Genetic effects of introduced hatchery stocks on indigenous brown trout (Salmo trutta L.) populations in Spain

Abstract– To assess the levels of gene introgression from cultured to wild brown trout populations, four officially stocked locations and four nonstocked locations were sampled for one to three consecutive years and compared to the hatchery strain used for stocking. Allozyme analysis for 25 loci included those previously described as providing allelic markers distinguishing hatchery stocks and native populations. Different levels of hybridization and introgression with hatchery índividuals were detected in stocked drainages as well as in protected locations. These findings indicate that new policies for stocking and monitoring hatchery fish are needed if gene pools of wild Spanish brown trout populations are to be preserved.     

Genetic refuges for a self‐sustained fishery: experience in wild brown trout populations in the eastern Pyrenees

Abstract – Management policies balancing harvest and conservation of natural populations of fish are difficult to establish, both scientifically and politically. This issue is particularly difficult when those populations represent native genetic resources. Since 1997, several brown trout populations in the eastern Pyrenees Mountains (Spain) were designated as ‘genetic refuges’ under varying fishing regulations, where releases of hatchery‐origin fish are not permitted. We analysed genetic variation in samples of brown trout from six of those refuge populations and four non‐refuge populations within the same region. Each population was sampled in four separate years: 1993, 1999, 2004 and 2006. Our analyses were based on a diagnostic allele (LDH‐C*90) that distinguishes native and exogenous hatchery populations. Comparisons were based on stocking histories before and after refuge designations and on three management strategies: fished, unfished and catch‐and‐release. Overall, we detected significant genetic introgression resulting from past stocking practices despite the current restriction of hatchery releases imposed by the recent genetic refuge policy. However, this new policy has prevented detectable introgression from increasing throughout the region and together with additional measures on length and number of captured fish is contributing to self‐sustained fisheries that are achieving conservation goals. Quick acceptance of ‘genetic refuges’ by anglers in one particular river, the Ter River basin, has been a key factor in protecting native gene pools compared with the Segre River basins where refuges were not readily accepted.     

Stocking impact,population structure and conservation of wild brown trout populations in inner Galicia (NW Spain), an unstable hydrologic region

1. Brown trout (Salmo trutta) is an important conservation resource in the Iberian Peninsula. The Atlantic is considered the most hydrologically stable region for the species, although inner Galicia (NW Spain) shows Mediterranean (unstable) climatic conditions. The Galician region, threatened by past releases of brown trout individuals from central European origin, harbours two native lineages, one of them endemic to the Iberian Peninsula. These populations are thus highly valuable for conservation, as well as being important for recreational fisheries. 2. In total, 546 individuals from 16 sampling sites (15 natural locations from inner Galicia and one from a central European hatchery stock) were genotyped for 11 nuclear markers (10 microsatellite loci and the LDH‐C* locus) to analyse genetic variability, population structure and introgression impact from stocking in order to assess the conservation status of brown trout in the region. Moreover, correlation among hatchery introgression and environmental variables relevant for species population dynamics was also investigated. 3. Genetic variability was within the range of Iberian brown trout (He = 0.500–0.600). Stocking impact was higher than previously reported values for the Atlantic region and was related to environmental instability. Highly significant native population differentiation was observed in the whole region (F_ST = 0.283), at least four main genetic groups being detected across the geographic distribution studied. 4. Conservation strategies at local level (including the creation of genetic refuges and temporal monitoring of genetic composition) are suggested to agencies and administrations for the sustainable management of brown trout.     

Forecasting the genetic influences of red drum stock enhancement in South Carolina

The South Carolina Department of Natural Resources (SCDNR) began stocking red drum, Sciaenops ocellatus (Linnaeus), in 1989 to augment the abundance of juveniles available for recreational harvest in South Carolina estuaries. While stock enhancement can help supplement wild populations under high fishing pressure, releasing hatchery‐raised fish into the wild also presents the risk of decreased genetic diversity. An individual‐based model (IBM) was developed to forecast the genetic influences of stocking on the wild spawning population to inform responsible stocking strategies. Model results indicated the SCDNR red drum stock enhancement programme should maintain mean contributions of stocked fish no greater than 30% per year class over a 45‐year stocking period, coupled with at least 10 effective breeders in the hatchery replaced annually, to maintain current levels of genetic diversity estimated in the wild population. The IBM is a useful tool for hatchery managers to guide responsible stock enhancement.     

