Ratios between estimates of microbial biomass content and microbial activity in soils

The content levels and activities of the microbiota were estimated in topsoils and in one soil profile at agricultural and forest sites of the Bornhöved Lake district in northern Germany. Discrepancies between data achieved by fumigation-extraction (FE) and substrate-induced respiration (SIR), both used for the quantification of microbial biomass, were attributed to the composition of the microbial populations in the soils. In the topsoils, the active, glucose-responsive (SIR) versus the total, chloroform-sensitive microbial (FE) biomass decreased in the order; field maize monoculture (field-MM)>field crop rotation (field-CR) and dry grassland>beech forest. This ratio decreased within the soil profile of the beech forest from the litter horizon down to the topsoil. Differences between microbial biomass and activities suggested varying biomass-specific transformation intensities in the soils. The metabolic quotient (qCO₂), defined as the respiration rate per unit of biomass, indicates the efficiency in acquiring organic C and the intensity of C mineralization, while biomass-specific arginine-ammonification (arginine-ammonification rate related to microbial biomass content) seems to be dependent on N availability. The qCO₂, calculated on the basis of the total microbial biomass, decreased for the topsoils in the same order as did the ratio between the active, glucose-responsive microbial biomass to the total, chloroform-sensitive microbial biomass, in contrast to qCO₂ values based on the glucose-responsive microbial biomass, which did not. There was no difference between the levels of biomass-specific arginine-ammonification in topsoils of the fertilized field-CR, fertilized field-MM, fertilized dry grassland and eutric alder forest, but levels were lower in the beech forest, dystric alder forest, and unfertilized wet grassland topsoils. Ratios between values of different microbiological features are suggested to be more useful than microbiological features related to soil weight when evaluating microbial populations and microbially mediated processes in soils.     

Microbial biomass,activity, and organic matter accumulation in soils contaminated with heavy metals

Chemical characteristics and some parameters related to biological components were determined in 16 soils from a fairly homogeneous area in the north of Italy, contaminated with different levels of heavy metals. Correlation analysis of the parameters studied showed close positive relationships among the metals and with the organic C content in the soils studied. Negative relationships were observed among the heavy metals, soil respiration, and the ratio between evolved CO₂–C and microbial biomass C per unit time (specific respiratory activity). This was ascribed to an adverse heavy metal effect on the soil microflora, which appeared to increase the accumulation of organic matter as the heavy metal content increased, probably because the biomass was less effective in mineralising soil organic matter under these conditions.     

Soil microbial biomass and organic matter composition in soils under cultivation

To determine whether there is a relationship between the composition of soil organic matter and the activity of the soil microbial biomass, the composition of the organic matter in 12 typical arable soils in Northwest Germany was investigated by wet chemical analysis and CPMAS cross polarization magic angle spinning ¹³C-NMR spectroscopy. The data were correlated with the microbial biomass as estimated by substrate-induced respiration. A strong correlation between the microbial biomass and alkylic C compounds was observed (r=-0.960^***). Recalcitrant substances were enriched in this fraction, which were classified as humic acids according to the wet chemical procedure. The microbial decomposition of these humic acids is probably retarded, due to their chemical structure and/or physical bonding, when the soil microbial biomass activity is limited.     

Soil microbial biomass and enzyme activity in subarctic agricultural and forest soils

Summary Microbial biomass, activities of dehydrogenase, phosphatase, and urease, and numbers of ammonium oxidizers were determined at monthly intervals on soil samples obtained from an on-going tillage residue-management study during the summers of 1985 and 1986. The site was cleared of black spruce (Picea mariana, Mill.) in 1979 and has been planted to spring barley (Hordeum vulgare) since 1982. Tillage treatments were no-tillage or disked twice, and residuemanagement treatments were removal of stubble and loose straw or leaving all straw on the plots. Microbial biomass and enzyme activities were moderate to high in the Ap horizon but very low in the B horizon. There was no difference in any parameter measured due to tillage or residue management. In 1986, comparisons were made between the Ap horizon and the agricultural soil and the A horizon of the soil beneath an adjacent black-spruce forest. Total microbial biomass and enzyme activities were generally greater in the forest soil than in the agricultural soil. However, specific activity of the biomass was generally greater in the agricultural soil. Soil microbial biomass and urease activities of both agricultural and forest soils were similar to those reported for warmer climates, but dehydrogenase activity was higher and phosphatase was lower.     

