UHRF1 plays a role in maintaining DNA methylation in mammalian cells

Epigenetic inheritance in mammals relies in part on robust propagation of DNA methylation patterns throughout development. We show that the protein UHRF1 (ubiquitin-like, containing PHD and RING finger domains 1), also known as NP95 in mouse and ICBP90 in human, is required for maintaining DNA methylation. UHRF1 colocalizes with the maintenance DNA methyltransferase protein DNMT1 throughout S phase. UHRF1 appears to tether DNMT1 to chromatin through its direct interaction with DNMT1. Furthermore UHRF1 contains a methyl DNA binding domain, the SRA (SET and RING associated) domain, that shows strong preferential binding to hemimethylated CG sites, the physiological substrate for DNMT1. These data suggest that UHRF1 may help recruit DNMT1 to hemimethylated DNA to facilitate faithful maintenance of DNA methylation.     

Calmodulin plays a pivotal role in cellular regulation

The role of calcium ions (Ca2+) in cell function is beginning to be unraveled at the molecular level as a result of recent research on calcium-binding proteins and particularly on calmodulin. These proteins interact reversibly with Ca2+ to form a protein . Ca2+ complex, whose activity is regulated by the cellular flux of Ca2+. Many of the effects of Ca2+ appear to be exerted through calmodulin-regulated enzymes.     

Island biology and ecosystem functioning in epiphytic soil communities

Although island attributes such as size and accessibility to colonizing organisms can influence community structure, the consequences of these for ecosystem functioning are little understood. A study of the suspended soils of spatially discrete epiphytes or treetop "islands" in the canopies of New Zealand rainforest trees revealed that different components of the decomposer community responded either positively or negatively to island size, as well as to the tree species that the islands occurred in. This in turn led to important differences between islands in the rates of ecosystem processes driven by the decomposer biota. This system serves as a model for better understanding how attributes of both real and habitat islands may affect key ecosystem functions through determining the community structure of organisms that drive these functions.     

Predator-prey role reversal in a marine benthic ecosystem

Two closely located islands on the west coast of South Africa support widely different benthic communities. The biota at Malgas Island is dominated by seaweeds and by rock lobsters that consume settling mussels, thereby preventing the establishment of the mussels. They also prey on whelks, although one speces, Burnupena papyracea, is protected from predation by a commensal bryozoan that covers its shell. Marcus Island has extensive mussel beds, but rock lobsters and seaweeds are virtually absent; whelks (mostly Burnupena spp.) occur at high densities. Rock lobsters transferred to Marcus Island were overwhelmed and consumed by the whelks, reversing the normal predatorprey relation between the two species. These two contrasting communities persisted during 4 years and may represent multiple states of the same ecosystem. This effective change of roles between a prey species and its chief predator may provide an intrinsic mechanism to maintain these states following the initial exclusion of the predator.     

Alanine: key role in gluconeogenesis

Of 20 amino acids measured, alanine is the principal amino acid released by forearm muscle of man, in accord with its being the principal amino acid extracted by liver for gluconeogenesis. This occurs in both the postabsorptive state and after 4 to 6 weeks of starvation, when total amino acid release is markedly diminished.     

Metabolite profiling identifies a key role for glycine in rapid cancer cell proliferation

Metabolic reprogramming has been proposed to be a hallmark of cancer, yet a systematic characterization of the metabolic pathways active in transformed cells is currently lacking. Using mass spectrometry, we measured the consumption and release (CORE) profiles of 219 metabolites from media across the NCI-60 cancer cell lines, and integrated these data with a preexisting atlas of gene expression. This analysis identified glycine consumption and expression of the mitochondrial glycine biosynthetic pathway as strongly correlated with rates of proliferation across cancer cells. Antagonizing glycine uptake and its mitochondrial biosynthesis preferentially impaired rapidly proliferating cells. Moreover, higher expression of this pathway was associated with greater mortality in breast cancer patients. Increased reliance on glycine may represent a metabolic vulnerability for selectively targeting rapid cancer cell proliferation.     

Bioluminescent and red-fluorescent lures in a deep-sea siphonophore

Bioluminescence (light production) and fluorescence (re-emission of absorbed radiation as light) are found in an unaccountably diverse array of marine organisms, where their functions are largely unknown. Here we report a deep-sea siphonophore that twitches glowing lures to attract fish. This is rare evidence of bioluminescence used for prey attraction among nonvisual marine organisms. The lures also contain red fluorescent material that shifts the wavelength of emitted light. The existence of a red-luminescent invertebrate suggests that long-wavelength light plays a greater role in marine interactions than previously suspected.     

半干旱区生态恢复关键生态系统识别——以内蒙古自治区和林县为例

我国土地退化严重,且大部分发生在干旱半干旱地区.恢复为何种生态系统类型是生态学研究的重要课题.采用生态功能区划,根据各个生态功能区主体生态系统功能,推导发挥此功能的生态系统类型的方法,识别关键生态系统类型.以内蒙古自治区和林县为例,采用文献调研、实地调查、3S技术等方法,在评价该县生态敏感性、生态服务功能重要性的基础上,将该县划分为3个一级生态区,11个二级生态功能区.根据各个生态功能区的主体生态系统服务功能,分析发挥该功能的可能生态系统类型.再根据全国自然植被区划、气候变化趋势模型以及现状植被类型,识别各个生态功能区的关键生态系统类型.     

