猪细环病毒2型环介导等温扩增检测方法的建立

为了能快速、特异的检测猪细环病毒2型(TTSuV2),本研究针对TTSuV2全基因序列的非编码区域和第1个开放性阅读框前端设计了2对引物,建立了TTSuV2的环介导等温扩增(LAMP)检测方法并对反应成分和条件进行了梯度摸索。试验结果显示,该LAMP检测方法最佳反应条件为64 ℃恒温90 min,可特异性检测TTSuV2,与猪细环病毒1型、猪圆环病毒2型、猪瘟病毒、猪繁殖与呼吸综合征病毒和猪博卡病毒无交叉反应,病毒最低检出限为100拷贝/μL。结果表明,建立的LAMP方法具有快速、特异且灵敏的特点,可在TTSuV2快速检测方面提供一定的技术支持。     

Establishment and Application of Loop-mediated Isothermal Amplification for Rapid Detection of Porcine Epidemic Diarrhea Virus

This study was aimed to establish a loop-mediated isothermal amplification (LAMP) assay for detection of porcine epidemic diarrhea virus (PEDV), and provide a simple, sensitive, accurate and reliable tool for diagnosis of PEDV.The conservative PEDV N gene (GenBank accession number: KT799997) of PEDV was selected as a target to design six specific primers.The reaction system and temperature of LAMP were optimized, and the LAMP method for specific amplification of PEDV was established. Results showed that the PEDV LAMP detection method was established successfully, and it could detect PEDV specifically at 60℃ for 60 min,and the detection limit was 91 copies/μL, which was one hundred-fold higher than conventional RT-PCR method.75 clinical samples were detected by LAMP and PCR, respectively, the coincidence of LAMP and PCR was about 97.3%. All the data suggested that the LAMP assay had strong specificity, high sensitivity, simple operation, low equipment requirement, and was suitable for rapid detection of PEDV clinical samples.     

猪流行性腹泻病毒环介导等温扩增检测方法的建立及应用

试验旨在建立一种快速检测猪流行性腹泻病毒（PEDV）的环介导等温扩增方法（LAMP）,为诊断PEDV提供简便、敏感、准确可靠的工具。参考GenBank中PEDV基因序列（登录号：KT799997）,针对PEDVN基因设计了6条引物,对所建立的LAMP反应体系、反应温度进行优化,建立可特异性扩增PEDV的LAMP方法。结果显示,本试验成功建立了PEDV LAMP检测方法,在60℃恒温下反应60 min,能特异性地检测PEDV,检测限量为91拷贝/μL,比常规PCR方法的敏感性高100倍。对比75份临床样本的LAMP和常规RT-PCR法检测结果,显示两种方法符合率为97.3%。综上所述,本试验建立的LAMP方法具有特异性强、敏感性高,操作简单,设备要求低的特点,适用于PEDV临床样本的快速检测。     

肠炎沙门菌LAMP检测方法的建立

为建立一种能快速检测肠炎沙门菌(SE)的方法,本研究根据基因库中SE种特异性基因(sdfⅠ)的保守序列,设计一套特异性环介导等温扩增(LAMP)引物,建立了SE的LAMP可视化检测方法。该方法的敏感性可达100fg DNA,高于常规PCR方法100倍;全部反应可在1h内完成;可通过肉眼观察颜色直接判定结果;对其他常见病原体的检测结果均为阴性。结果表明建立的LAMP方法简便、快速、灵敏、特异,可用于SE感染的快速检测。     

鸡毒支原体LAMP可视化检测方法的建立

为建立一种鸡毒支原体(MG)的快速检测方法,本研究根据GenBank中MG的基因保守序列,设计1套特异性环介导等温扩增(LAMP)引物,优化反应条件,建立了MG LAMP的可视化检测方法。该方法的敏感性可达10 fg/μL,高于常规PCR方法100倍;其特异性好,对其他的鸡常见病原体的检测结果均为阴性。MG LAMP反应只需一个可控温的水浴锅,在1 h内完成全部反应,通过肉眼观察颜色直接判定结果。本研究建立的LAMP方法具有灵敏度高、特异性好、操作简便的优点,可用于MG感染的快速检测。     

鸡传染性贫血病毒病LAMP快速可视化检测方法的建立

为建立一种能快速检测鸡传染性贫血病毒病（CIAV）的检测方法,根据基因库中鸡传染性贫血病毒病的保守序列,设计一套特异性环介导等温扩增（LAMP）引物,建立了CIAV的LAMP可视化检测方法。该法敏感性可迭10fg,高于常规PCR方法10倍;全部反应可在1h内完成;可通过肉眼观察颜色直接判定结果;对其它鸡常见病原体的检测结果均为阴性。结果表明建立的LAMP方法简便、快速、灵敏、特异,可用于CIAV感染的快速检测。     

