Monitoring of the genetic variability of the hatchery and recaptured fish in the stock enhancement program of the rare species barfin flounder <Emphasis Type="Italic">Verasper moseri</Emphasis>

ABSTRACT:   In relation to the stock enhancement program for barfin flounder, hatchery juveniles produced in 2001 were genotyped using microsatellite DNA markers (msDNA) and then released to natural waters. Subsequently, recaptured individuals, designated as 'tentative recaptured', were examined using msDNA. In order to evaluate the effectiveness of the stock enhancement program, pairwise F _ST and genic differentiation tests were used to estimate the genetic divergence between the wild samples, the hatchery broodstock, and the tentative recaptured samples. Analysis showed significant differentiation among these three groups. Pedigree determination by msDNA was used to establish the origin of the tentative recaptured individuals, in order to elucidate whether they were hatchery produced, 'real recaptured', or wild specimens. Wild individuals were not found. The effective population size of the real recaptured stock was very low ( N _e = 16.6). Equal family survivability was observed between the released and real recaptured stocks, indicating that the genetic variability of the released stock was maintained in the natural environment. Future broodstock management, breeding designs, and family contribution equalization of the offspring to be released will be required in this rare species to avoid unintended genetic differentiation between the wild population and the hatchery broodstock.     

Morphological conditioning of a hatchery-raised invertebrate,Callinectes sapidus,to improve field survivorship after release

For recruitment-limited, severely depleted fishery stocks, stock enhancement may become an important technique in the return of population sizes to sustainable levels. Aquaculture-reared individuals, however, may face some disadvantages upon release into the wild due to differences between natural conditions and the hatchery. The goal of this study was to test whether field survivorship of hatchery-raised blue crabs, Callinectes sapidus, could be improved by simple conditioning steps, taking advantage of phenotypic plasticity in certain traits. This species is currently the focus of a preliminary stock enhancement program in the Chesapeake Bay. Results indicate that unconditioned hatchery crabs had lower survivorship than wild crabs in the field and differed in carapace color and lateral spine length. Both traits were plastic. Carapace color was changeable within 1–2 days, without a molt, upon the exposure of crabs to new substrates. However, colors within the range produced in this study did not significantly affect survivorship in a field or a laboratory experiment. Change in spine length required exposure to predators for 1–4 weeks. Exposure to fish predators resulted in increased spine length, though exposure to adult blue crabs had no significant effect. Crabs with lengthened spines had significantly higher survivorship in both laboratory and field experiments, suggesting that this feature may be one on which to focus large-scale conditioning efforts. Results of this study suggest a level of phenotypic plasticity that may contribute to the blue crab's ability to take advantage of multiple estuarine habitat types. On a more applied level, results of this study suggest that at least some deficiencies in hatchery-raised organisms can be alleviated and would likely lead to improved success and efficiency of stock enhancement efforts. Similar studies on other hatchery-raised invertebrates and finfishes may also lead to improvements in their enhancement programs.     

Modelling the effects of reserve size and fishing mortality for Caribbean queen conch Strombus gigas

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Managing translocations of aquatic species

The translocation of aquatic organisms is an issue of increasing concern. In assessing the genetic risks from translocations, a primary distinction should be made between translocation for the purpose of aquaculture and translocation for the purpose of stock enhancement. When translocation is for aquaculture, the question of interest is: what is the maximum level of escapes that should be permitted, beyond which there is an unacceptable probability of adverse genetic effects upon the natural population? Risk minimization should concentrate on management solutions that reduce escapes from aquaculture facilities. When translocation is for stock enhancement, the question of interest is: what is the maximum level of genetic differences between hatchery and wild stock that should be permitted, beyond which there is an unacceptable probability of adverse genetic effects upon the natural population? Risk minimization should concentrate on hatchery management procedures that reduce genetic differences in fitness traits between hatchery stock and wild stock from the proposed recipient population. Where translocation poses a significant risk of adverse genetic changes, then a monitoring programme should be put in place, linked to a policy that prescribes management actions for the range of possible outcomes from the monitoring. The main limitation to our ability to develop an effective risk assessment and monitoring process is our lack of understanding of how the interaction between genetically different stocks affects the genetic basis of quantitative fitness traits that adapt organisms to their local environment.     

