猪附红细胞体特异性基因的克隆和PCR诊断方法的建立

根据2003年Hoelzle发表的猪附红细胞体的基因组序列（AJ504999）设计一对特异性引物,对病料样品进行PCR扩增并将其产物克隆到pMD18-T载体后测序,结果表明扩增出的片段为603bp,同源性分析表明该序列与参考基因组序列同源性为100％,反映出我国分离株与国外株其基因无差异,特异性和敏感性试验表明,所建立的PCR诊断方法与常见的支原体、细菌及原虫无交叉反应,能检测到猪附红细胞体血液基因组DNA最低量为0．65ng／mL,该方法具有快速、特异、敏感等特点,为猪附红细胞体病的快速诊断及流行病学调查提供了新的手段。     

猪附红细胞体PCR检测方法的建立和初步应用

基于猪附红细胞体广东株16S rRNA基因的序列特点，设计合成种特异性引物，建立了猪附红细胞体PCR检测方法。该方法能特异性扩增523bp的猪附红细胞体16SrRNA基因片段，而对猪丹毒杆菌G4T10株、猪链球菌STl71株、多杀性巴氏杆菌E0630株、猪胸膜肺炎放线杆菌、猪肺炎支原体、鸡毒支原体和猫血巴尔通氏体CA株的基因组DNA没有扩增带出现。对猪附红细胞体基因组DNA的最小检测量为160pg。通过对38份临床样品的检测，8份为猪附红细胞体感染阳性，其余为阴性。结果表明，建立的PCR检测方法具有极高的敏感性和特异性，可用于急性猪附红细胞体病和临床健康带菌猪的诊断。     

猪附红细胞体巢式PCR诊断方法的建立及初步应用

为建立一种更加准确、敏感的猪附红细胞体检测方法,本试验根据猪附红细胞体特异的DNA序列(AJ504999)设计2对巢式PCR引物,建立了巢式PCR检测方法。筛选该检测方法的最佳反应条件,并进行了特异性、敏感性及临床样本检测试验。结果表明,建立的巢式PCR对猪附红细胞体基因组DNA能扩增出特异性片段,而对弓形虫、链球菌、牛瑟氏泰勒虫、牛附红细胞体基因组DNA扩增反应结果均为阴性;DNA最低检测量为0.124 fg/μL;通过对55份临床样本的检测,该巢式PCR较常规PCR的阳性检出率高23.7%。本试验为猪附红细胞体病的诊断提供了一种更为特异、敏感的检测技术。     

犬附红细胞体PCR检测方法的建立

目的 步建立犬附红细胞体PCR检测方法。方法 据已发表的附红细胞体基因序列,设计了一对特异性引物,以犬附红细胞体基因组DNA和附红细胞体可疑病犬样品DNA为模板,聚合酶链式反应（PCR）扩增,扩增产物经克隆测序分析。结果 CR扩增产物大小为541bp,序列分析表明与GenBank数据中发表的序列一致,表明这套引物成功扩增出目的基因序列,但正常犬血样品DNA和弓形虫、伊氏锥虫、吉氏巴贝斯虫、犬细小病毒、犬瘟热的DNA样品都不能扩增出目的基因片段。结论 研究建立的PCR方法可以用于犬附红细胞体的检测,为犬附红细胞体病的诊断及分子流行病学的调查提供了新的手段。     

猪附红细胞体50S核糖体基因PCR检测方法的建立及应用

根据GenBank上最新发布的猪附红细胞体基因组序列(NC-015155)设计一对引物,并以吉林省延边地区猪附红细胞体基因组DNA为模板,建立猪附红细胞体50 S核糖体基因PCR诊断方法,通过特异性、敏感性及临床应用试验验证,快速准确的检测出猪附红细胞体.试验结果显示,建立的猪附红细胞体PCR诊断方法扩增片段大小为10...     

猪源附红细胞体rnpB基因的克隆与序列比较

为了解猪源附红细胞体(Mycoplasma spp.)RNA酶P RNA(RNase P RNA,rnpB)基因序列变异状况,将实验室保存的经16S rRNA基因序列分析鉴定的53份猪源附红细胞体阳性DNA样品用于rnpB基因的扩增,扩增产物克隆至pMD18-T载体并进行序列测定。将获得的序列与GenBank登录的猪附红细胞体(Mycoplasma suis)德国分离株rnpB基因序列(登录号:EF523602)进行分析和比对,利用MEGA5.0软件构建系统发育树,并与16S rRNA判定结果进行比较。结果共得到42条猪附红细胞体rnpB基因和11条小附红细胞体(M.parvum)rnpB基因序列。猪附红细胞体上海分离株rnpB基因与GenBank登录的猪附红细胞体德国分离株rnpB基因之间的核苷酸序列相似性为98.1%~100.0%;小附红细胞体上海分离株rnpB基因与猪附红细胞体德国分离株rnpB基因序列的相似性为91.0%,与猪附红细胞体上海分离株rnpB基因序列相似性为90.0%~91.0%。系统进化分析显示猪附红细胞体rnpB基因与小附红细胞体rnpB基因分布在不同聚簇上,与16S rRNA基因序列鉴定结果一致。     