铜尾矿污染土壤几种牧草的重金属抗性及微生物群落功能多样性研究

Copper （Cu） mine tailings, because of their high content of heavy metals, are usually hostile to plant colonization. A pot experiment was conducted to determine the tolerance of four forage grasses to heavy metals in Cu mine tailings and to examine the variation in the microbial functional diversity of soils from the tailing sites in southern China. All the four grass species survived on Cu mine tailings and Cu mine tailing-soil mixture. However, on pure mine tailings, the growth was minimal, whereas the growth was maximum for the control without mine tailings. The tolerance of grasses to heavy metals followed the sequence： Paspalum notatum 〉 Festuea arundinaeea 〉 Lolium perenne 〉 Cynodon daetylon. The planting of forage grasses enhanced the soil microbial biomass. The Biolog data indicated that the soil microbial metabolic profile values （average well color development, community richness, and Shannon index） of the four forage grasses also followed the sequence： P. notatum 〉 F. arundinaeea 〉 L. perenne 〉 C. daetylon. Thus, P. notatum, under the experimental conditions of this study, may be considered as the preferred plant species for revegetation of Cu mine tailing areas.     

Limitations of atp estimates of microbial biomass

Serious limitations were found in the use of ATP measurements as indicators of Pseudomonas paucimobilis biomass and activity in sterilized soil. These limitations were related to effects of moisture stress, nutrient variation and protozoan predation on soil ATP levels and ATP per bacterium. Rewetting dry soil resulted in an increase (2.2-fold) in ATP per bacterium, as did additions of glucose (5.9-fold) and (NH₄)₂SO₄ (2.8-fold). ATP per bacterium also differed between grazed and ungrazed bacteria. Carbon dioxide evolution and ATP concentrations varied independently with time. Thus, except under low nutrient conditions, when neither bacterial numbers nor ATP measurements changed, ATP concentrations did not indicate bacterial population dynamics or respiration. Carbon and nitrogen effects on ATP concentrations were reduced by adding an excess of glucose a few hours before ATP measurements.     

Ratios of microbial biomass estimates to evaluate microbial physiology in soil

Soil microbial biomass data derived from fumigation–extraction (FE), substrate-induced respiration (SIR) and ATP estimations differed significantly and were significantly correlated, which agrees to previous studies. In a second step, the SIR/FE, ATP/FE and SIR/ATP ratios were calculated to evaluate the glucose-responsive and active component of the microbial (active and resting) biomass and the glucose-responsive component of the active microbiota. Soils were sampled along gradients within and between associated ecosystems in Northern Germany, Denmark and along a gradient of heavy metal pollution in Finland. The ratios indicated that the active portion and glucose-responsive component decreased with proceeding litter decomposition, higher degree of sustainable land management practices and higher degree of heavy metal contamination. This work was presented at the workshop ‘Non-molecular manipulation of soil microbial communities’ at the University of Udine, Udine, Italy, 17–20 October 2004; convened by P.C. Brookes and M. De Nobili and supported by European Science Foundation.     