Assessment of three strategies practiced by fishery managers for restoring native brown trout (Salmo trutta) populations in Northern French Alpine Streams

Abstract – The efficiency of three strategies carried out by fisheries managers to restore native Mediterranean brown trout populations threatened by non‐native Atlantic populations were assessed. The strategies tested were (i) genetic refuge area where stocking is banned, (ii) stocking with Mediterranean fry and (iii) translocation of wild Mediterranean spawners. Using two discriminatory microsatellite loci between Atlantic and Mediterranean alleles, we compared the genetic composition of samples before and after the changes of practices. The three strategies had several detectable effects in the standing populations causing strong temporal changes in departures from Hardy–Weinberg equilibrium and linkage equilibrium between loci and the apparition of new Mediterranean alleles. The significant reductions in the proportions of Atlantic alleles observed over time can mostly be explained by the disappearing of the pure non‐native Atlantic trout after the stopping of hatchery releases. The results, however, also suggest that the active strategies carried out by managers led to intraspecific introgression between both non‐native Atlantic and native Mediterranean strains.     

Microsatellite diversity assessment of brown trout (Salmo trutta) population structure indicate limited genetic impact of stocking in a Norwegian alpine lake

Abstract – Releases of non-native trout often result in introgression into natural populations and negative genetic effects. The causal ecological mechanisms for a wide range of reported outcomes are poorly understood. Brown trout population structure in an alpine lake with three major recruitment streams was assessed by analysis for eight DNA microsatellite markers and compared with the non-native population. The lake is subject to a 40-year recorded history of stocking with exogenous trout. No certain deviations from Hardy–Weinberg equilibrium were found. Tests for population differentiation and genetic distance indicated separate populations for all the sampled areas, and with the exogenous population as a cluster quite different from the others. Assignment tests indicated that only a small fraction of the fish sampled from the lake originated from the introduced trout strain (<3%). Wild discriminate, naturally reproducing populations characterize this alpine lake ecosystem, in spite of 40 years of stocking, which appears to have had a limited impact. It is unlikely that this population structure can ultimately be explained by trout movement patterns. Genetic analysis needs to be supplemented by studies of local life history strategies, to evaluate the relative importance of local adaptation versus random genetic differentiation, because implications for conservation and management are different.     

Electrophoretic evaluation of a supplemental stocking programme for brown trout, Salmo trutta L.

Abstract. Over a 15-year period hatchery brown trout, Salmo trutta L., have been added 10 Lower Lough Erne, Northern Ireland to supplement declining native populations. Introductions have mainly comprised eyed ova and fingerlings, stocked into a number of rivers in the Erne drainage. Utilizing a natural genetic tag an electrophoretic assessment of the stocking programme was undertaken. The percentage hatchery genetic contribution in trout populations varied widely from river to river (19%-91%). Lough-caught brown trout (3+ and older) showed a substantial (21·5%) hatchery genetic component. Introgression of native-and hatchery stocks was evident. The resultant deleterious genetic consequences for the conservation of the unique Lough Erne brown trout gene pool arc discussed and alternative management strategies are proposed.     

Ecological genetics: introductory note

Abstract– The eight papers resulting from the Ecological Genetics session of the symposium Ecology of Stream Fish: State of the Art and Future Prospects (Luarca, Spain, April 1998) describe the use of molecular genetic markers to investigate questions of population distinctness, interbreeding, and adaptation in five salmonid species. Widely contrasting ecological distinctions described in four species indigenous to western North America [steelhead (rainbow) trout, sockeye salmon, pink salmon and bull trout] reflect past natural and human-induced activities, serving to guide future management and conservation actions through optimizing adaptive opportunities, and preventing genetic losses through localized extinctions. Studies of brown trout contrast widespread introgressions from exogenous hatchery introductions that threaten the integrity of native Spanish populations with a reduced threat based on use of indigenous fish in Portuguese hatcheries. A 9-year study of natural progeny of two genetically distinct Swedish brown trout populations introduced to a previously trout-free area identifies apparent local adaptations as a model to guide other translocations.     

