Can root exudate components influence the availability of pyrene in soil?

Purpose

Little information is currently available regarding the influence of different root exudate components (RECs) on the availability of persistent organic pollutants in the soil environment. In this study, we investigated the impacts of different RECs including organic acids, amino acids, and fructose on the availability of pyrene as a representative polycyclic aromatic hydrocarbon (PAH) in soils.

Materials and methods

Citric acid, oxalic acid, malic acid, serine, alanine, and fructose were used in the experiments as representative RECs. Pyrene-spiked soils (TypicPaleudalfs) with present RECs were incubated for 30 days, and the available fraction of pyrene was determined using n-butanol extraction procedure.

Results and discussion

The amount of n-butanol-extractable pyrene in soil increased with the addition of tested RECs and increased when REC concentrations are enhanced within the range of 0–21 g kg^?1. The extractability of pyrene in soil with REC treatments and the enhancement ratio (r, %) of the extractable pyrene in soil by the addition of RECs after a 30-day incubation decreased in the following order: organic acids (oxalic acid ≥ citric acid > malic acid) > amino acid (alanine > serine) > fructose. This decrease was observed irrespective of soil sterilization, although the concentrations of extractable pyrene were lower in non-sterilized soils compared to sterilized soils. The concentrations of metal cations and dissolved organic matter (DOM) in solution increased when organic acids were added.

Conclusions

The tested RECs at concentrations of 0–21 g kg^?1 clearly enhanced the availability of pyrene in soils, and larger amounts of RECs resulted in higher pyrene availabilities in the tested soils. Microbial biodegradation diminished the amount of available pyrene irrespective of the presence of RECs. The mechanism of REC-influenced availability of pyrene in soil may be related to the metal dissolution and release of DOM from soil solids. The results of this study will be useful in assessing PAH-related risks to human health and the environment and will be instructive in food safety and remediation strategies at contaminated sites.     

Extreme pollution of soils by emissions of the copper–nickel industrial complex in the Kola Peninsula

The distribution of the total Ni, Cu, Co, Cd, Pb, and Zn contents was studied in the soil profiles of six catenas in the zone subjected to emissions of the copper-nickel industrial complex, which is the largest source of SO₂ and heavy metals in northern Europe. The results show that, at present, the concentrations of Ni and Cu in the upper organic soil horizons in the impact zone reach extreme levels of 9000 and 6000 mg/kg, respectively. Under conditions of the long-term intense multi-element industrial emissions, the modern levels of the accumulation of polluting substances in soils greatly depend on the indirect factors, such as the degree of the technogenic degradation of soils with the loss of a significant part of soil organic matter, the reaching of threshold saturation of the topsoil with polluting metals, and competitive relationships between chemical elements. The state of the ecosystems in the impact zone varied greatly and did not always agree with the contents of the main metals-pollutants in the soils. The moisture conditions determined by the landscape position affected significantly the resistance of the ecosystems to emissions.     

Potassium status of some selected soils under different land‐use systems in the subhumid zone of Nigeria

Abstract

Twenty surface soils (0 to 15 cm), selected to represent a wide range of available potassium (K) status and three different land‐use systems (fodder bank, continuously fertilized cropped land and fallow land) across the subhumid zone of Nigeria, were used for the investigation. Laboratory and greenhouse studies were carried out to assess their K status. Available, non‐exchangeable, and total K were determined. The supplying power of the soils was assessed by exhaustive cropping in the greenhouse using Stylosanthes hamata cv. Verano as the indicator plant. While 75% of fodder banks sampled had available K less than 0.20 cmol/kg, only 50% and 13% of continuously fertilized cropped and fallow lands, respectively, had available K less than 0.20 cmol/kg. Potassium weathering coefficient was highest at the lowest exchangeable K and highest [calcium (Ca) + magnesium (Mg)]/K ratio. Total K ranged from 2.30 to 47.06 cmol/kg, with available K forming 1.47% of the total K. The amount of non‐exchangeable K released and taken up by stylo plant accounted for 23.3 to 83.6% of the total K uptake.     