Association with Underwater Structures in Hatchery-reared and Wild Red Snapper Lutjanus campechanus Juveniles

Behavioral observations were conducted with red snapper juveniles to improve release strategies for stock enhancement of this species. Association with an underwater structure was compared between hatchery-reared and wild juveniles using video recording. Both hatchery-reared and wild fish tended to stay inside the structure in the daytime and outside it at night. Hatchery-reared fish spent longer periods inside the structure in the daytime, hut showed less association with the structure at night compared to the wild fish. We concluded that association behavior is innate but can be fine-tuned through experience.     

基于微卫星标记对长江江苏段鳙增殖放流效果评估

为评估长江江苏段鳙(Aristichthys nobilis)增殖放流效果,本研究基于微卫星标记的亲子鉴定技术,选用 10对扩增效果稳定的微卫星荧光标记引物,结合毛细管电泳对江苏省内良种场 563 尾鳙亲鱼和长江江苏段 687 尾回捕鳙进行基因分型,并对位点多态性及亲子鉴定结果进行了分析。结果表明,各位点等位基因介于 19~55 之间,其观测杂合度为 0.530~0.909(平均值为 0.748),期望杂合度为 0.818~0.929 (平均值为 0.882),多态性信息含量为0.797~0.924 (平均值为 0.871);Cervus3.0 模拟结果显示,当双亲未知且置信度为 95%时, 10 个微卫星位点的累积非亲权排除率为 99.996%。亲子鉴定结果发现,所有回捕鳙中有 42 尾与亲本之间存在亲子关系,被确认来源于鳙增殖放流群体,并由此推算此次评估亲本的放流子代对长江江苏段野生群体的贡献率为 6.11%。结果显示该研究进行的鳙亲子鉴定技术可为长江鳙增殖放流效果评估工作提供可靠的数据支撑,为长江渔业资源管理提供参考资料。     

Identification of differential broodstock contribution affecting genetic variability in hatchery stocks of Atlantic salmon (Salmo salar)

Supportive breeding of Atlantic salmon (Salmo salar) is commonly employed to maintain numbers of fish where the species has become locally endangered. Increasingly, one of the main aims of population management is the preservation of natural genetic diversity. If the stocks employed in supportive breeding exhibit reduced variation they can alter the natural pattern of genetic variation observed in wild populations. In northern Spain, wild adult salmon are caught every year from local rivers and artificially crossed in order to create supportive stocks. The offspring are hatchery reared until the juvenile stage, then released into the same river where their parents were caught. In the current study, our findings demonstrate that although adult broodstock exhibit a pattern of variation similar to the wild populations, variability at microsatellite loci was drastically reduced in the juveniles released into one of three rivers analyzed. The contribution of broodstock to this juvenile stock was examined by pedigree analysis. A restricted number of females contributing to the hatchery stock was identified as the main cause of loss in genetic variation, possibly due to overmaturity of some multi-sea-winter females. We suggest that better monitoring and control of parental contribution will help in solving the problem of loss of genetic diversity in hatchery populations.     

Pedigree analysis of recaptured fish in the stock enhancement program of spotted halibut Verasper variegatus

ABSTRACT:   Spotted halibut Verasper variegatus hatchery juveniles produced in 2002 were genotyped using three microsatellite DNA markers (msDNA) and then released into natural waters. Subsequently, recaptured individuals were examined using msDNA. In order to evaluate the effectiveness of the stock enhancement program, from the genetic point of view, a pairwise F _ST test was implemented to estimate the genetic divergence between the wild captive broodstock, the hatchery offspring and the recaptured samples. The analysis showed significant differentiation between the broodstock and recaptured samples. Pedigree determination using msDNA was used to calculate the effective population size of the recaptured stock, which was found to be very low ( N _e ≈ 8). Equal family survivability was observed between the two recaptured stocks, but not between the released and recaptured stock. The number of identified families was higher and more equalized in the hatchery offspring compared to the recaptured samples, where the number of families declined. This fact was caused by an unequal family survivability just before or just after release. Separately, the number of contributing parents to the hatchery offspring was lower than the broodstock census number. Consequently, these two facts caused the genetic divergence of the recaptured stock from the broodstock.     

