Effects of chitin amendment of soil on microorganisms,nematodes, and growth of white clover (Trifolium repens L.) and perennial ryegrass (Lolium perenne L.)

Effects of soil amendment with crabshell chitin on the growth of white clover (Trifolium repens L.) and perennial ryegrass (Lolium perenne L.), and on populations of soil bacteria, fungi, and plant-parasitic and free-living nematodes were investigated in a pot trial. Five soil samples were collected from Te Puke (Paengaroa Shallow Sand, a Typic Hapludand) and five from Hamilton (Bruntwood silt loam, an Aquic Hapludand), New Zealand. Subsamples of each soil were either amended with chitin or unamended and planted with white clover and ryegrass. The ryegrass shoot weight in amended soil was greater (P<0.01), most probably due to N mineralised from chitin. A significantly lower (P<0.01) root: shoot ratio of ryegrass in the amended soil also suggested improved N availability, and therefore less root mass was needed to support a given shoot mass. A reduction in nodulation was observed in 12-day-old white clover seedlings (P<0.05) and also in 6-week-old seedlings (P<0.01). The shoot weight of white clover was significantly lower (P<0.05) in amended soil, possibly due to phytotoxic effects of chitin. Chitin increased (P<0.01) the populations of bacteria and fungi by 13-fold and 2.5-fold, respectively. The cyst nematode of white clover, Heterodera trifolii, was significantly reduced in chitin-amended soil, possibly due to increased levels of chitinase produced by rhizosphere microorganisms. Two other plant-parasitic nematodes, Pratylenchus spp. and Tylenchus spp., were also reduced in ryegrass roots and in soil as a result of the chitin amendment. However, the total number of free-living nematodes increased 5.4-fold in amended soil.     

Effects of crumb rubber waste as a soil conditioner on the nematode assemblage in a turfgrass soil

The impacts of waste crumb rubber soil amendment on nematode abundance, community structure and soil characteristics were studied in pot grown Lolium perenne L. Three treatments, no crumb rubber (CK), 10% and 15% crumb rubber (CR), were arranged in a randomized complete design. After 3 months’ turfgrass growth, soil nematodes were extracted and identified to genus level, and populations of total, bacterivorous, fungivorous, omnivorous, predatory and plant parasite nematodes were counted. Genus diversity, richness, evenness, plant parasite index (PPI) and maturity index (MI) were calculated to compare nematode community structure. Thirteen genera of soil nematodes in all treatments were identified, of which Helicotylenchus was dominant. Crumb rubber incorporation significantly decreased plant parasite and omnivorous nematode populations, but increased the abundance of predatory nematodes. However, fungivorous and bacterivorous nematode populations were not significantly affected by crumb rubber amendment. Pots treated with 15% CR had the lowest number of plant parasite, omnivorous nematodes and the highest number of fungivorous, predatory nematodes. Shannon's diversity index (H′), evenness (J′), PPI and PPI/MI reduced in pots receiving crumb rubber, whereas dominace (λ) and maturity index (MI) increased in crumb rubber treatments. In addition, CR application decreased soil bulk density and pH value, but increased soil moisture.     

Potential of Nematoctonus conidia for biological control of soil-borne phytonematodes

Populations of the mycophagous soil ncmatode Aphelenchus avenae living in sterile sand were reduced by addition of conidia of Nematoctonus concurrens and N. haptocladus. Natural, mixed nematode populations in non-sterile soil were unaffected by comparable treatments. Observations on conidia placed in contact with non-sterile soil showed that their germination was inhibited and that lysis of their germlings occurred.     

Host status of 10 fungal isolates for two nematode species, Filenchus misellus and Aphelenchus avenae