Survival and growth of hatchery and wild brown trout (Salmo trutta) parr in three Austrian headwater streams

Brown trout populations of three headwater streams in the Northern Limestone Alps of Austria were supplemented by three‐month‐old hatchery‐reared parr from a wild and locally adapted strain and a nonresident domesticated hatchery strain. Growth and survival were monitored with three surveys over a period of 16 months after stocking. Fish descending from the wild reared origin strain demonstrated higher survival rates than the hatchery strain. Differences in growth were found among the investigated streams but not among the investigated strains. The differing temperature regimes of the streams were considered as the primary factor causing those disparities. We conclude that stocking measures had little or no additive effect on successful natural reproduction, as the resident wild brown trout performed significantly better than the stocked fish.     

Genetic identification of native populations of fluvial white-spotted charr <Emphasis Type="Italic">Salvelinus leucomaenis</Emphasis> in the upper Tone River drainage

ABSTRACT:   Stocking of exogenous, hatchery-reared white-spotted charr Salvelinus leucomaenis has been conducted throughout much of their range in Honshu Island, Japan, to increase angling opportunities. Although the native charr populations are thought to have declined because of hybridization with introduced fish, their distribution and genetic status have been uncertain. Fine population structures of charr in the upper Tone River drainage were examined using mitochondrial DNA and microsatellite analyses so as to clarify the presence of native populations. One common mtDNA haplotype was detected in all populations in the Ohashi River and Watarase River, and four and one tributary populations were monomorphic for such haplotypes, respectively. However, several haplotypes, considered to have originated from stocked hatchery fish, were observed in the stocked and the remaining populations. Judging from the genetic integrity over a fine geographic scale, the former were considered as indicative of native populations and the latter as admixtures with hatchery fish. Comparisons of genetic diversity, deviations from the Hardy–Weinberg equilibrium, principal component analysis, and relatedness estimations based on microsatellite DNA can also provide evidence for distinguishing native populations from those influenced by hatchery fish.     

Survival and distribution of pond- and hatchery-reared 0+ brown trout, Salmo trutta L., released in a Swedish stream

During 1985-88, a total of 17500 under-yearling (0+) brown trout. salmo trutta L., were released in Låktabäcken Creek in Swedish Lapland. Of these, 15500 had been reared in a pond adjacent to the creek during their first summer, where they fed on natural prey. The other 2000 were conventionally reared hatchery fish fed dry food pellets. All fish were released in the autumn (size 6O-70mm) at the confluence of the pond outlet and the creek. Electrofishing revealed that the stocked fish gradually spread downstream from the point of release at the expense of the resident wild trout population. In 1989, stocked fish accounted for 70-90% and 30-50% of the trout population in the upper and lower stretches of the creek respectively. No long-term changes in total trout densities or standing crop occurred as a result of stocking. First-year survival of fish released in the creek varied between 15 and 30% over the 4 years. After 3 years, 5% of the stocked fish remained in the creek. Planted fish grew less rapidly than wild fish during the first year in the creek. Pond fish had a higher survival rate than hatchery fish and showed a greater propensity to disperse from the point of release.     

Current status of the brown trout (Salmo trutta) populations within eastern Pyrenees genetic refuges