Strategies for enhancement of natural bay scallop, Argopecten irradians irradians, populations; A case study in the Niantic River estuary, Connecticut, USA

We investigated strategies to enhance populations of bay scallops,Argopecten irradians irradians (Lamarck, 1819), in a presumablyrecruitment-limited natural habitat. At present, the Niantic Riverestuary supports only a minor bay scallop population that is harvestedrecreationally. Three enhancement strategies were evaluated; (1)collection and redistribution of natural spatfall, (2) introduction andover-wintering of hatchery-reared stock into natural habitat to providenew spawning stock, and (3) over-wintering of hatchery-reared stock insuspension culture for creation of mobile spawner sanctuaries. Anassessment of natural bay scallop recruitment in the Niantic Riverconducted in 1997 indicated that few spat were found, they were widelydispersed within the river, and peak spawning occurred in late July1997. Direct re-seeding was evaluated as an enhancement measure byplanting hatchery-reared scallops ( 38 mm shell height) insmall-scale, 100-m² plots at different times and densities.Time of planting and the inferred predation intensity were major factorsaffecting survival; whereas, planting density had no significant effect.Approximately 9,000 scallops (35–45 mm shell height), broadcastwithin an eelgrass bed in November 1997, had high over-winter survivaland underwent gametogenesis and spawning during 1998. Of 26,000 bayscallops ( 45 mm shell height) over-wintered in suspensionculture from 1998–1999, approximately 60–80%survived, and these scallops spawned in mobile sanctuaries, during thesummer of 1999. There is good potential for using aquacultural methodsfor enhancement of bay scallop populations when natural recruitment ispoor and habitat and environmental conditions are not limiting.     

Genetic assessment of milkfish (Chanos chanos Forsskal) stocks based on novel short tandem repeats for marker‐aided broodstock management

Milkfish hatchery broodstock are either from on‐grown wild‐caught or hatchery‐produced fry/juveniles. To determine if a marker‐assisted management scheme can be formulated for improved milkfish hatchery production, milkfish stocks were genetically characterized using nine novel short tandem repeats or microsatellites. Eight wild‐bred Philippine stocks (CLA, CUR, CAM, SIH, SBH‐I1, HH, PAL and ZH‐P₀), four hatchery‐bred stocks (SBH‐I2, SBH‐D, BoH and ZH‐F₁), two farm stocks of known mixed lineages (SPH and BDH) and one Indonesian hatchery‐bred stock (WJH) were assessed. WJH was included since milkfish fingerlings from Indonesia reared in Philippine farms could be developed into future broodstock. Mean allelic richness (Ar) was highest in wild‐bred stocks (9.5) and lowest in hatchery‐bred spawners (9.1). Mean expected heterozygosities (He) were relatively similar in all stocks with wild‐bred stocks slightly higher (0.67) than the others. An analysis of molecular variance indicated significant yet low genetic differentiation among stocks (F_ST = 0.013; p = .000) where variation (98.6%) was explained by intra‐stock differences. In some of the domesticated stocks, reductions in mean allelic richness were observed in first generation hatchery broodstock (e.g. ZH‐F₁; Ar = 8.3), compared with their founder stock (e.g. ZH‐P₀; Ar = 9.4). The Indonesian stock was similar to local wild‐bred stocks based on genetic variability indices; thus, it might be likely that the local stocks’ fitness traits could be comparable with the imported milkfish stock which has been perceived to be better. The quality of locally available farmed milkfish and prospects of formulating a broodstock management scheme for the production of good quality milkfish seedstock are herewith discussed.     

Impacts of hatchery release on genetic structure of rock carp <Emphasis Type="Italic">Procypris rabaudi</Emphasis> in the upper Yangtze River,China

Rock carp Procypris rabaudi is a vulnerable endemic fish in the upper Yangtze River. Hatchery release has been carried out as a major stock enhancement strategy for this species. Ten microsatellite loci were chosen to compare genetic variation between one wild population and two hatchery groups to evaluate the potential impacts of hatchery release on the genetic structure of the wild population. Two different models indicated strong evidence of recent bottlenecks in all groups. The hatchery groups were lower in the mean number of alleles per locus, allelic richness, and allelic diversity compared with the wild population. The 80% membership coefficient indicated that 14% of the wild fish could be assigned as hybrids of wild and hatchery fish. Our results suggested that hatchery release will further reduce the natural genetic diversity in the wild population, change the genetic structure of the rock carp population, and may not benefit restoration of this vulnerable fish species.     