The classification of nematodes in the family Tylenchidae into plant parasites, plant associates or fungal-feeders for community analyses, have been much discussed by nematode ecologists. For an appropriate classification, fungal-feeding habits in the family need to be studied. To evaluate the host status of 10 fungal isolates for Filenchus misellus (Tylenchidae) and Aphelenchus avenae (Aphelenchida, Aphelenchidae), population growth rates, body length and width and sex ratios of the nematodes were measured after 40-day culture on fungal colonies at 25 °C. For F. misellus, the fungi determined as good hosts were two Basidiomycota fungi (Agaricus bisporus, Coprinus cinereus), three Ascomycota fungi (Chaetomium cochlioides, Chaetomium funicola, Chaetomium globosum) and a plant-pathogenic fungus (Rhizoctonia solani) on the basis of nematode population growth rate and female body length. Interestingly Pleurotus ostreatus, known as a predaceous fungus for the other nematodes, was also a good host for F. misellus. While, for A. avenae, good hosts were four plant-pathogenic fungi (Fusarium oxysporum f. sp. conglutinans, F. oxysporum f. sp. cucumerinum, Pythium ultimum, R. solani) and A. bisporus. A. avenae was trapped and preyed upon by Pleurotus hyphae. In F. misellus, males were 7-21% of adults, but the ratio did not correlate significantly with the population growth rate. In A. avenae, no male occurred. Differences in habitat preference between Filenchus and Aphelenchus were explained on the basis of the host status and habitat preferences of the tested fungi.     

Limitations in the application of the fumigation technique for biomass estimations in amended soils

The fumigation technique for the estimation of microbial biomass-C was applied at different periods after amendment of three agricultural soils with ¹⁴C-labelled glucose, cellulose and wheat roots. By daily monitoring of evolved CO₂ and ¹⁴CO₂ it was recognized that the CO₂ from the degradation of the amendment had an interfering effect on biomass calculations. Biomass estimations were valid only when CO₂ from the degradation of the amendment had slowed, 3 days after glucose amendment, 14 days after addition of cellulose, and 28 days after amendment with wheat roots.Fumigated, reinoculated soils degraded glucose faster than did the corresponding control samples, causing an overestimation of biomass-C. By contrast biomass-C was underestimated in soils amended with cellulose or wheat roots due to lower rates of degradation of the added C-sources in fumigated samples. The reduced capacity for degradation of complex organic materials may be due to smaller decomposer populations in inoculated fumigated soils; populations recovered within 20 days to only 10–20% of their original biomass-C content. Re-establishment of biomass in fumigated samples was tested with inocula in amounts increasing to 10, 50 and 100% of corresponding control samples. The K-factor was not influenced by these treatments. Estimates of biomass in soil during the rapid phase of degradation of wheat roots were influenced by the amount of inoculum.     

Suppression of Meloidogyne javanica by Pseudomonas aeruginosa IE-6S in tomato: the influence of NaCl, oxygen and iron levels

Understanding the environmental factors that influence the suppression of disease-suppressive strains of Pseudomonas fluorescens is an essential step toward improving the level and reliability of their biocontrol activity. A 0.8 M NaCl concentration was optimal for in vitro survival and growth of IE-6S⁺ while, nematicidal activity by IE-6S⁺ was maximal when the bacterium was exposed to 0.4 M NaCl. The bacterium was highly sensitive to high (1.6 M) NaCl concentration. Culture filtrate of the bacterium resulting from the medium supplemented with 0.2 or 0.4 M NaCl showed the presence of secondary metabolite, hydrogen cyanide (HCN). Soil amendment with IE-6S⁺ alone or in conjunction with up to 0.8 M NaCl enhanced bacterial efficacy towards Meloidogyne javanica, the root-knot nematode. Soil amendment with NaCl up to 0.8 M also resulted in enhanced bacterial rhizosphere colonization and growth of tomato seedlings. Protein content of the shoot was reduced when soil was amended with 1.6 M NaCl. Inner root establishment of the bacterium was greatly affected in the soils treated with 1.6 M NaCl. Under in vitro conditions, IE-6S⁺ showed enhanced growth when kept at ambient oxygen conditions while the growth of bacterium affected when incubated at low oxygen conditions. Culture filtrate of the bacterium resulting from low oxygen level caused greater mortality of M. javanica juveniles in vitro compared with the filtrates obtained from ambient oxygen conditions. Culture filtrate from low oxygen conditions also showed the presence of hydrogen cyanide while those from ambient oxygen condition did not. Under glasshouse conditions, regardless of bacterial application, nematode penetration rate was greater when the pots were watered from the top; nematode penetration was lowered in bacterized pots compared with non-bacterized controls. IE-6S⁺ applied in the pots either watered from the top or bottom had no significant impact on growth of tomato but protein contents of the leaves increased after treatment with the bacterium. Rhizosphere and inner root colonization of the bacterium increased when the pots were watered from the top. Under in vitro conditions, with an increased iron concentration in the form of FeEDDHA, growth of IE-6S⁺ and its nematicidal activity increased. Culture filtrate of IE-6S⁺ obtained from liquid King's B medium supplemented with 0.5 or 1.0 mM FeEDDHA showed the presence of HCN. Under glasshouse conditions, soil treated with FeEDDHA alone did not reduce nematode penetration rates but did reduce greatly when applied in conjunction with IE-6S⁺. FeEDDHA applied at 0.5 mg/kg of soil in combination with IE-6S⁺ significantly enhanced plant growth and leaf protein contents. FeEDDHA at 1 mg/kg of soil increased bacterial populations both in the rhizosphere and inner root tissues of tomato.     