温氏附红细胞体部分16S rRNA基因的序列测定和分析

从确诊为附红细胞体感染的黄牛无菌采集血样，抽提附红细胞体基因组DNA，用实验设计的能扩增多种动物血营养菌部分16SrRNA基因的通用引物进行PCR扩增，结果扩增出大小约为370bp的DNA片段。PCR产物序列测定和系统进化分析显示，实验获得的核苷酸序列为温氏附红细胞体的16SrRNA基因，与国外报道的温氏附红细胞体的同源性为97％。反映出不同地理株的温氏附红细胞体存在一定的遗传差异，为牛附红细胞体病的诊断和分子流行病学研究提供科学依据。     

猪附红细胞体膜蛋白OxaA基因的克隆及生物信息学分析

为研究猪附红细胞体膜蛋白OxaA的结构及其在免疫保护中的功能,根据GenBank上发表的猪附红细胞体(猪支原体NC_015153.1)全基因组序列中膜蛋白OxaA基因,对猪附红细胞体膜蛋白OxaA基因进行PCR扩增、克隆、序列测定及生物信息学分析。结果:PCR扩增基因全长840 bp,编码279个氨基酸,与GenBank(NC_015153.1)中对应序列同源性为98%,测序结果已提交GenBank(登录号为JN247625);生物信息学软件分析表明,膜蛋白OxaA是稳定型亲水性的蛋白,柔性区域呈散在性分布,以α-螺旋为主,主要有3个抗原表位区域。     

犬附红细胞体PCR检测方法的建立及应用

通过将GenBank上报道的犬附红细胞体16S rRNA基因序列与其他物种同源序列进行比对,取其种间特异性和种内保守性较高区域设计1对引物,以吉林省延边地区犬附红细胞体基因组DNA为模板进行PCR扩增,并进行特异性、敏感性试验验证,建立犬附红细胞体PCR诊断方法,应用于临床检测。结果表明:该方法可成功扩增出大小为529 bp的犬附红细胞体片段,与GenBank中German no.1(AY150973.1)序列同源性为98.5%。其最低DNA检测量为25 fg/μL,不与犬巴贝斯虫、犬弓形虫及猪附红细胞体等病原体基因组产生交叉反应。同时通过对57份犬血液样本的检测结果说明,该方法检出率明显高于姬姆萨染色镜检法,且避免了假阳性。本试验所建立的PCR检测方法具有特异、敏感、准确等优点,为犬附红细胞体病的诊断提供了一种可靠的方法。     

猪附红细胞体16S rRNA基因的序列测定和系统进化分析

从确诊为猪附红细胞体感染的猪场，无菌采集血样，抽提猪附红细胞体基因组DNA，采用真细菌的通用引物进行16S rRNA基因扩增，对扩增产物进行克隆和测序。从3个地理位置不同的猪场均成功地扩增出长度为1469bp的核苷酸序列。系统进化分析表明，3个猪场样品所测序列一致性达99．52％以上，具有相同的基因型，但与国外报道的猪附红细胞体Illinois株同源性为95％，属于同一基因群，但基因型不同；所有种类的附红细胞体和血巴尔通氏体组成同一进化分支，这类血营养菌与支原体科，支原体属的病原最靠近(75％)，而与立克次氏体目的病原较远(70％)。上述研究证实，广东所流行的猪附红细胞体是一种新基因型的猪附红细胞体，建议命名为猪附红细胞体广东株型；为反映进化关系，猪附红细胞体和其它血营养菌应划归于支原体科的支原体属。     

Development of a diagnostic PCR assay based on novel DNA sequences for the detection of Mycoplasma suis (Eperythrozoon suis) in porcine blood

An efficient method of control of porcine eperythrozoonosis (PE) caused by Mycoplasma suis is eradication of infection by detection and removal of infected carrier animals. At present, only a few tests are available for the diagnosis of these latent M. suis infections in pigs. The objective of this study was to develop a PCR assay based on novel DNA sequences for the identification of M. suis-infected pigs. A 1.8 kb EcoRI DNA fragment of the M. suis genome was isolated from the blood of pigs experimentally infected with M. suis. Specificity of the DNA fragment was confirmed by DNA sequence analysis and PCR using primers directed against sequences contained in the 1.8 kb fragment. PCR products of 782 bp in size were amplified only from M. suis particles prepared from the blood of experimentally infected pigs but not from any controls, comprising blood from gnotobiotic piglets and a panel of bacteria including other porcine mycoplasmas. PCR results were confirmed by dot blot hybridisation. The applicability of the PCR assay to diagnose M. suis infections in pigs was evaluated by investigating blood samples from 10 symptomatic pigs with clinical signs typical of porcine eperythrozoonosis and blood samples from 10 healthy pigs. The M. suis-specific PCR product was amplified from all samples taken at episodes of acute disease as well as from samples taken during the latent stage of infection, thus demonstrating the suitability of the PCR assay for detecting latent infected carrier animals.     