Genetic variation in farmed populations of the gilthead sea bream Sparus aurata in Greece using microsatellite DNA markers

Genetic variation in seven reared stocks of gilthead sea bream Sparus aurata, originating from Greek commercial farms, was assessed using five polymorphic microsatellite markers and was compared with that of two natural populations from the Ionian and the Adriatic Seas. The total number of alleles per marker ranged from 11 to 19 alleles, and hatchery samples showed the same levels of observed heterozygosity with samples from the wild but substantially smaller allelic diversity and expected heterozygosity. The global genetic differentiation for the cultivated samples was significant as indicated by F_st analysis, which might indicate random genetic drift and inbreeding events operating in the hatcheries. On the contrary, no significant difference was found between the two wild populations. Population pairwise tests between farmed and wild stocks were also significant, with the exception of one hatchery sample, the Central Greece 1, which was not significantly different from the two wild samples perhaps due to its recent use in aquaculture from wild‐caught animals. The UPGMA tree topology grouped the wild samples together with the Central Greece 1 stock, and showed a clear division between wild and farmed sample sets for the six remaining hatchery samples. Knowledge of the genetic variation in S. aurata cultured populations compared with that in the wild ones is essential for setting up appropriate guidelines for the proper monitoring and management of the stocks either under traditional practices or for the implementation of selective breeding programmes.     

Deformity of agglutinated pelvic fin membrane in hatchery-reared black rockfish Sebastes inermis and its application for stock separation study

ABSTRACT:   This study is the first to report on the high occurrence of agglutinated pelvic fin membrane deformities in hatchery-reared black rockfish Sebastes inermis . For 5 years, this symptom was marked in hatchery-reared fish, with 58.7% of fish deformed on average (varying between 46.7 and 72.0%). The deformity was a peculiarity in hatchery-reared fish, but is negated in wild fish, and was not related to whether the fish broodstock originated from the wild or from a hatchery. Mark–release experiments showed that deformed fish were almost the same as normal hatchery-reared fish in growth and survival rates, and, theoretically, the recapture numbers of hatchery-stocked fish, estimated by deformity, almost coincided with actual recapture numbers, confirmed by otolith tagging. The results of the present study indicate that deformity in hatchery-reared black rockfish is useful as a stock separation tool.     

Comparison of the distribution and homing of hatchery-reared and wild Atlantic salmon,Salmo salar L., from north-east England

Hatchery-reared Atlantic salmon, Salmo salar L., parr and wild smolts which were microtagged and released into rivers in north-east England were recaptured by the fisheries at West Greenland, Faroes and on the Irish west coast, by the homewater net fisheries and by rod fisheries in rivers in north-east England. No significant differences were observed in the patterns of exploitation of hatchery-reared and wild fish in the distant water fisheries. The distribution of tag recoveries in coastal waters was strongly influenced by the pattern of fishing effort which was concentrated in the middle of the fishery area, but recaptures tended to be biased towards the river of release. There were significant differences in the distribution of recaptures of fish released in different rivers and between hatchery-reared and wild fish from the River Wear. There were also differences in the timing of recaptures of hatchery and wild fish from this river in the coastal net fishery. Very few fish were recaptured in rivers other than the one in which they were released, and there was no significant difference between straying rates for hatchery and wild fish. The relative numbers of recaptures in the coastal fishery and in the home river was the same for translocated hatchery fish and wild fish, thus refuting the suggestion that hatchery-reared fish have a reduced ability to home. The distribution of recaptures within fresh water provides clear evidence of tributary-specific homing of hatchery-reared fish.     

Shell strength of queen conch, Strombus gigas L.: aquaculture implications

Abstract. Forces required to crack shells of a wild population of queen conchs, Strombus gigas L., from the Berry Islands. Bahamas and from three hatchery populations in Venezuela, the United States and Mexico were measured. Above about 55-mm shell length, shell strength of wild conchs increased rapidly for small length increases. To reduce the effect of predation by crustaceans in seeding programmes we recommend release into nature at sizes larger than 55 mm. The regressions of shell length to cracking force of hatchery-reared conchs from the wild population and the hatcheries differed significantly in slope or elevation, suggesting different shell lengths of conchs from different geographic locations, and between hatcheries.     

Migration performance of wild and hatchery sea trout (Salmo trutta L.) smolts—Implications for compensatory hatchery programs

Migration success of hatchery-reared and wild sea trout smolts through the lower stretches and the estuary of a Baltic Sea river were studied. During 3 years, wild and hatchery trout smolts were implanted with acoustic transmitters and released 14 km upstream from the river mouth. In order to monitor their out-migration pattern, acoustic receivers were deployed along the migratory route. Data on number of fish detected and date and time of detections were analysed and the migratory performance of wild and hatchery-reared fish was compared. A significantly higher proportion of wild fish (80%) successfully migrated to the coast compared to fish of hatchery origin (27.5%) and migration was faster in wild smolts. Hatchery fish were larger and had a higher condition factor and lipid concentrations, which are proposed as possible reasons for the poorer migratory performance of the hatchery-reared fish.     