Since the end of the 20th century, some headwaters of rivers in the eastern Pyrenees have been designated as genetic refuges to protect remaining native brown trout (Salmo trutta) diversity. The declaration was based on limited or no evidence of genetic impact from released non‐native Atlantic hatchery fish. Hatchery releases were completely banned into the genetic refuges, but pre‐existing fishing activities were maintained. Specific locations in each refuge have been monitored every 2–3 trout generations to update genetic information to accurately assess the contribution of these reservoirs to the preservation of native brown trout gene pools. This work updates genetic information to year 2014 in three of these locations (in Ter, Freser and Flamisell rivers). Previous studies identified hatchery introgressed populations within refuges and suggested discrepancies between the underlying intention of the genetic refuges and the gene pools detected. Therefore, we also examined genetic divergences among locations inside refuge river segments. Combined information at five microsatellite and the lactate dehydrogenase C (LDH‐C*) loci showed reduced but significant temporal native allele frequency fluctuations in some of the above specific locations that did not modify overall levels of local diversity and river divergences. Bayesian clustering analyses confirmed the presence of differentiated native units within each genetic refuge. Some locations of the Freser River within the genetic refuge area showed high hatchery impact of non‐native fish (over 20%). We discuss additional local actions (releases of native fish, selective removals and fishery reinforcement with sterile individuals) to improve the conservation objective of genetic refuges.     

Genetic diversity within sea trout population from an intensively stocked southern Baltic river,based on microsatellite DNA analysis

Sea trout, Salmo trutta L., populations in the Slupia River basin have been affected by mass stocking with smolts and fry. This work is focused on a small‐scale differentiation in sea trout populations from one basin with a strong emphasis on the relationship between wild and hatchery origin fish. A total of 216 sea trout were genotyped at 10 microsatellite loci. Global F_ST obtained by amova was low at 0.0165. Pairwise F_ST were significant for all tests except wild and stocked adults. The highest pairwise difference was found between the hatchery sample and Kwacza (F_ST = 0.038). Analysis of the genetic structure revealed micro‐geographical differentiation with four subpopulations. The quality of the artificial spawning was found not to be adequate with a high risk of adverse effects to the whole population. All future stocking actions in the basin should consider the existing population structures.     

Foreign brown trout in protected landscapes as a consequence of connectivity

Abstract To preserve the local genetic patrimony of wild aquatic species, population enhancement should be limited to supportive breeding of native lineages and controlled releases in target areas with depleted population size. This is the case of brown trout, Salmo trutta L., in northern Iberia, a species of high economic and cultural value in the region. Employing a combination of conserved and hypervariable genetic markers, illegal stocking of domestic brown trout in protected areas (National Park, Natural Reserve) within the Cantabric chain was detected. The most likely origin of the domestic individuals was determined by assignment tests to hatchery stocks as a result of past releases conducted downstream and out of the protected areas. Where connectivity exists along a water course, the entire drainage should be considered as a single management unit to preserve the native genetic diversity of upstream protected areas.     

Introgressive hybridization between native and non‐local steelhead (Oncorhynchus mykiss) of hatchery origin

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An electrophoretically-detectable genetic tag for hatchery-reared brown trout (Salmo trutta L.)

The feasibility of incorporating a unique genetic marker into a hatchery strain of brown trout is investigated. The allele Pgi-3(110) is shown to have a very limited distribution among native trout populations in Great Britain and Ireland yet is present, at low frequency, in all three hatchery stocks examined. The potential therefore exists to breed a strain of hatchery brown trout homozygous for the Pgi-3(110) allele. Individuals of such a strain could be unambiguously distinguished from virtually all native stocks. The usefulness of the genetic tag is enhanced by the strong expression of Pgi-3 in adipose fin, permitting simple biopsying. Data from population surveys and the monitoring of experimental progeny suggest selective equivalence among Pgi-3 genotypes.     

Otter (Lutra lutra) predation on stocked brown trout (Salmo trutta) in two Danish lowland rivers

Abstract –  This study aimed to evaluate otter predation on stocked trout. Large hatchery-reared trout (16–30 cm) were stocked into two Danish rivers with different fish populations. Otter diet before and after trout stocking was determined by analysing 685 spraints, collected regularly during the 35-day study period. Fish composition in the rivers before stocking was assessed by electrofishing. In River Trend, a typical trout river, the proportion of trout in the otter diet increased from 8% before stocking to 33% a few days after stocking. Moreover, trout lengths in the diet changed significantly towards the lengths of stocked trout, indicating that newly stocked trout were preferred to wild trout. In River Skals, dominated by cyprinids, there was no change in otter diet after stocking of hatchery trout, i.e., these were ignored by otter. Otter predation should be taken into account together with fish and bird predation, when stocking is used as a measure for conserving endangered salmonid populations.     