Effects of four organic amendments on banana parasitic nematodes and soil nematode communities

Plant–parasitic nematodes are injurious crop pests that have been managed mainly by chemical nematicides. However, safe and alternative methods such as those based on organic materials need to be developed. Our study has evaluated (i) the effects of four organic amendments with different biochemical compositions that are abundantly produced in the study area (Guadeloupe, French West Indies) on soil nematode communities and (ii) some of the suppression mechanisms of banana parasitic nematodes, especially those involving the soil food web. This study is based on a microcosm experiment comparing sugarcane bagasse, sugarcane sludge, plant residues and sewage sludge. All amendments except sewage sludge decreased the root abundances of plant–parasitic nematodes, by 96% in the case of sugarcane bagasse. For this treatment, soil densities of carnivorous nematodes were six times higher than the treatments without organic amendment. Plant residues and bagasse were mainly composed of materials that are difficult to decompose, namely cellulose and lignins. These organic materials favored a fungal decomposition pathway and permitted development of carnivorous nematode populations and increased the Channel Index (CI). Pratylenchus coffeae control after sugarcane refinery sludge application remains unexplained. Lastly, sewage sludge, composed mainly of easily degradable compounds, did not permit nematode control, and only bacterivorous nematode populations were enhanced by this treatment.     

Chitin decomposition in a model soil system

The effect of various organisms on the decompositon of chitin in a gnotobiotic soil system was investigated. Chitin decomposers were isolated from the short grass prairie in Colorado and selected by their ability to use chitin as a source of both C and N. Three bacteria, a fungus, and an actinomycete were grown for 45 days in sterile chitin amended (3 mg g^?1 chitin-C) and unamended soil microcosms. Net mineralization of ammonium was greatest in the chitin-ainended microcosms. The greatest increases in N mineralization occurred in chitin-amended microcosms containing the fungus and the actinomycete. A second series of sterile soil microcosms amended with chitin (3 mg g^?1 chitin-C) were inoculated with decomposers, a fungus and a bacterium, and a nematode and an amoeba (bacteriophagic grazers) in various combinations. Bacterial and grazer populations, NH₄⁺ CO₂ evolution, and residual chitin were measured periodically for 80 days. Bacterial grazing reduced bacterial populations, increased N mineralization, but had no effect on the decomposition of chitin.     

Brassica napus seed meal soil amendment modifies microbial community structure, nitric oxide production and incidence of Rhizoctonia root rot

A low glucosinolate content (21.8 μmol g⁻¹) Brassica napus seed meal (RSM) applied to orchard soils altered communities of both pathogenic and saprophytic soil micro-organisms. RSM amendment reduced infection by native and introduced isolates of Rhizoctonia spp. and recovery of Pratylenchus spp. from apple roots. Root infection by Rhizoctonia solani AG-5 was also suppressed in split-root assays where a portion of the root system was cultivated in RSM-amended soils and the remainder grown in the presence of the pathogen but lacking RSM. R. solani hyphal growth was not inhibited by RSM amendment. Suppression of Pratylenchus was attained to an equivalent extent by amending soils with either RSM or soybean meal (SM) when applied to provide a similar N content. Thus, glucosinolate hydrolysis products did not appear to have a significant role in the suppression of Rhizoctonia spp. or Pratylenchus spp. obtained via RSM amendment. RSM amendment elevated populations of Pythium spp. and of ammonia-oxidizing bacteria that release nitric oxide but suppressed fluorescent pseudomonad numbers. Streptomyces spp. soil populations increased significantly in response to RSM but not SM amendment. The vast majority of Streptomyces spp. recovered from the apple rhizosphere produced nitric oxide and possessed a nitric oxide synthase homolog. We propose that transformations in the bacterial community structure are associated with the observed control of Rhizoctonia root rot, with NO production by soil bacteria potentially having a role in the induction of plant systemic resistance.     