The effect of concentrations and properties of phenanthrene, pyrene, and benzo(a)pyrene on desorption in contaminated soil aged for 1 year

Purpose

The choice and timing of microorganisms added to soils for bioremediation is affected by the dominant bioavailable contaminants in the soil. However, changes to the concentration of bioavailable PAHs in soil are not clear, especially when several PAHs coexist. This study investigated the effects of PAH concentration and chemical properties on desorption in meadow brown soil after a 1-year aging period, which could reflect changes of PAH bioavailability during bioremediation.

Materials and methods

Based on the percentage of different molecular weights in a field investigation, high-level contaminated soil (HCS) and low-level contaminated soil (LCS) were prepared by adding phenanthrene (PHE), pyrene (PYR) and benzo(a)pyrene (BaP) to uncontaminated meadow brown soil. The concentrations of HCS and LCS were 250 mg?kg^?1 (PHE, PYR, and BaP: 100, 100, and 50 mg?kg^?1) and 50 mg?kg^?1 (PHE, PYR, and BaP: 20, 20, and 10 mg?kg^?1) respectively. The soils were aged for 1 year, after which desorption was induced by means of a XAD-2 adsorption technique over a 96-h period.

Results and discussion

The range of the rapidly desorbing fraction (F _rap) for PHE, PYR, and BaP in HCS and LCS was from 1.9 to 27.8 %. In HCS, desorption of PYR was most difficult, and the rate constant of very slow desorption (K _vs) of PYR was 8 orders of magnitude lower than that of BaP, which had similar very slow desorbing fractions (49.8 and 50.5 %, respectively). However, in LCS, desorption of PYR was the easiest; the K_vs of PYR was 8–10 orders of magnitude higher than those of PHE and BaP. In HCS, the time scale for release of 50 % of the PAHs was ranked as BaP?>?PYR?>?PHE, while in LCS this was BaP?>?PHE?>?PYR.

Conclusions

The combined effect of PAH concentrations and properties should be taken into account during desorption. The desorption of PAH did not always decrease with increasing molecular weight, and the desorption of four-ring PAHs might be special. These results are useful for screening biodegrading microbes and determining when they should be added to soils based on the dominant contaminants present during different periods, thus improving the efficiency of soil bioremediation.     

Formation of volatile organic products in soils under anaerobiosis—I: Metabolism of glucose

A simple trapping procedure for concentration of volatile organic compounds present in a head space and the subsequent analysis of the retained compounds by combined gas chromatographymass spectrometry is described. The procedure was used to study the organic metabolites evolved from various soils when they were amended with glucose and incubated under argon. A number of organic acids, alcohols, aldehydes and esters were evolved during a 4 week period. Less than 10 per cent of the added carbon was recovered as organic compounds, which was largely due to poor recovery of volatile organic acids from soil. Some implications of the observations to microbial ecology are discussed.     

Formation of volatile organic products in soils under anaerobiosis—II: Metabolism of amino acids

Volatile organic compounds generated microbiologically under anaerobic conditions from various soils amended with glucose and amino acids were identified by combined gas chromatographymass spectrometry. Volatile compounds were usually found up to 4 weeks and sometimes longer. Acetaldehyde, acetone, methyl ethyl ketone, methyl propyl ketone, diacetyl, ethanol, n- and iso-propanol, n-, 2- and iso-butanol, acetic acid, butyric acid, ethyl acetate, ethyl butyrate, butyl acetate, butyl butyrate, methane thiol, dimethysulfide, dimethyldisulfide and methyl thioacetate were detected at various time intervals. Volatile organic sulfur compounds were evolved from soils amended with glucose and methionine but not with glucose and cysteine. Volatile nitrogen containing organic compounds were not detected with any of the amended soils.     