快速检测双芽巴贝斯虫LAMP方法的建立

为提高双芽巴贝斯虫(Babesia bigemina)检出率,本研究采用环介导等温扩增技术(LAMP)建立一种快速、灵敏、特异的B.bigemina检测方法。根据GenBank上公布的Babesia bigemina细胞色素b(Cytochrome b,cyt b)基因序列,设计4条特异地识别B.bigemina的cyt b基因6个特殊区域的LAMP引物,优化反应体系和条件,在Bst DNA聚合酶的作用下,65 ℃反应60 min,加入SYBR Green Ⅰ后观察。结果表明,该LAMP检测方法特异性强,与牛巴贝斯虫(Babesia bovis)等DNA不发生交叉反应;敏感性高,对B.bigemina的cyt b基因最小检测值为0.085 fg/μL,是一般PCR方法的1000倍。该方法具有简单、快速、低成本的特点,可用于B.bigemina的基层现场快速检测。     

实验猴粪便样品中沙门氏菌LAMP检测方法的建立及应用简

A loop-mediated isothermal amplification (LAMP) assay was developed for detection of Salmonlla in fecal samples of experimental monkeys. According to the specific sequences (fimY) of Salmonlla in GenBank, one set of primers was selected and the reaction condition was optimized. The results showed that the detection limit of LAMP method was 1.35×10¹ and 1.35×10³ CFU/mL in Salmonella pure culture and clinical samples,respectively,which was the same as routine PCR. The amplification could complete in one hour, and the result could be distinguished by naked eyes. There was non-specific amplification of other pathogens. These results suggested that this LAMP assay was a simple and specific method for rapid detection of Salmonlla in fecal samples.     

马疱疹病毒1型LAMP检测方法的建立

本试验旨在建立一种检测马疱疹病毒1型（EHV-1）的快速、灵敏、特异的环介导等温扩增技术（LAMP）,同时评价该方法的可靠性。根据马鼻肺炎糖蛋白B（gB）基因特异保守序列设计多对LAMP引物,利用LAMP Real Time Turbidimeter LA-320仪监测反应进程,进行引物筛选和反应条件的优化,建立能特异性扩增EHV-1 DNA的LAMP检测方法,并加入SYBR GreenⅠ通过肉眼判断结果。该方法在65 ℃恒温下作用50 min,使EHV-1 DNA获得了高效率的特异性扩增,与其他马易感病毒如马疱疹病毒4型（EHV-4）等无交叉反应;且具有极高的灵敏性,可检测到10^-4稀释的目标病毒,比普通PCR的灵敏度高10倍;反应结束后加入SYBR GreenⅠ肉眼观察的结果与LAMP Real Time Turbidimeter LA-320仪监测结果一致。通过将4份临床样品的LAMP检测结果与已得到验证的PCR结果进行比对,结果显示符合率为100%。本研究建立的LAMP检测方法具有快速、特异、灵敏、简单易操作且设备要求低等特点,具有实地检测EHV-1的前景。     

鸭圆环病毒LAMP可视化检测方法的建立

根据GenBank中DuCV基因序列,在保守区设计了6条特异性引物,并对反应条件进行优化,建立了一种适用于鸭圆环病毒（DuCV）的环介导等温扩增快速检测方法（LAMP）。该方法对H9亚型禽流感、小鹅瘟、鸭瘟、鸭肝炎、鸭副黏病毒均无扩增反应;且扩增反应只需在常规水浴锅中进行,1小时内即可完成反应;对DuCV模版DNA的最小检测限为10龟,灵敏度是一步法PCR的1000倍。本研究建立的LAMP方法简便、快速、灵敏、特异,适合在基层进行DuCV的快速检测。     

Establishment of Duplex Loop-mediated Isothermal Amplification Method for Simultaneous Detection of Shellfish Infected with Perkinsus and Bonamia

