least as great as the negative effect of deforestation, and also that the relative effects of these two predictors on anuran abundance vary between species.     

The effects of land uses on soil erosion in Spain: A review

Soil erosion is a key factor in Mediterranean environments, and is not only closely related to geoecological factors (lithology, topography, and climatology) but also to land-use and plant cover changes. The long history of human activity in Spain explains the development of erosion landscapes and sedimentary structures (recent alluvial plains, alluvial fans, deltas and flat valleys infilled of sediment). For example, the expansion of cereal agriculture and transhumant livestock between the 16th and 19th centuries resulted in episodes of extensive soil erosion. During the 20th century farmland abandonment prevailed in mountain areas, resulting in a reduction of soil erosion due to vegetation recolonization whereas sheet-wash erosion, piping and gullying affected abandoned fields in semi-arid environments. The EU Agrarian Policy and the strengthening of national and international markets encouraged the expansion of almond and olive orchards into marginal lands, including steep, stony hill slopes. Vineyards also expanded to steep slopes, sometimes on new unstable bench terraces, thus leading to increased soil erosion particularly during intense rainstorms. The expansion of irrigated areas, partially on salty and poorly structured soils, resulted in piping development and salinization of effluents and the fluvial network. The trend towards larger fields and farms in both dry farming and irrigated systems has resulted in a relaxation of soil conservation practices.     

The effects of extreme forest fragmentation on the bird community of Singapore Island

Singapore Island suffered one of the highest known deforestation rates in the tropics from the mid-to-late 19th century when over 95% of its native lowland forest was cleared. We compared the current bird community structure and composition among three habitat types, i.e., old (>50 years, 7-935 ha) and young (?50 years, 29-49 ha) naturally regenerating secondary forests and abandoned wooded plantations (27-102 ha) dominated by exotic species. Forest patch area had the strongest influence on the current species richness. The overall bird richness was not greater in most mature forest patches, but 20 species were only found in the old secondary forests and five of these were found in <50% of these patches. The rapid decrease in the number of forest species in plantations was offset by an increase in the number of open habitat species. Comparisons with current bird communities in nearby mainland forest sites (Peninsular Malaysia) suggest that the forest avifauna of Singapore is depauperate. The preservation of larger mature and maturing forests is therefore required for conserving the extant forest avifauna in Singapore. Connecting isolated patches can also be envisioned to facilitate movements of forest birds that have low densities and restricted distribution.     

Sampling variation in genetic resources of seed crops: a review

Summary The first explorations for the collection of genetic resources of crop plants took place in areas designated as centers of origin. Later, important characters were found to be present in areas other than those indicated by Vavilov. Hence collection missions were extended to cover other areas in addition to the centers of diversity with different ecogeography and agromorphological features. Collecting activities were aimed not only at providing germplasm for immediate use in breeding but also at conserving genetic variation for future contingencies. The analysis of the collected material has revealed the complex nature, amount and distribution of genetic variation present in natural populations as well as in landraces, old varieties and primitive forms. The study of variation for characters from different regions indicated that it is possible to select certain characters for detecting variability in the populations and establishing the minimum number of genotypes to be sampled. A minimum number of 20–130 plants per sample, depending on the crop, is recommended in order to capture 95% of the total variation in the field. However, it has been emphasized that the number of different populations sampled rather than the sample size per population determines the overall efficiency of a collection. The findings reported allow better utilization of the collected material and formulation of optimal and cost-effective sampling strategies for the future.     

The effects of captive experience on reintroduction survival in carnivores: A review and analysis

This review focuses on the success and survivorship of captive-born versus wild-caught carnivores used in reintroductions. Previous reviews have suggested that reintroduction projects using captive-born animals are less likely to be successful than projects translocating wild-caught animals. The purpose of this paper is to examine this statistically and investigate how captivity may affect the survival of reintroduced carnivores. We examined results published in previous reviews, and found evidence to support that reintroduction projects using wild-caught animals are significantly more likely to succeed than projects using captive-born animals. We further compiled our own review of 45 case studies in carnivore reintroduction projects (in 17 species across 5 families) to investigate survival rates rather than overall project ‘success’. We found that (1) wild-caught carnivores are significantly more likely to survive than captive-born carnivores in reintroductions; (2) that humans were the direct cause of death in over 50% of all fatalities and (3) that reintroduced captive-born carnivores are particularly susceptible to starvation, unsuccessful predator/competitor avoidance and disease.     