Quantifying microbial biomass phosphorus in acid soils

 This study aimed to validate the fumigation-extraction method for measuring microbial biomass P in acid soils. Extractions with the Olsen (0.5 M NaHCO₃, pH 8.5) and Bray-1 (0.03 M NH₄F–0.025 M HCl) extractants at two soil:solution ratios (1 : 20 and 1 : 4, w/v) were compared using eight acid soils (pH 3.6–5.9). The data indicated that the flushes (increases following CHCl₃-fumigation) of total P (P_t) and inorganic P (P_i) determined by Olsen extraction provided little useful information for estimating the amount of microbial biomass P in the soils. Using the Bray-1 extractant at a soil:solution ratio of 1 : 4, and analysing P_i instead of P_t, improves the reproducibility (statistical significance and CV) of the P flush in these soils. In all the approaches studied, the P_i flush determined using the Bray-1 extractant at 1 : 4 provided the best estimate of soil microbial biomass P. Furthermore, the recovery of cultured bacterial and fungal biomass P added to the soils and extracted using the Bray-1 extractant at 1 : 4 was relatively constant (24.1–36.7% and 15.7–25.7%, respectively) with only one exception, and showed no relationship with soil pH, indicating that it behaved differently from added P_i (recovery decreased from 86% at pH 4.6 to 13% at pH 3.6). Thus, correcting for the incomplete recovery of biomass P using added P_i is inappropriate for acid soils. Although microbial biomass P in soil is generally estimated using the P_i flush and a conversion factor (k _P) of 0.4, more reliable estimates require that k _P values are best determined independently for each soil. Received: 3 February 2000     

PH对红壤微生物生物量碳和生物量磷的影响

The impact of pH changes on microbial biomass carbon (Cmic) and microbial biomass phosphorus (Pmic) were examined for 3 red soils under citrus production with different lengths of cultivation. Soil pH significantly affected Cmic and Pmic. The Cmie and Pmic changes, as a function of soil pH, appeared to follow a normal distribution with the original soil pH value at the apex and as pH increased or decreased compared to the original soil pH, Cmic and Pmic declined. Moreover, there were critical pH values at both extremes (3.0 on the acidic side and 8.0 to 8.5 on the alkaline side), beyond which most of microorganisms could never survive. The effect of pH on Cmic and Pmic was also related to the original soil pH. The higher the original soil pH was, the less Cmic or Pmic were affected by pH change. It is suggested that soil microorganisms that grow in a soil environment with a more neutral soil pH range (i.e. pH 5.5-7.5) may have a greater tolerance to pH changes than those growing in more acidic or more alkaline soil pH conditions.     

Soil microbial biomass and fluorescein diacetate hydrolytic activity in Japanese acidic tea field soils

The soil microbial biomass (SME) content and fluorescein diacetate (FDA) hydrolytic activity in 21 acidic tea field soils in Japan were determined. SM 3 content in the tea field soils was quantitatively similar to that in 13 arable soils with neutral soil pH previously reported. However, the ratio of the SMB content to organic matter content in the tea field soils classified as red-yellow soil, brown forest soil, and lithosol was clearly lower than that in the neutral arable soils classified as non-volcanic ash soil. FDA hydrolytic activity in the tea field soils was higher than the activity in various soils with neutral soil pH and showed a negative relationship with the soil pH.     

Microbial biomass and activity in urban soils contaminated with Zn and Pb

Summary The effects of heavy metals on microbial biomass and activity were investigated in 30 urban soils, contaminated mainly with Zn and Pb to different extents, in terms of the physicochemical and biological characteristics of the soils. Evaluated by simple and multiple regression analyses, the microbial biomass was not affected significantly by easily soluble Zn + Pb (extractable with 0.1 NHCI). The biomass was accounted for as a function of cation exchange capacity (CEC), total organic C and the numbers of fungal colonies present (R ² = 0.692). Carbon dioxide evolution from soils, which reflected microbial activity, was studied on soils incubated with microbial-promoting substrates (glucose and ammonium sulfate) or without. Carbon dioxide evolution was negatively related to Zn+Pb, and this inhibitory effect of the metals was greater in the soils incubated with substrates. Carbon dioxide evolution in soils with substrates was closely related to Zn+Pb, bacterial numbers and the numbers of fungal colonies (R ² = 0.718). Carbon dioxide evolution in soils without substrates was accounted for as a function of Zn + Pb, biomass and the C/N ratio (R ² = 0.511). Using these relationships, the effects of heavy metals on soil microorganisms are discussed in terms of metabolically activated and dormant populations.     