Isoelectric focusing of β-glucosidase humic-bound activity in semi-arid Mediterranean soils under management practices

Changes in β-glucosidase enzyme–humic complexes and conventional parameters (pH, total organic C, total N, water-soluble C, and bulk density) were studied in an almond-cropped soil prone to erosion under a rehabilitation practice. The experimental plan included three soil slopes (0%, 2%, and 6%) and two type of fertilization (organic and mineral), with sampling of rhizosphere and inter-row soils. The enzyme humic complexes were extracted by pyrophosphate, purified by ultrafiltration of the organic extracts on molecular mass exclusion membranes (mol wt > 10⁴) and fractionated by isoelectric focusing technique (IEF). The IEF on polyacrylamide rod gels with a restricted pH gradient ranging between 6.0 and 4.0 gave five humic bands on the basis of the little differences of their electric charges (pI). Under both organic and mineral fertilization, β-glucosidase activity bound to the fractionated humic substances, especially in the pH range 4.5–4.2 of the rhizosphere soil, was higher than that of the inter-row soil. This also occurred in 6% slope where the enzyme activity was lower than in soil with lower slopes. The higher number of the β-glucosidase active humic bands in rhizosphere than inter-row soil, particularly for the 0% slope, may be due to the presence of humic molecules capable of preserving the enzyme molecules in the active form, other than to the higher microbial activity synthesizing and releasing the tested enzymes.     

Fate of 15 N-labeled fertilizer in soils under dryland agriculture after 19 years of different fertilizations

This study addressed if long-term combined application of organic manure and inorganic fertilizers could improve the synchrony between nitrogen (N) supply and crop demand. ¹⁵?N-labeled urea was applied to micro-plots within three different fertilized treatments (no fertilizer, No-F soil; inorganic NPK fertilizers, NPK soil; and manure plus inorganic NPK fertilizers, MNPK soil) of a long-term field trial (1990–2009) in a dryland wheat field in the south Loess Plateau, China. After one season of wheat harvest, ¹⁵?N use efficiency was 20, 58, and 65 % in the No-F, NPK, and MNPK soil, respectively. During the early wheat growth stage, microbial immobilization of applied ¹⁵?N was significantly (P?<?0.05) highest in the MNPK soil (15.3 %), higher in the NPK soil (12.6 %), and lowest in the No-F soil (7.4 %). Of the ¹⁵?N immobilized by the soil microbial biomass, 69 % (NPK soil) to 83 % (MNPK soil) was released between the stem elongation and flowering of wheat. Compared with the NPK soil, the MNPK soil had significantly (P?<?0.05) higher grain yield. Our findings highlight that long-term application of organic manure with inorganic fertilizers cannot only improve the synchrony of N supply for crop demand but also increase N use efficiency and grain yield.     

Obtaining empirical equations for the process of formation‐decomposition of FeEDDHA in soils

Abstract

This work is included in a wide field of research on the dynamics of synthetic chelates in calcareous soils of South‐East of Spain. Through the application of Freundlich isotherm to the process of formation‐decomposition of chelate FeEDDHA, equations of type: C_s = A . tⁿ . C^m _o are obtained, where A, n and m, are ctes., C_s, the concentration of iron chelated added to the soil, and t, interaction time of chelate with the soil. In this way we can predict the rhythm of the solution process of Fe in calcareous soils.     

Morphology and properties of the soils of permafrost peatlands in the southeast of the Bol’shezemel’skaya tundra

The morphology and properties of the soils of permafrost peatlands in the southeast of the Bol’shezemel’skaya tundra are characterized. The soils developing in the areas of barren peat circles differ from oligotrophic permafrost-affected peat soils (Cryic Histosols) of vegetated peat mounds in a number of morphological and physicochemical parameters. The soils of barren circles are characterized by the wellstructured surface horizons, relatively low exchangeable acidity, and higher rates of decomposition and humification of organic matter. It is shown that the development of barren peat circles on tops of peat mounds is favored by the activation of erosional and cryogenic processes in the topsoil. The role of winter wind erosion in the destruction of the upper peat and litter horizons is demonstrated. A comparative analysis of the temperature regime of soils of vegetated peat mounds and barren peat circles is presented. The soil–geocryological complex of peat mounds is a system consisting of three major layers: seasonally thawing layer–upper permafrost–underlying permafrost. The upper permafrost horizons of peat mounds at the depth of 50–90 cm are morphologically similar to the underlying permafrost. However, these layers differ in their physicochemical properties, especially in the composition and properties of their organic matter.     