Nematode suppression with brassicaceous amendments: application based upon glucosinolate profiles

Glucosinolate profiles differ among plant species and their isothiocyanate (ITC) derivatives differ in toxicity to nematodes. Successful management of plant-parasitic nematodes by ITCs requires the incorporation of appropriate amounts of glucosinolate-containing biomass. Plant materials, containing glucosinolate-precursors of the ITCs most toxic to nematodes, were selected and applied to soil based upon ITC lethal concentration (LC) values. This provided a reliable and repeatable basis for application rates for suppression of Meloidogyne javanica and Tylenchulus semipenetrans by Brassica hirta and M. javanica by B. juncea. Sufficient biomass of B. hirta to potentially yield 0.03-0.12 μmol ml⁻¹ of glucotropeolin reduced nematode survival compared to similar amounts of broccoli (Brassica oleraceae var. botrytis). At biomass levels providing >0.37 μmol ml⁻¹ of glucotropeolin, mortality of M. javanica was 100% with B. hirta. Biomass of B. juncea potentially yielding 2.82 μmol ml⁻¹ of sinigrin reduced M. javanica survival 65% below that obtained by a similar amount of broccoli. Rates of B. juncea to yield lethal levels of allyl ITC to reduce T. semipenetrans survival underestimated the glucosinolate application rates for this amendment. Application of plant biomass to soil >2.9% w/w reduced M. javanica survival regardless of the glucosinolate concentration of the amendment material. Application of brassicaceous amendments to soil initiates complex and dynamic biological and chemical processes. Despite the inherent complexity, we find that brassicaceous amendments can be applied to achieve consistent and repeatable nematode suppression when based upon the chemistry of the incorporated material.     

Soil fungi: Relationships between hyphal activity and staining with fluorescein diacetate

The relationship between fungal activity in soil and staining with fluorescein diacetate (FDA) was investigated using Penicillium citrinum and Rhizoctonia solani inoculated into autoclaved and non-sterilized soil, with or without nutrient amendment. Correlations of fungal activity with FDA staining allowed a quantitative relationship between FDA-staining and fungal CO₂-evolution to be calculated. Results suggest that where nutrient fluxes occur in the soil, correlation between FDA-staining and CO₂ evolution may be useful in assessing fungal contributions to carbon transformations.     

Efficacy of Burkholderia cepacia MCI 7 in disease suppression and growth promotion of maize

 Repeated greenhouse experiments were performed to evaluate the ability of a maize-rhizosphere isolate of Burkholderia cepacia, applied as a seed coating, to promote maize growth in both uninfested soil and soil infested with a maize pathogenic strain of Fusarium moniliforme, and to displace or negatively affect the population of F. moniliforme throughout plant growth. Results demonstrated that the B. cepacia strain MCI 7 is a promising plant-growth-promoting inoculant for maize. In repeated greenhouse trials, bacterization of maize seeds with B. cepacia MCI 7 resulted in a significant (P<0.05) increase of maize plant growth in both uninfested soil and soil infested with F. moniliforme ITEM-504, as compared to uninoculated plants. Moreover, B. cepacia MCI 7 was able to negatively affect the rhizoplane colonization of F. moniliforme that showed significantly (P<0.05) lower values of population density throughout plant growth, as compared with respective values observed in the root system of uninoculated plants. The effect on plant growth following introduction of B. cepacia MCI 7 into the maize rhizosphere has also been investigated using two corn cultivars differing in their degree of resistance to Fusarium. Results showed that B. cepacia MCI 7 was able to determine an increased growth response (P<0.05) of the two corn cultivars in both uninfested soil and soil infested with F. moniliforme. Received: 10 June 1999     

Effect of organic amendment amount on soil nematode community structure and metabolic footprints in soybean phase of a soybean-maize rotation on Mollisols