In order to establish a duplex loop-mediated isothermal amplification (LAMP) method for the detection of shellfish parasitic infection with Perkinsus and Bonamia, primers were designed according to the conserved region of ITS and 18S rRNA gene sequences of Perkinsus and Bonamia deposited in GenBank using the online Primer Explorer 4.0.Firstly, the respective single LAMP detection assay of two parasites were developed, and then the reaction conditions were optimized by combining the two reaction systems into duplex LAMP method.The specificity and sensitivity of duplex LAMP method were examined and the confidence was evaluated by digesting the amplicons with respective endonuclease.The results showed that the established duplex LAMP method was specific enough to distinguish the two parasites from other parasites, and the detection limit of Perkinsus was 10 copies/μL plasmid DNA, the detection limit of Bonamia was 100 copies/μL plasmid DNA.The endonuclease digestion of duplex LAMP products certified the confidence of the established duplex LAMP method.The detection result of 20 Ruditapes philippinarum samples collected randomly from the East China sea and Yellow sea and 10 Ostrea edulis samples imported from USA showed that the duplex LAMP method could be used as a rapid detection method for infection with Perkinsus and Bonamia.     

同时检测贝类派琴虫和包纳米虫的双重LAMP方法的建立

为满足贝类寄生虫快速检测需求,本研究根据GenBank中发布的派琴虫ITS序列和包纳米虫18S rRNA序列的保守区域分别设计LAMP扩增引物,分别建立了两种寄生虫的单重LAMP检测方法,进一步对反应体系进行优化,组装成两种寄生虫的双重LAMP方法,同时还进行了特异性检测和敏感性检测,并通过对扩增产物进行限制性内切酶酶切检验双重LAMP方法的准确性。结果表明本研究建立的贝类寄生虫双重LAMP方法具有较好的特异性,检测派琴虫时的最低检测限为10拷贝/μL质粒DNA,检测包纳米虫时的最低检测限为100拷贝/μL质粒DNA,同时酶切试验也验证了双重LAMP检测结果的准确性。对随机采自东海和黄海的20份菲律宾蛤仔和10份美国进口牡蛎的检测结果显示,该双重LAMP方法在口岸检疫工作中可以作为派琴虫和包纳米虫的快速检测方法。     

Establishment and Application of LAMP Detection Method of Bovine Viral Diarrhea Virus

Since the 5'UTR gene (GenBank No.:AY278459.1) had 4 isolated regions,we designed a set of 4 LAMP primers to specifically recognize target gene sequences.This study developed a loop-mediated isothermal amplification (LAMP) method for detecting BVDV,using the pyrophosphate magnesium white precipitate for Real-time detection in LAMP reaction process of turbidity instrument,Real-time monitor liquid turbidity to determine result.The whole reaction lasted only 50 minutes at a constructed temperature of 63 ℃ to evaluate specificity,sensibility and repeatability of the method.The result demonstrated that the LAMP assay could only react with BVDV,its specificity was high;It could detect at least 10^-6-fold diluted samples,which was 100 more sensitive than PCR assay;And repeatability was good.The simple,rapid,high siensitivity and specificity LAMP assay was a potential tool for the detection of BVDV in field conditions.     

牛病毒性腹泻病毒LAMP检测方法的建立与应用

针对牛病毒性腹泻病毒(BVDV) 5'UTR基因(GenBank登录号:AY278459.1)序列设计4条特异性环介导等温扩增 (LAMP) 引物,特异性识别靶基因序列上4个独立区域,采用LAMP技术,利用实时浊度仪实时检测LAMP 反应过程中所产生的焦磷酸镁白色沉淀,实时监测反应液浊度来判断反应结果,实现对扩增反应全过程的监控,建立BVDV的LAMP快速检测方法。通过实时浊度仪在恒温63 ℃下50 min完成检测,对方法的特异性、灵敏度、重复性进行了评价。结果显示,经优化该方法只检测BVDV阳性,特异性强;病毒10^-6倍稀释时仍能被检测到,比PCR方法灵敏度至少高100倍;重复性良好。LAMP实时浊度法具有简单、快速、灵敏度高、特异性强的优势,为BVDV的临床检测提供了一种简单快速的试验手段。     

3种新城疫病毒核酸扩增检测方法的比较研究

本研究利用3种方法对新城疫病毒(Newcastle disease virus,NDV)进行检测,并对这3种检测方法的灵敏度和特异性作出比较。根据新城疫病毒的融合蛋白基因(F基因)设计合成6条特异性引物,利用水浴LAMP法、PCR及LAMP实时浊度仪进行检测。通过对恒温水浴中的反应温度、反应时间及反应液中Mg^2＋浓度进行优化获得最佳反应条件,结果用凝胶电泳分析;用优化的温度进行LAMP实时浊度仪检测,同时都与PCR方法进行比较。结果显示,获得了最佳反应条件,水浴LAMP方法最低检测限是1.58 pg,比PCR高100倍,而LAMP实时浊度仪检测灵敏度比水浴LAMP方法高10倍,最低检测限是0.158 pg。3种方法对其他非新城疫病毒均无检出。结果表明,新城疫病毒水浴LAMP检测方法速度快、不需要高精密的仪器,而且具有灵敏度高、特异性强、操作简单等特点,有望在核酸扩增领域取代PCR技术,LAMP浊度仪法检测灵敏度更高,但是所需仪器和试剂比较昂贵。     