Phytoindication of the water status and nutrient supply of oil-polluted soils in the middle reaches of the Ob’ River

The method of phytoindication of the soil water status and nutrient supply was applied to natural and oil-contaminated soils in the middle reaches of the Ob’ River. These soil characteristics were indirectly assessed using the ecological scales developed by L. G. Ramenskii. On this basis, changes in the soil water status and nutrient supply under the impact of soil contamination with oil and oil products were estimated for the particular soil and landscape conditions     

Agrophysical assessment of alluvial calcareous soils of the Çumra region of Central Anatolia in Turkey

Some physical (density, coefficient of filtration, particle-size composition, etc.) and chemical (contents of carbonates, organic carbon, nitrogen, etc.) properties of an alluvial calcareous soil were studied in Central Anatolia (Konya province, Çumra region). These heavy-textured (medium clay) soils with a low content of organic carbon (less than 1%) have favorable agrophysical properties due to the stable structure of the pore space. The studies of the water regime of soils under drop irrigation confirm the favorable hydrological properties of these soils. The use of the known agrophysical estimates (after Medvedev, the index of the optimal water regime, etc.) has revealed the high dispersal of the data related to the low humus content in these heavy-textured soils. The favorable structure of the pore space is suggested to be stipulated by the active activity of the numerous and diverse representatives of soil biota. Four phyla predominate in the microbio-logical composition of the soils studied; among them, Actinobacteria is the dominant. The composition of this phylum is dominated by the elevated number of both higher (Streptomyces) and lower (three species of Rhodococcus) actinobacteria. The high biodiversity of bacteria against the background of their great total number and the developed trophic interactions in the microbial community promote the well-balanced production of specific metabolites, including gaseous ones (CO₂, H₂). This circumstance allows this clayey soil to function rather actively while protecting the pore space against compaction and maintaining the optimal density, porosity, and hydrological properties.     

Assessment and prediction of changes in the reserves of organic carbon in abandoned soils of European Russia in 1990–2020

Experimental studies and the analysis of published data have shown that carbon reserves in soils generally increase upon soil exclusion from agricultural use. The rate of carbon accumulation in the abandoned soils depends on the soil type, the time elapsed since the soil abandoning (the restoration period), and the thickness of the layer for which the rate of carbon accumulation is determined. For the upper 20-cm-thick layer, it varies from 66 to 175 g C/m² per year in dependence on the type of soil and averages 111 g C/m² per year. The highest rate is typical of the first 10–15 years of soil restoration. According to our calculations, the carbon sequestration in the upper 20-cm-thick layer of Russian soils due to changes in land use was 184–673 Mt C in 1990–2005 and may reach 282–1030 Mt C by 2020.     

How relevant is recalcitrance for the stabilization of organic matter in soils?