It has been well documented that organic amendment affects soil nematode community structure. However, little is known about the effect of organic amendment amount on soil nematodes. To assess the effect of the amount of organic amendments on soil nematode community structure and metabolic activity, the community composition, abundance, and metabolic footprints of soil nematodes were determined in a long-term field experiment with various amounts of organic amendment in Northeast China. Fertilization treatments included an unfertilized control (CK), chemical fertilizer without manure amendment (OM₀), manure applied at 7.5 Mg ha^-1 plus chemical fertilizer (OM₁), and manure applied at 22.5 Mg ha^-1 plus chemical fertilizer (OM₂). A total of 46 nematode genera were found. Treatments with the largest amount of organic amendment had the smallest number of plant parasite genera (5), but a largest number of dominant genera (7). Soil nematodes, bacterivores, and fungivores were the most abundant in OM₂, followed by OM₁, and the lowest in OM₀ and CK. Organic amendment increased the enrichment index (EI), and the large amount of organic amendment increased the metabolic footprints of bacterivore (Baf) and fungivore (Fuf) and enrichment footprint (Ef). The relationships between Baf (or Fuf) and the increases in soil organic carbon (ΔSOC) and total nitrogen (ΔTN) were stronger than those of bacterivore (or fungivore) abundance with ΔSOC and ΔTN, except for the relationship between bacterivore abundance and ΔSOC. The EI and Ef were positively correlated with ΔSOC and ΔTN. These findings suggest that the amount of organic amendment affects soil nematode activity and function at entry levels in soil food web, and that metabolic footprints of soil nematodes may be better indicators than their abundances in assessing their relationships with soil nutrients.     

Consecutive applications of brassica green manures and seed meal enhances suppression of Meloidogyne javanica and increases yield of Vitis vinifera cv Semillon

This study examined the result of 1–3 year application sequences of two brassica green manures (Indian mustard cv Nemfix and BQ mulch™), Nemfix seed meal and Nemacur^® on the suppression of root knot nematode Meloidogyne javanica in soil and roots, and the consequent improvement on vigour and productivity of Vitis vinifera cv Semillon. Soil examination revealed ca. 37–78% suppression of M. javanica populations when soil was amended with brassica green manures, Nemfix seed meal and Nemacur^® for 1–3 consecutive years compared to unamended soil. In all cases, M. javanica populations were significantly reduced after 1 year of treatment with a further reduction in the second year of treatment. The third year application did not have any significant reduction over the second year treatment. A suppression of M. javanica populations in soil after 3 consecutive years of application of brassica green manures, Nemfix seed meal and Nemacur^® significantly increased yield by 69–101% compared to the inoculated control (unamended) treatment. Three consecutive years of application of green manures and Nemfix seed meal significantly increased starch concentration in the roots to between 23 and 25% compared to the inoculated control treatment (concentration 14%). Fresh pruning weights were significantly increased by 35% in 2–3 consecutive years of application of Nemfix green manure treatment only compared to the inoculated control treatment. Applications of the green manures, Nemfix seed meal and Nemacur^® for 1–3 consecutive years did not have any significant effect on berry juice characteristics.     

Co-incorporation of biodegradable wastes with crop residues to reduce nitrate pollution of groundwater and decrease waste disposal to landfill

Return of high nitrogen (N) content crop residues to soil, particularly in autumn, can result in environmental pollution resulting from gaseous and leaching losses of N. The EU Landfill Directive will require significant reductions in the amounts of biodegradable materials going to landfill. A field experiment was set up to examine the potential of using biodegradable waste materials to manipulate losses of N from high N crop residues in the soil. Leafy residues of sugar beet were co‐incorporated into soil with materials of varying C:N ratios, including molasses, compactor waste, paper waste, green waste compost and cereal straw. The amendment materials were each incorporated to provide approximately 3.7 t C per hectare. The most effective material for reducing nitrous oxide (N₂O) production and leaching loss of NO₃^? was compactor waste, which is the final product from the recycling of cardboard. Adding molasses increased N₂O and NO₃^? leaching losses. Six months following incorporation of residues, the double rate application of compactor waste decreased soil mineral N by 36 kg N per hectare, and the molasses increased soil mineral N by 47 kg N per hectare. Compactor waste reduced spring barley grain yield by 73% in the first of years following incorporation, with smaller losses at the second harvest. At the first harvest, molasses and paper waste increased yields of spring barley by 20 and 10% compared with sugar beet residues alone, and the enhanced yield persisted to the second harvest. The amounts of soil mineral N in the spring and subsequent yields of a first cereal crop were significantly correlated to the lignin and cellulose contents of the amendment materials. Yield was reduced by 0.3–0.4 t/ha for every 100 mg/g increase in cellulose or lignin content. In a second year, cereal yield was still reduced and related to the cellulose content of the amendment materials but with one quarter of the effect. Additional fertilizer applied to this second crop did not relieve this effect. Although amendment materials were promising as tools to reduce N losses, further work is needed to reduce the negative effects on subsequent crops which was not removed by applying 60 kg/ha of fertilizer N.     