Rapid detection of group I avian adenoviruses by a loop-mediated isothermal amplification

A loop-mediated isothermal amplification (LAMP) assay was optimized for the rapid detection of Group I avian adenoviruses. A set of six primers was designed from the DNA sequences of hexon genes from Group I avian adenovirus. The assay was performed in a water bath for 60 min at 63 C, and the amplification result was visualized by adding a fluorescence dye reagent or by inspecting the white sediment. The results showed that the LAMP assay could detect all 12 serotypes of Group I avian adenovirus and nine Guangxi Group I avian adenovirus isolates. This avian adenovirus Group I-specific LAMP assay could detect 238 copies of avian adenovirus. No cross-reactions were detected using the LAMP assay with avian adenoviruses type II and III or with other avian viruses. The ability of LAMP to detect Group I avian adenovirus isolates was further evaluated with 184 cloacal swab samples from poultry. In total, 72 out of 184 cloacal swab samples from poultry were identified as positive by LAMP, whereas 45 out of 184 were identified as positive by conventional PCR test. The Group I avian adenovirus specific LAMP results were further confirmed by real-time PCR. This specific LAMP method holds promise as a rapid and specific diagnostic assay for detection of samples from birds suspected of adenovirus infection.     

肝螺杆菌LAMP快速检测方法的建立及初步应用

根据肝螺杆菌fla B基因保守区域设计一组特异性引物,经过条件优化、特异性和敏感性分析,成功建立了肝螺杆菌LAMP快速检测方法。结果显示,建立的LAMP扩增方法仅能检测出肝螺杆菌,其他常见细菌未见特异性扩增。检出肝螺杆菌最低模板量为86.9fg/L,是普通PCR所需模板量的1/10。本研究建立的LAMP快速检测方法具备操作简单、特异性好、灵敏度高的优点,结果易于观察,对仪器设备要求低,适宜推广应用。     

牛副结核分枝杆菌LAMP快速检测方法的建立

为建立牛副结核分枝杆菌(MAP)的快速检测方法,本研究采用环介导等温扩增(LAMP)技术,以MAP的IS900基因序列为靶基因设计特异性引物,建立了MAP特异性的LAMP快速检测方法。经反应条件优化,检测结果显示,建立的LAMP检测方法具有良好的特异性,最低见测量为0.53 pg;与其他病原菌无任何交叉反应。临床样品检测与行业标准的符合率为100%。该LAMP检测方法可以用于MAP的常规检疫。     

贝类折光马尔太虫LAMP可视化检测方法的建立

根据折光马尔太虫的基因保守序列设计了1套特异性环介导等温扩增（LAMP）引物,建立了折光马尔太虫LAMP可视化检测方法。该方法全部反应可在1h内完成;可通过肉眼观察颜色直接判定结果;检测的灵感性可达20fg,高于常规PCR方法100倍;对其他贝类常见病原体的检测结果均为阴性。结果表明,所建立的折光马尔太虫LAMP检测方法简便、快速、灵敏、特异,可用于贝类折光马尔太虫感染的快速检测。     

牛附红细胞体LAMP检测方法的建立

为建立一种快捷、灵敏的牛附红细胞体检测方法,本研究根据GenBank上发表的16S rRNA基因(登录号:AF016546)序列设计合成2对LAMP特异引物,建立了检测牛附红细胞体环介导等温扩增(LAMP)方法,并优化了LAMP的各反应条件,进行了敏感性和特异性试验。LAMP扩增产物经电泳、显色鉴定。结果显示,LAMP方法扩增牛附红细胞体产物呈特征性梯状条带,显色反应呈现绿色荧光;敏感性检测最低浓度为25.6 fg/μL;特异性试验结果显示,牛附红细胞体检测管显色后呈阳性,而猪附红细胞体、牛新孢子虫、弓形虫及牛瑟氏泰勒虫等对照组均呈阴性,说明本研究建立的LAMP方法具有灵敏、特异、快速等优点,适合于牛附红细胞体的检测。