Erosion of the native genetic resources of brown trout in Spain

Abstract– We analyzed the introduction of hatchery-reared trout in the Riutort Creek, a small stream in the eastern Spanish Pyrennees. We used gene correlation matrices between individuals to analyze the fish coancestry in the Riutort Creek samples and in the hatchery stock. Hatchery fish disturbed the single ancestry in the native population of the creek, and were clearly detected with principal coordinate analysis of the gene correlation matrix. The amount of introgression produced by successful introductions was estimated from the principal coordinate analysis projections of the matrix of F_ST values between the putative native Riutort Creek population, the hatchery stock and the introgressed population. In only two years the amount of introgression rose to 10%, indicating that 5% of the native ancestry is lost each year as a result of the stocking program. Based on these results, we review the present understandings on the genetic impact of hatchery fish on indigenous Spanish brown trout populations. The stocking of these populations involves a non-native broodstock widespread through the Spanish hatcheries, but successful stockings appear to be limited to wild populations subjected to occasional releases in protected or unfished areas. Surprisingly, extensive stocking in fished areas result in a more limited genetic impact on the recipient native population.     

Genetic variation of hatchery and wild stocks of the pearl oyster <Emphasis Type="Italic">Pinctada fucata martensii</Emphasis> (Dunker, 1872), assessed by mitochondrial DNA analysis

In order to provide baseline information for the genetic resources, genetic variation in wild and cultured Pinctada fucata martensii from southern Korea and Japan was studied using nucleotide sequence analysis of 379 base pairs (bp) in the mitochondrial cytochrome oxidase subunit I gene (COI). The study included three hatchery stocks from Korea (Tongyeong) and Japan (Mie and Tsushima) and one wild stock from Korea (Geoje). A total of 3 haplotypes were identified in hatchery stocks of 78 individuals, of which 63 individuals shared 1 haplotype. Overall, nucleotide diversity (π) was low, ranging from 0.000 to 0.002, and haplotype diversity (h) ranged from 0.000 to 0.541. Considerably low haplotype and nucleotide diversities in hatchery stock indicated that low effective population size and consecutive selective breeding of P. fucata martensii could be responsible for the reduction in genetic variation. The wild stock exhibited low haplotype diversity (0.507 ± 0.039) with two shared haplotypes. The results of the present study with first record of wild pearl oyster in Korea support the possibility that the transplanted pearl oyster for overwintering experiments could have survived in winter. In order to enhance and/or maintain genetic diversity in the hatchery stock, further research should be directed toward genetic monitoring and evaluation of the hatchery and wild pearl oysters.     

The enhancement of abalone stocks: lessons from Japanese case studies

The dramatic declines in abalone Haliotis spp. fishery production have been documented all over the world. Release of hatchery‐reared juveniles into natural habitats has been considered as one measure to sustain and/or augment the current fishery production of abalone, as well as to restore collapsed abalone stocks. However, attempts at abalone release programmes have only been undertaken at experimental scales, except for Japan, where large‐scale stock enhancement programmes for abalone have been undertaken since late 1960s. To evaluate the potential of stock enhancement for abalone, we analysed the release surveys of 13 case studies in Japan in terms of the overall recapture rate (number of recaptures through a lifetime/number of juveniles released), yield per release (YPR, yields from released individuals), the economic efficiency of releases (ratio of income from recaptured abalone to release cost) for each release year, and the contribution of hatchery releases to total catches for each fishing year. The average estimates for overall recapture rates (0.014–0.238) and YPR (3.1–60.3 g/individual) varied between locations and release years. The economic efficiency was estimated at 0.4–6.2. The released abalone contributed 6.9–83.5% to total catches. Hatchery releases could augment total production at some locations, but the success of release programmes would be limited by the carrying capacity at release areas, because density‐dependent mortality occurred following releases in some cases. Throughout Japan, the annual catch of abalone has continuously declined from ～6500 t in 1970 to ～2000 t in the mid‐1990s, despite the increase in the number of hatchery releases. Based on the estimates for YPR, the magnitude of the abalone releases on a national scale has not been sufficiently large to sustain the total production of Japanese abalone, which has primarily fluctuated according to the abundances of wild populations. Our results suggest that releases should be targeted at local populations in regions where stock enhancement is predicted to have the greatest chance of success, and the magnitude of releases should be considered carefully and determined for each region by taking the local carrying capacity into account. We also address the future prospects of abalone stock enhancement.