Some factors affecting survival of sclerotia of Macrophomina phaseolina in soil

At least 75% of the sclerotia of Macrophomina phaseolina survived for 1 yr in most natural soils kept at 26°C and at 50–55% of the soil moisture holding capacity (m.h.c.). Although survivability was reduced in a very acid soil (pH 4.5) collected under a pine stand, 33% of the sclerotia survived for 1 yr. Soil pH had very little or no effect on sclerotial survivability. Of three organic amendments tested (alfalfa hay, chitin, pine needles) only ground alfalfa hay at 0.8% (w/w) reduced survivability of sclerotia in soil by about 75% in a year. Alfalfa hay at 0.4% reduced survivability by 36%. Various N sources added at 200 μg Ng^?1 soil had no effect on survival. Of 13 fungicides tested, only benomyl and captan at 20 μg a.i. g^?1 soil appreciably reduced populations of sclerotia in soil.Soil temperature and moisture content were the two most important factors affecting survivability of sclerotia. At ?5 or 5°C the biggest drop in sclerotial survivability occurred when the soil was incubated moist (at 50% m.h.c. or more). At 26°C the biggest drop occurred in air-dried soil (2–3% m.h.c.) and survivability was decreased to some extent at 15 and 30% m.h.c. Survivability also dropped rapidly in moist soil (50–55% m.h.c.) exposed to four cycles each having 3-week freezing (?5°C) and 1 week thawing (26°C). Sclerotia in air-dried soil (2–3% m.h.c.) continuously kept at ?5°C maintained nearly complete survivability after 16 weeks. Sclerotia survived almost 80–90% in moist soil (50–55% m.h.c.) kept for 16 weeks at 26°C or in moist soil exposed to four cycles each having 3-week thawing (26°C) and 1-week freezing (?5°C).     

Effect of fallow improvement on the nematode community in the Sudanian region of Senegal

A 4-year trial was conducted in the Sudanian area of Senegal to study how the manipulation of the plant composition of a natural fallow might increase soil fertility. The influence of fencing combined with stump removal or planting of Andropogon gayanus on the nematode communities was studied. Apart from fencing, all intervention favoured the multiplication of the plant parasitic nematodes for the duration of the trial. Fencing significantly reduced nematode abundance and modified the balance between the species in the community. The population of Scutellonema cavenessi, a serious pest of food crops in the region, was dramatically reduced to the benefit of the weaker pathogen, Helicotylenchus dihystera. Planting Andropogon increased the H. dihystera population slightly. Disappearance of ligneous plant material by stump removal was associated with the greatest increase in the proportion of S. cavenessi. The results suggested that the soil disturbance when planting, removing stumps, or even grazing could affect the nematode community in the topsoil layer, resulting in a decrease in H. dihystera. This species did not recover during a 4-year fallow, even if a suitable situation was promoted through fencing or the planting of Andropogon, a host plant of H. dihystera.     

Effect of biochar amendment on water infiltration in a coastal saline soil

Purpose

Increasing data have shown that biochar amendment can improve soil fertility and crop production, but there is little knowledge about whether biochar amendment can improve water infiltration in saline soils. We hypothesized that biochar amendment could promote water infiltration in saline soil. The aims of this study were to evaluate the effects of biochar amendment on water infiltration and find the suitable amendment rate and particle size of biochar as a saline soil conditioner.