Traditionally, the selective preservation of certain recalcitrant organic compounds and the formation of recalcitrant humic substances have been regarded as an important mechanism for soil organic matter (SOM) stabilization. Based on a critical overview of available methods and on results from a cooperative research program, this paper evaluates how relevant recalcitrance is for the long‐term stabilization of SOM or its fractions. Methodologically, recalcitrance is difficult to assess, since the persistence of certain SOM fractions or specific compounds may also be caused by other stabilization mechanisms, such as physical protection or chemical interactions with mineral surfaces. If only free particulate SOM obtained from density fractionation is considered, it rarely reaches ages exceeding 50 y. Older light particles have often been identified as charred plant residues or as fossil C. The degradability of the readily bioavailable dissolved or water‐extractable OM fraction is often negatively correlated with its content in aromatic compounds, which therefore has been associated with recalcitrance. But in subsoils, dissolved organic matter aromaticity and biodegradability both are very low, indicating that other factors or compounds limit its degradation. Among the investigated specific compounds, lignin, lipids, and their derivatives have mean turnover times faster or similar as that of bulk SOM. Only a small fraction of the lignin inputs seems to persist in soils and is mainly found in the fine textural size fraction (<20 µm), indicating physico‐chemical stabilization. Compound‐specific analysis of ¹³C : ¹²C ratios of SOM pyrolysis products in soils with C3‐C4 crop changes revealed no compounds with mean residence times of > 40–50 y, unless fossil C was present in substantial amounts, as at a site exposed to lignite inputs in the past. Here, turnover of pyrolysis products seemed to be much longer, even for those attributed to carbohydrates or proteins. Apparently, fossil C from lignite coal is also utilized by soil organisms, which is further evidenced by low ¹⁴C concentrations in microbial phospholipid fatty acids from this site. Also, black C from charred plant materials was susceptible to microbial degradation in a short‐term (60 d) and a long‐term (2 y) incubation experiment. This degradation was enhanced, when glucose was supplied as an easily available microbial substrate. Similarly, SOM mineralization in many soils generally increased after addition of carbohydrates, amino acids, or simple organic acids, thus indicating that stability may also be caused by substrate limitations. It is concluded that the presented results do not provide much evidence that the selective preservation of recalcitrant primary biogenic compounds is a major SOM‐stabilization mechanism. Old SOM fractions with slow turnover rates were generally only found in association with soil minerals. The only not mineral‐associated SOM components that may be persistent in soils appear to be black and fossil C.     

Input and migration of dissolved organic carbon in soils of forest ecosystems in the subzone of deciduous–coniferous forests

The results of four-year monitoring of natural waters in forest ecosystems of the Zvenigorod Biological Station (Moscow State University, Moscow oblast) show regular changes in the concentrations and fluxes of dissolved organic carbon (DOC) within the atmospheric precipitation–throughfall–soil waters system. Precipitation passing through the tree canopy is enriched with DOC (2–3 and 9–24 mg/L). The average carbon concentration in soil waters reaches 100–110 mg/L in complex spruce and pine–spruce forests and does not exceed 40–60 mg/L in spruce–birch forests.     

Is the decline of soil microbial biomass in late winter coupled to changes in the physical state of cold soils?

During winter when the active layer of Arctic and alpine soils is below 0 °C, soil microbes are alive but metabolizing slowly, presumably in contact with unfrozen water. This unfrozen water is at the same negative chemical potential as the ice. While both the hydrostatic and the osmotic components of the chemical potential will contribute to this negative value, we argue that the osmotic component (osmotic potential) is the significant contributor. Hence, the soil microorganisms need to be at least halotolerant and psychrotolerant to survive in seasonally frozen soils. The low osmotic potential of unfrozen soil water will lead to the withdrawal of cell water, unless balanced by accumulation of compatible solutes. Many microbes appear to survive this dehydration, since microbial biomass in some situations is high, and rising, in winter. In late winter however, before the soil temperature rises above zero, there can be a considerable decline in soil microbial biomass due to the loss of compatible solutes from viable cells or to cell rupture. This decline may be caused by changes in the physical state of the system, specifically by sudden fluxes of melt water down channels in frozen soil, rapidly raising the chemical potential. The dehydrated cells may be unable to accommodate a rapid rise in osmotic potential so that cell membranes rupture and cells lyse. The exhaustion of soluble substrates released from senescing plant and microbial tissues in autumn and winter may also limit microbial growth, while in addition the rising temperatures may terminate a winter bloom of psychrophiles.Climate change is predicted to cause a decline in plant production in these northern soils, due to summer drought and to an increase in freeze-thaw cycles. Both of these may be expected to reduce soil microbial biomass in late winter. After lysis of microbial cells this biomass provides nutrients for plant growth in early spring. These feedbacks, in turn, could affect herbivory and production at higher trophic levels.     