中国土壤微生物量的大小

The microbial biomass C, N and P of soils all over China were determined in this study to study their affecting factors. The results, about 100-417 mg C kg^-1 soil, 18-51 mg N kg^-1 soil and 4.4-27.3 mg P kg^-1 soil, showed the biomass C, N and P in linear relationship with the soil total organic C, toal N and soil organic P. The ratios of C: N and C:P, ranging from 5.6 to 9.6 and from 11.2 to 48.4 respectively, were affected by soil pH, texture, crop rotation, macroclimate, etc. The ratio of C:N in soil biomass increases gradually from the north to the south in China.     

Changes in microbial biomass and activity in soils amended with phenolic acids

The phenolic acids p-hydroxybenzoic, ferulic, caffeic and vanillic acid, were added to soil of the Countesswells series that had been fallow or carried crops of potatoes, peas or barley for two consecutive years. Changes in phenolic acid concentration, the soil biomass, the respiration rate, and soil amylase activity were measured over 28 days. All the phenolic acids were sorbed by the soils which was generally in the order caffeic > ferulic = vanillic > hydroxybenzoic acid. The phenolic acids stimulated soil respiration and increased the biomass as determined by the substrate-induced respiration method. but the fumigation method of biomass assessment gave anomalous results. The soil amylase activity was initially increased by phenolic acid amendments but soon decreased, and after 7 days was less than in non-amended soil although activity had increased again after 28 days. The rates of respiration and the total phenolic acid concentrations were similar to unamended controls after 28 days. The immediate respiration response, measured 1–6 h after amendment, indicated that caffeic acid gave the largest initial response of the phenolic tested, this being 55–72% of that given by glucose. Soil from the potato plot showed the highest immediate response to the phenolic acid amendments measured as a proportion of the respiration response to glucose. The findings suggest that some crops stimulate the growth of phenolic-acid degrading organisms.     

Soil microbial biomass and bacterial and fungal community structures responses to long-term fertilization in paddy soils

Purpose

Long-term fertilization can influence soil biological properties and relevant soil ecological processes with implications for sustainable agriculture. This study determined the effects of long-term (>25 years) no fertilizer (CK), chemical fertilizers (NPK) and NPK combined with rice straw residues (NPKS) on soil bacterial and fungal community structures and corresponding changes in soil quality.

Materials and methods

Soil samples were collected from a long-term field site in Wangcheng County established in 1981 in subtropical China between mid summer and early autumn of 2009. Terminal restriction fragment length polymorphism (T-RFLP) and the real-time quantitative polymerase chain reaction (real-time qPCR) of bacterial and fungal community and microbial biomass (MB-C, -N and -P) were analyzed.

Results and discussion

Redundancy analysis of the T-RFLP data indicated that fertilization management modified and selected microbial populations. Of the measured soil physiochemical properties, soil organic carbon was the most dominant factors influencing bacterial and fungal communities. The bacterial and fungal diversity and abundance all showed increasing trends over time (>25 years) coupling with the increasing in SOC, total N, available N, total P, and Olsen P in the fertilized soils. Compared to chemical fertilizer, NPKS resulted in the greater richness and biodiversity of the total microbial community, soil organic C, total N, MB-C, -N and -P. The high biodiversity of microbial populations in NPKS was a clear indication of good soil quality, and also indicated higher substrate use efficiency and better soil nutrient supplementation. Otherwise, unfertilized treatment may have a soil P limitation as indicated by the high soil microbial biomass N: P ratio.

Conclusion

Our results suggest that NPKS could be recommended as a method of increasing the sustainability of paddy soil ecosystems.     