Fatty acid patterns of phospholipids and lipopolysaccharides in the characterisation of microbial communities in soil: a review

 This review discusses the analysis of whole-community phospholipid fatty acid (PLFA) profiles and the composition of lipopolysaccharides in order to assess the microbial biomass and the community structure in soils. For the determination of soil microbial biomass a good correlation was obtained between the total amount of PLFAs and the microbial biomass measured with methods commonly used for determinations such as total adenylate content and substrate-induced respiration. Generally, after the application of multivariate statistical analyses, whole-community fatty acid profiles indicate which communities are similar or different. However, in most cases, the organisms accounting for similarity or difference cannot be determined, and therefore artefacts could not be excluded. The fatty acids used to determine the biomass vary from those which determine the community structure. Specific attention has to be paid when choosing extraction methods in order to avoid the liberation of fatty acids from non-living organic material and deposits, and to exclude the non-target selection of lipids from living organisms, as well. By excluding the fatty acids which were presumed to be common and widespread prior to multivariate statistical analysis, estimates were improved considerably. Results from principal component analysis showed that determining the levels of fatty acids present in both low and high concentrations is essential in order to correctly identify microorganisms and accurately classify them into taxonomically defined groups. The PLFA technique has been used to elucidate different strategies employed by microorganisms to adapt to changed environmental conditions under wide ranges of soil types, management practices, climatic origins and different perturbations. It has been proposed that the classification of PLFAs into a number of chemically different subgroups should simplify the evaluating procedure and improve the assessment of soil microbial communities, since then only the subgroups assumed to be involved in key processes would be investigated. Received: 24 August 1998     

The carbon we do not see—the impact of low molecular weight compounds on carbon dynamics and respiration in forest soils: a review

Dissolved organic matter (DOM), typically quantified as dissolved organic carbon (DOC), has been hypothesized to play many roles in pedogenesis and soil biogeochemical cycles, however, most research to date concerning forest soils has focussed on the high molecular weight (HMW) components of this DOM. This review aims to assess the role of low molecular weight (LMW) DOM compounds in the C dynamics of temperate and boreal forest soils focussing in particular on organic acids, amino acids and sugars. The current knowledge of concentrations, mineralization kinetics and production rates and sources in soil are summarised. We conclude that although these LMW compounds are typically maintained at very low concentrations in the soil solution (<50 μM), the flux through this pool is extremely rapid (mean residence time 1-10 h) due to continued microbial removal. Due to this rapid flux through the soil solution pool and mineralization to CO₂, we calculate that the turnover of these LMW compounds may contribute substantially to the total CO₂ efflux from the soil. Moreover, the production rates of these soluble transitory compounds could exceed HMW DOM production. The possible impact of climate change on the behaviour of LMW compounds in soil is also discussed.     

Fate, tree growth effect and potential impact on soil microbial communities of mycorrhizal and bacterial inoculation in a forest plantation

The knowledge of the survival of inoculated beneficial fungal and bacterial strains in the field and the effects of their release on the indigenous microbial communities has been of great interest since the practical use of selected natural or genetically modified microorganisms has been developing. The aim of this study was to monitor, 4 years after plantation into the field site, the effects of Douglas fir (Pseudotsuga menziesii) co-inoculation with the mycorrhiza helper bacterial strain Pseudomonas fluorescens BBc6R8 and/or the fungal strain Laccaria bicolor S238N on seedling growth and on the indigenous bacterial and ectomycorrhizal communities using quantitative and qualitative approaches. The field persistence of the inoculated strains was also monitored. The seedling shoot volume estimate was statistically significantly higher in the fungal inoculated plots in comparison to the non-inoculated plots but no treatment-related changes in the quantitave or qualitative microbial measurements were observed and the inoculated strains could not be detected after 4 years.