山区单季稻田鱼-鸭-稻共育生态系统中主要病虫害控制关键技术的研究

依据生物多样性原理，构建、优化山区单季稻田鱼-鸭-稻共育生态系统，利用系统各生物因子的互作和生态链之间的关系，提高生态系统自身的调控作用。研究表明，通过尽量减少人为非生物因素的介入和干预，如减少化学农药的使用、改变用药组成结构，综合运用抗病（虫）丰产品种、垄畦栽培、应用竹醋液减量使用农药和穗期简化防治等技术，可有效提高生态系统本身鱼、鸭、蜘蛛等天敌对水稻虫害的调控能力，进而达到对水稻主要病虫纹枯病、稻曲病、二化螟、稻飞虱和稻纵卷叶螟的无害化治理。引入单季稻田鱼-鸭-稻共育复合生态系统，可比常规稻田减少1—2次农药施用、防治费用降低24．6％-50．2％，增效306．2—414．5元／667m^2。鱼、鸭达无公害农产品标准要求。     

The peroxisomal matrix shuttling receptor Pex5 plays a role in FB1 production and virulence in Fusarium verticillioides

The peroxisomal matrix oxidase,catalase and peroxidase are imported peroxisomes through the shuttling receptors,which regulates the cellular oxidative homeostasis and function.Here,we report that PTS1 shuttling receptor FvPex5 is involved in the localization of PTS1,utilization of carbon sources and lipids,elimination ROS,cell wall stress,conidiation,fumonisin B₁(FB₁) production,and virulence in maize pathogen Fusarium verticillioides.Significantly,differential expression o...     

Trophic cascades in a formerly cod-dominated ecosystem

Removal of top predators from ecosystems can result in cascading effects through the trophic levels below, completely restructuring the food web. Cascades have been observed in small-scale or simple food webs, but not in large, complex, open-ocean ecosystems. Using data spanning many decades from a once cod-dominated northwest Atlantic ecosystem, we demonstrate a trophic cascade in a large marine ecosystem. Several cod stocks in other geographic areas have also collapsed without recovery, suggesting the existence of trophic cascades in these systems.     

High cristobalite and high tridymite in a middle eocene deep-sea chert

The high-temperature forms of cristobalite and tridymite have been found occurring in a Middle Eocene, radiolarian-rich claystone. Evidence indicates that these crystals formed at low temperature and were chemical precipitates. Scanning electron microscopy, energy-dispersive x-ray analysis (microprobe), and x-ray diffraction provided the data upon which the determinative mineralogy was based.     

A role for DNA-PK in retroviral DNA integration

Retroviral DNA integration is catalyzed by the viral protein integrase. Here, it is shown that DNA-dependent protein kinase (DNA-PK), a host cell protein, also participates in the reaction. DNA-PK-deficient murine scid cells infected with three different retroviruses showed a substantial reduction in retroviral DNA integration and died by apoptosis. Scid cell killing was not observed after infection with an integrase-defective virus, suggesting that abortive integration is the trigger for death in these DNA repair-deficient cells. These results suggest that the initial events in retroviral integration are detected as DNA damage by the host cell and that completion of the integration process requires the DNA-PK-mediated repair pathway.     

In situ measurements of chemical distributions in a deep-sea hydrothermal vent field

Large changes in the concentration of sulfide around a hydrothermal vent in the Galápagos Rift provide direct evidence for the consumption of sulfide by the organisms of the vent community. These changes were detected with a new chemical analyzer capable of measuring silicate, sulfide, oxygen, and temperature on the sea floor at depths of 2500 meters. More than 10,000 measurements showed systematic variations in the sulfide and oxygen concentrations due to biogenic oxidation of sulfide in the hydrothermal solutions. Silicate concentration was highly correlated with temperature, but different trends were observed at different locations.     

Predators accelerate nutrient cycling in a bromeliad ecosystem

Conventional ecological theory predicts that predators affect nutrient cycling by decreasing the abundance or activity of prey. By using a predator-detritivore-detritus food chain in bromeliads, we show that predators can increase nutrient cycling by a previously undescribed, but broadly applicable, mechanism: reducing nutrient export by prey emigration. Contrary to expectations, predation on detritivores increases detrital nitrogen uptake by bromeliads. Predation reduces detritivore emergence and hence export of nitrogen from the system. Detritivores therefore benefit their host plant, but only when predators are present. More generally, our results show that predator loss or extinction can dramatically and unexpectedly affect ecosystem functioning.     

Tomato SlPti5 plays a regulative role in the plant immune response against Botrytis cinerea through modulation of ROS system and hormone pathways

While SlPti5 has been shown to play a crucial role in the regulation of antagonistic genes in Solanum lycopersicum and Arabidopsis against pathogen infection, there have been no comprehensive studies on the effects of SlPti5 on the regulatory response mechanism of reactive oxygen species(ROS) system and hormone pathways during growth and disease resistance of tomato plants. Here, we investigated the function of SlPti5 in the defense response of tomato against Botrytis cinerea utilizing a virus-i...     

Structure of DNMT1-DNA complex reveals a role for autoinhibition in maintenance DNA methylation

Maintenance of genomic methylation patterns is mediated primarily by DNA methyltransferase-1 (DNMT1). We have solved structures of mouse and human DNMT1 composed of CXXC, tandem bromo-adjacent homology (BAH1/2), and methyltransferase domains bound to DNA-containing unmethylated CpG sites. The CXXC specifically binds to unmethylated CpG dinucleotide and positions the CXXC-BAH1 linker between the DNA and the active site of DNMT1, preventing de novo methylation. In addition, a loop projecting from BAH2 interacts with the target recognition domain (TRD) of the methyltransferase, stabilizing the TRD in a retracted position and preventing it from inserting into the DNA major groove. Our studies identify an autoinhibitory mechanism, in which unmethylated CpG dinucleotides are occluded from the active site to ensure that only hemimethylated CpG dinucleotides undergo methylation.