Characterizing the availability of metals in contaminated soils. II

Abstract. Methods that can be used to determine the distribution of metal species in soil solution are critically reviewed and assessed. They are divided into two groups: those that can provide free ion activity, and those that measure labile species in solution. Ion selective electrodes have long been regarded as a promising technique, but there are practical problems in performing accurate measurements and only the Cu electrode has been used routinely. The Donnan membrane technique is capable of measuring the free ion activity of many metals, but adequate sensitivity can be a problem. Although resin competition methods are versatile, care must be exercised to avoid perturbing the solution excessively. Anodic stripping voltammetry (ASV) measures labile species, so the approximation involved in interpretation as simple inorganic species, from which free ion activities can be derived, should be recognized. Diffusive gradients in thin-films also measures labile species, but it is applicable to a much wider range of metals than ASV. It requires larger volumes of solution, but it can be used directly on the whole soil where it also measures the metal that can be rapidly supplied to solution. Other techniques such as permeable liquid membranes have yet to be used for measurements on soil solution. All of these methods have strength and weaknesses, and measure different aspects of speciation. Knowledge of the availability of the metals to biota is likely to be best advanced by the critical use of one or more of these speciation methods with a thorough understanding of exactly what is being measured.     

Enzyme activities and microbial biomass in coastal soils of India

Soil salinity is a serious problem for agriculture in coastal regions, wherein salinity is temporal in nature. We studied the effect of salinity, in summer, monsoon and winter seasons, on microbial biomass carbon (MBC) and enzyme activities (EAs) of the salt-affected soils of the coastal region of the Bay of Bengal, Sundarbans, India. The average pH of soils collected from different sites, during different seasons varied from 4.8 to 7.8. The average organic C (OC) and total N (TN) content of the soils ranged between 5.2-14.1 and 0.6-1.4 g kg⁻¹, respectively. The electrical conductivity of the saturation extract (ECe) of soils, averaged over season, varied from 2.2 to 16.3 dSm⁻¹. The ECe of the soils increased five fold during the summer season (13.8 dSm⁻¹) than the monsoon season (2.7 dSm⁻¹). The major cation and anion detected were Na⁺ and Cl⁻, respectively. Seasonality exerted considerable effects on MBC and soil EAs, with the lowest values recorded during the summer season. The activities of β-glucosidase, urease, acid phosphatase and alkaline phosphatase were similar during the winter and monsoon season. The dehydrogenase activity of soils was higher in monsoon than in winter. Average MBC, dehydrogenase, β-glucosidase, urease, acid phosphatase and alkaline phosphatase activities of the saline soils ranged from 125 to 346 mg kg⁻¹ oven dry soil, 6-9.9 mg triphenyl formazan (TPF) kg⁻¹ oven dry soil h⁻¹, 18-53 mg p-nitro phenol (PNP) kg⁻¹ oven dry soil h⁻¹, 38-86 mg urea hydrolyzed kg⁻¹ oven dry soil h⁻¹, 213-584 mg PNP kg⁻¹ oven dry soil h⁻¹ and 176-362 mg PNP g⁻¹ oven dry soil h⁻¹, respectively. The same for the non-saline soils were 274-446 mg kg⁻¹ oven dry soil, 8.8-14.4 mg TPF kg⁻¹ oven dry soil h⁻¹, 41-80 mg PNP kg⁻¹ oven dry soil h⁻¹, 89-134 mg urea hydrolyzed kg⁻¹ oven dry soil h⁻¹, 219-287 mg PNP kg⁻¹ oven dry soil h⁻¹ and 407-417 mg PNP kg⁻¹ oven dry soil h⁻¹, respectively. About 48%, 82%, 48%, 63%, 40% and 48% variation in MBC, dehydrogenase activity, β-glucosidase activity, urease activity, acid phosphatase activity and alkaline phosphatase activity, respectively, could be explained by the variation in ECe of saline soils. Suppression of EAs of the coastal soils during summer due to salinity rise is of immense agronomic significance and needs suitable interventions for sustainable crop production.     