猪弓形虫特异性PCR诊断方法的建立及应用

以猪弓形虫核糖体DNA第一内转录间隔区(ITS1)序列为模板自行设计引物,建立了猪弓形虫病特异PCR诊断方法,并从弓形虫国际标准强毒株RH速殖子和疑似T.gondii感染猪全血及肺脏组织样品基因组DNA中扩增出了预期长度273bp的目的DNA片段。敏感性和特异性试验结果显示,该PCR方法能检测到的最低DNA量为0.001ng,且与相关的9种对照寄生虫、细菌和病毒无交叉反应。用建立的PCR诊断方法对临床30份猪弓形虫疑似病料和60份健康猪抗凝全血样品进行检测,结果30份病料中有24份呈现阳性;60份健康猪血中有5份为阳性;随机取两个临床样品的阳性PCR扩增片段进行克隆测序表明,二者序列与Gen-Bank中已登录的猪弓形虫ITS1基因相应部分序列完全相同。以上表明所建立的PCR方法具有高度的敏感性和特异性;本研究为猪弓形虫病的快速诊断提供了一种新方法。     

Recombinant DNA probe detecting Eperythrozoon suis in swine blood

A genomic library to Eperythrozoon suis DNA was constructed in lambda gt11, and from this library, E suis clone KSU-2 was identified as a potential diagnostic probe. In hybridization experiments that used 100-microliters samples of blood collected in chaotropic salt solutions, the KSU-2 probe hybridized strongly with purified E suis organisms and blood samples from splenectomized swine that were parasitized with E suis. However, the probe under stringent conditions did not give radiographic indications of hybridizing with equine blood DNA, bovine blood DNA infected with Anaplasma marginale, canine blood DNA infected with Ehrlichia canis, feline blood DNA infected with Haemobartonella felis, or uninfected swine blood DNA.     

猪链球菌种与9型猪链球菌二重PCR检测方法的建立及应用

为了建立猪链球菌(Streptococcus suis,SS)种与9型猪链球菌(SS9)的快速诊断方法,本研究根据GenBank已登录的SS种特异性基因gdh和SS9型特异性基因CPS9H设计引物,以标准SS9株基因组DNA为模板,建立了SS种和SS9的二重PCR检测方法,并进行了特异性、敏感性和重复性试验;利用所建立的方法对检测疑似猪链球菌感染猪临床样品,并与常规细菌分离鉴定方法进行了比对。结果表明成功建立SS种和SS9型猪链球菌二重PCR检测方法,该方法的检测灵敏度可达100个CFU,特异性和重复性好;利用该方法对34份临床分离自疑似猪链球菌感染样品的细菌培养物进行了应用检测试验,其中有11份样品为gdh阳性,11份gdh阳性样品中有3份样品同时为SS9阳性。本研究成功建立了SS种与SS9型猪链球菌二重PCR检测方法,可用于猪链球菌种和SS9型猪链球菌的快速诊断。     

Identification and distribution of putative virulent genes in strains of Streptococcus suis serotype 2

In order to identify gene sequences unique to the virulent strains, suppression subtractive hybridization (SSH) was conducted using virulent Streptococcus suis type 2 (SS2) strain HA9801 and avirulent S. suis type 2 strain T15. Thirty genomic regions were absent in T15, and the DNA sequences of these regions in HA9801 were determined. These DNA fragments, containing putative virulence genes, encoded 28 proteins that were homologous to proteins involved in various aspects of cellular surface structure, molecular synthesis, energy metabolism, regulation, transport systems and others of unknown function. According to the published SS2 genomic sequence of the Chinese strain 98HAH33, PCR primers for 14 significant DNA fragments were designed and used for detection of the distribution of these fragments in S. suis strains from different sources, serotypes, regions, groups and times. The results showed that these 14 DNA fragments were widely distributed in 37 detected SS2 strains, yet were absent among the avirulent strain T15. Moreover, these fragments could be detected in other serotypes of S. suis, but each serotype had a different distribution of the fragments.     

Development of a Brucella suis specific hybridisation probe and PCR which distinguishes B. suis from Brucella abortus.

A genomic library was prepared from Brucella suis DNA (MboI digested) and cloned into the BamHI site of pUC18. Colony hybridisation using a probe prepared from purified B. suis DNA labelled with alpha 32P was carried out to identify colonies of interest. About 20 colonies, which gave an intense signal upon hybridisation with whole B. suis genomic DNA as a probe, were selected. Because of the high degree of DNA homology between B. suis and Brucella abortus, a short probe was chosen as it would more likely give species specificity. Of seven fragments selected to probe whole B. suis, B. abortus, and Yersinia enterocolitica DNA, one was found to hybridise with B. suis only. The probe was sequenced in two directions and sense and anti sense primers of 25bp in length were chosen to yield a product of 421bp. After optimisation of the PCR, a product of 420bp was obtained with B. suis template DNA and two bands of 420 and 650bp were detected with B. abortus template DNA. This is the first reported PCR of the Brucella genome where a single pair of primers will discriminate between B. suis and B. abortus. No band was observed when the two primers were used to amplify E. coli, Y. enterocolitica, Enterobacter cloacae, Staphylococcus aureus, Streptococcus uberis, Corynebacterium bovis, or Serratia marcescens template DNA.