Materials and methods

We measured water infiltration parameters in a coastal saline soil (silty loam) amended with non-sieved biochar at different rates (0.5, 1, 2, 5, and 10%, w/w) or sieved biochar of different particle sizes (≤?0.25 mm, 0.25–1 mm, and 1–2 mm) at 1 and 10% (w/w).

Results and discussion

Compared with the control, amending non-sieved biochar at 10% significantly decreased water infiltration into the saline soil (P?<?0.05). In contrast, sieved biochar of ≤?0.25 mm significantly improved water infiltration capacity, irrespective of the amendment rate. Sieved biochar of 1–2 mm was less effective to improve soil porosity and when amended at 10%, it even reduced the water infiltration capacity. The Philip model (R²?=?0.983–0.999) had a better goodness-of-fit than the Green-Ampt model (R²?=?0.506–0.923) for simulation of cumulative infiltration.

Conclusions

Amending biochar sieved to a small particle size improved water infiltration capacity of the coastal saline soil compared with non-sieved biochar irrespective of the amendment rate. This study contributes toward improving the hydrological property of coastal saline soil and rationally applying biochar in the field.

     

Long-term experimental warming reduces soil nematode populations in the McMurdo Dry Valleys, Antarctica

Climate models predict significant future warming in polar regions. In the McMurdo Dry Valleys, Antarctica, projected summer climate warming is expected to increase snow and glacial melt, resulting in higher stream discharge, rising lake levels, and an increase in areas of moist soil, but the potential influence of warming and associated changes in hydrology on the soil ecosystem is poorly understood. To examine the effects of soil warming and changes in the availability of liquid water on populations of soil invertebrates and their habitat, we established a full-factorial warming and water addition experiment at one experimental site in each of the three hydrologic basins of Taylor Valley, Antarctica, and measured responses over 8 years. We hypothesized that an increase in temperature and moisture together would enhance habitat suitability for soil invertebrates thereby increasing abundance, biomass and diversity of the soil animal communities. Instead, warming treatments had an overall negative effect on density and body size of the microbial-feeding nematode Scottnema lindsayae, the dominant animal in the dry valleys, which decreased by 42% in warmed plots. While experimental moisture additions as a single annual pulse had no effect on nematodes, the surface flooding of one site from rapid melting of upslope subsurface ice (the result of an unusual natural warming event) drastically altered soil moisture, salinity, and animal communities; mortality of S. lindsayae increased and densities decreased. This extreme soil wetting event also resulted in an increase in chlorophyll a and populations of Eudorylaimus spp, a nematode species that prefers moist to wet habitats and feeds on soil micro-algae. Our results suggest that warming in the dry valleys could significantly affect soil nematode populations and species composition both directly and indirectly by altering species-specific habitat suitability for soil biota.     

Identification and localization of food-source microbial nucleic acids inside soil nematodes

Microorganisms (e.g., prokaryotes, fungi) are food sources for soil nematodes, but they can also be potential mutualists or pathogens. Understanding the linkages between microorganism and invertebrate diversity in soils requires the ability to distinguish between these microbial roles. We tested the potential of a taxon-specific fluorescent in situ hybridization (FISH) procedure for identifying and localizing microbial rRNA within the bodies of soil nematodes. Our objective was to determine whether the rate of digestion permitted detection and identification of food-source nucleic acids within the nematode digestive system (i.e., pharynges, intestines) before their breakdown. First, using laboratory cultures of Caenorhabditis elegans maintained on Escherichia coli, we were able to localize bacterial rRNA throughout the nematode pharynx with the universal bacterial-probe EUB338, although never in the intestines. Second, we applied the fungal rRNA probe FR1 to Aphelenchus avenae cultured on the fungus Rhizoctonia solani. We were unable to detect fungal rRNA within these nematodes, and it appears that this material may be digested rapidly. Next, we applied our technique to nematodes extracted directly from soils. We were able to localize bacterial rRNA within the pharynges of bacterial-feeding species of nematodes from desert soils. We also localized archaeal rRNA using the probe ARC344. Finally, application of EUB338 to desert soil nematodes revealed the presence of bacteria in the intestines of some nematodes and within the ovary of a single nematode. This technique has great potential for use in understanding the feeding behavior of bacterial-feeding soil nematodes and in studies of nematode:bacterial relationships.