Soil microbial biomass: The eco-physiological approach

In the 1980s ecosystem research projects were implemented world-wide since there was a pressing need to quantify the impacts of anthropogenic pollutants. Soil ecosystem analyses concentrated first on the quantification of the element and energy transfer between pools. Since mineralization of organic substrates and the release of nutrients and elements are due to the heterotrophic activity of the microbial decomposer compartment, this subsystem of terrestrial ecosystems gained importance. Direct microscopic observation methods were inadequate for the quantification of environmental impacts on the microflora. We adopted the maintenance requirement concept for the quantification of environmental impacts or stress effects on the soil microbial community. The paper gives a brief inside to the concept of maintenance from autecological studies and describes the underlying points which lead to our experimental approach of its application at the synecological level (i.e., microbial biomass as a single ecological entity) - a process which rested on long-term continuous research.     

Turnover time of microbial biomass carbon in Japanese upland soils with different textures

We investigated the turnover time of microbial biomass-C in Japanese upland soils with various textures and examined the soil physicochemical properties influencing their turnover time. Samples from five different soil types (sand-dune regosol, light-colored Andosol, humic Andosol, brown forest soil, and dark red soil) were taken from upland concrete-frame plots in the experimental field of Chiba University. Each soil amended with [U -¹³C] glucose was incubated for 80 d at 25°C. Microbial biomass-C and -¹³C in soil were periodically determined by the fumigation-extraction method. The longest turnover time of microbial biomass-C was observed in the dark red soil (215 d) followed by the humic Andosol (134 d), brown forest soil (97 d), and light-colored Andosol (83 d) and the shortest in the sand-dune regosol (45 d). The turnover time of microbial biomass-C was significantly correlated with the value of soil clay (R: 0.917*), CEC (R: 0.921*), and macroaggregate (R: 0.907*) contents, but not with the total-C content. The amount of microbial biomass-C showed a close correlation with the turnover time of microbial biomass-C, suggesting that the turnover time of microbial biomass-C is an important factor influencing the accumulation of microbial biomass-C in soil.     

Seasonal changes in microbial biomass and nutrient flush in forest soils

Microbial biomass and N, P, K, and Mg flushes were estimated in spring, summer, autumn, and winter samples of different forest soils. The microbial biomass showed significant seasonal fluctuations with an average distribution of 880±270 g C g^-1 soil in spring, 787±356 g C g^-1 soil in winter, 589±295 g C g^-1 soil in summer, and 560±318 g C g^-1 soil in autumn. The average annual concentrations of C, N, P, K, and Ca in the microbial biomass were 704, 106, 82, 69 and 10 g g^-1 soil, respectively. Microbial C represented between 0.5 and 2% of the organic soil C whereas the percentage of microbial N with respect to the total soil N was two-to threefold higher than that of C; the annual fluctuations in these percentages followed a similar trend to that of the microbial biomass. Microbial biomass was positively correlated with soil pH, moisture, organic C, and total N. The mean nutrient flush was 31, 15, 7, and 4 g g^-1 soil for N, K, P, and Mg, respectively, and except for K, the seasonal distribution was autumn spring winter summer. The average increase in available nutrient due to the mineralization of dead microbial cells was 240% for N, and 30, 26, and 14% for P, K, and Mg, respectively. There was a positive relationship between microbial biomass and the N, P, K, and Mg flushes. All the variables studied were significantly affected by the season, the type of soil, and the interaction between type of soil and season, but soil type often explained most of the variance.     

Dealing with contaminated soils

Abstract. Although there is a need to protect soils against future pollution, many sites are already badly contaminated by past activity. The paper describes some of the contaminants which affect soils, and the policies for acceptable levels adopted by national governments. Various appropriate clean-up policies are discussed.