Is soil water repellency a function of soil order and proneness to drought? A survey of soils under pasture in the North Island of New Zealand

We conducted a survey of the occurrence of soil water repellency (SWR) in the top 40 mm of soils across 50 sites under pastoral land use in the North Island of New Zealand. The sites represented ten soil orders and covered five classes of proneness to drought. We found at least a moderate persistence of SWR in 35 out of 50 sites (70%) in summer 2009/2010 and a moderate potential persistence of SWR in 49 out of 50 sites (98%) after drying the soils. The soil orders had an influence on the degree and persistence of SWR. Both the degree and persistence of SWR were greatest for the soil orders Podzol, Organic and Recent, and least for the soil order Allophanic. On average, all soil orders had contact angles larger than 94°, with the exception of the soil order Allophanic. We found no relationship between SWR and drought‐proneness. The degree of SWR and its persistence for air‐dried samples were positively correlated with soil carbon and nitrogen contents and negatively with soil bulk density. The persistence of SWR for field‐fresh samples was additionally negatively correlated with the soil water content. We identified a close relationship (R² = 0.84) between the degree and persistence of SWR. The survey results indicate that SWR is at least moderately persistent in a soil with a contact angle larger than 93.8°. Using a water‐drop penetration time of 60 s as the threshold for SWR being moderately persistent, we found that moderately persistent SWR occurred only for volumetric water contents below 45% or a relative saturation of 60%. The latter can be considered to be a generic value of the critical water content for the onset of SWR at the scale of the North Island of New Zealand.     

The content of microelements and iron in soils and plants in the basin of lake Kotokel’ in Western Transbaikalia

The content of microelements (Mn, Zn, Cu, Co, Ni, Cr, Pb, and Cd) and Fe is determined in the soils and plants of the Lake Kotokel’ basin. Their content in the soils is proved not to exceed the regional background and the existing MPC and APC. The content of Cd is revealed to exceed its clarke value for the world soils, which is related to the natural origin of this element. The concentrations of Mn, Co, and Pb are close to their clarke values, and those of Zn, Cu, Ni, and Cr are lower than their clarkes. The studied soils are specified by the maximal amount of the mobile forms of microelements. The profile distribution of the microelements differs depending on the genetic soil type. For Mn, Zn, and Cu, a significant biogenic accumulation is pronounced in the organic soil horizons. The content of microelements in the aboveground phytomass exceeds the maximal permissible levels for Mn, Co, Cr, and Fe. The intensity of the microelements absorption by the plants varies widely, being specified by the high coefficient of the biological adsorption (except for Fe). Mn, Zn, and Cu are accumulated in the plant phytomass the most intensely.     

Use of geophysical methods for the study of sandy soils under Campinarana at the National Park of Viruá, Roraima state,Brazilian Amazonia

Purpose

The vegetation of the Campinaranas occurs in humid areas with hydromorphic sandy soils at the Amazon region. Thus, the determination and in situ monitoring of moisture content in Campinarana soils, besides the detection of subsurface layers are key measures for studying these soil–vegetation systems. Also, the application of ground penetrating radar (GPR) in deep sandy sedimentary sequence of Amazonia is a promising tool to enhance the knowledge on depositional and soil formation features.

Materials and methods

We studied representative soils of the Campinaranas at the National Park of Viruá, state of Roraima (Brazilian Amazonia), through the use of geophysical methods (soil moisture sensors and GPR). The study was applied in four sandy soils. Besides chemical and physical analysis of soils, soil moisture sensors were installed for monitoring during an entire hydrological year (2010/2011), and performed the calibration of sensors , coupled with imaging of the soil along transects with GPR.

Results and discussion

As a result of calibration of the soil moisture sensors we obtained a general equation with an R ² greater than 0.9. There is an influence of soil moisture content and soil temperature in the distribution of vegetation types in Campinaranas. The use of GPR identified some determinants characteristics in these soils for the differentiating the Campinaranas, represented by spodic and C horizons.

Conclusions

The spodic horizons in soils under Forest Campinarana provided potential errors in the determination of soil moisture, requiring calibration data for the precise use of this device. The investigation of the soil through the GPR showed interesting results, which allowed continuous visualization of the main soil horizons along transects in the phytophysiognomies of Campinaranas.