Effects of stocked trout on native fish communities in boreal foothills lakes

Nasmith LE, Tonn WM, Paszkowski CA, Scrimgeour GJ. Effects of stocked trout on native fish communities in boreal foothills lakes.
Ecology of Freshwater Fish 2010: 19: 279–289. © 2010 John Wiley & Sons A/S Abstract – Ecological effects of stocking nonnative trout into lakes are receiving increased attention, especially in alpine environments. We assessed effects of stocked trout on native forage fishes in the boreal foothills of Alberta (Canada) by comparing fish density, population size structure and spatial and temporal activities in stocked and unstocked lakes over 3 years (2005–2007). The numerically dominant dace (primarily Phoxinus spp.) were larger in stocked lakes, consistent with size‐limited predation. Dace were also more crepuscular and concentrated on the lake‐bottom in stocked lakes, compared to more daytime activity in the water column in unstocked lakes. There were, however, no demonstrable effects of trout on the abundance of forage fish. The lack of major population‐level impacts of stocked trout suggests that current stocking practices, characteristics of boreal foothill lakes (e.g. thermal structure, abundant invertebrates, dense macrophytes) and/or behavioural adjustments of forage fish contribute to healthy native fish populations in our stocked lakes.     

Validity of fluctuating asymmetry as a gauge of genetic stress in ayu stocks

An increasing demand for stocking of hatchery-reared ayu, Plecoglossus altivelis, has aroused concerns about their genetic status which has an effect on their post-stocking performance and the conservation of native biodiversity. Instead of costly analysis, fluctuating asymmetry (FA) was examined to test its suitability as an indirect measure of genetic diversity. Two bilateral traits, pectoral and pelvic fin rays, were targeted, and two wild and four hatchery populations of ayu were sampled for comparison. Frequency of FA in soft-rays was not similar between specimens in both pelvic and pectoral fins. The wild populations did not show FA incidences lower than the hatchery populations, suggesting a considerable degree of environmental stress operating in the wild populations. Comparison between the hatchery populations showed overall increasing FA incidence with the decrease in genetic diversity, although the correlation was not complete in detail. In conclusion, FA can be used as a convenient tool to compare genetic status, but quantified evaluation is rather limited to monitoring changes in the genetic variation within a hatchery population.     

Genetic Introgression Between Arctic Charr (Salvelinus Alpinus) and Brook Trout (Salvelinus Fontinalis) in Bavarian Hatchery Stocks Inferred from Nuclear and Mitochondrial DNA Markers

Nuclear insulin-like growth factor 2 gene (IGF-2), growth hormone 1 gene (GH-1) and internal transcribed spacer 1 (ITS-1) of the ribosomal DNA as well as the mitochondrial NADH-3 and NADH-4 dehydrogenase genes (ND-3/4) exhibited species-specific restriction fragment patterns and three microsatellite loci (Sfo18, Ssa85 and Ssa197) had non-overlapping allele size ranges in Arctic charr and brook trout and were used as diagnostic markers for testing genetic purity of hatchery stocks and wild populations of Arctic charr and brook trout in Bavaria, Germany. Screening of four wild populations (three in Arctic charr and one in brook trout) revealed only a single hybrid (back-cross to brook trout) individual in L. Starnberg. In contrast, in three (out of five) hatchery stocks of Arctic charr and in both hatchery stocks of brook trout hybrids were detected with the frequency from 3 to 100%. Three hatchery stocks (SS2, SA and BS1) represent a hybrid swarm because they contained a very high proportion of hybrids (from 83 to 100%) and most or all hybrid individuals had alien alleles at only one or a few of six unlinked diagnostic loci, indicating that post-F₁ hybrids represent the majority of individuals in these stocks and introgression has taken place. Release or escape of introgressed individuals from hatcheries into natural water bodies should be avoided in order to protect the biological diversity and genetic integrity of native fish populations.