Sire evaluation for type traits with linear and non-linear procedures

Breeding values of dairy sires for some categorically scored type traits were predicted by BLUP and by a non-linear procedure called GFCAT, which is based on the threshold concept and takes the categorical nature of the data into account.Comparisons of the two procedures were made by product-moment correlations between breeding values predicted by the two procedures. The correlations were very high and in the range 0.998–0.999. Reasons for the close relationship between the breeding values predicted by the two procedures are discussed.It was concluded that it was not worth the extra computational costs to use the non-linear procedure for the actual data. This conclusion may well be different for other traits, other designs or other modes of classification.     

Genotype by climate interaction in the genetic evaluation for growing traits of Braunvieh cattle in Mexico

The objective of this study was to determine the magnitude of genotype by climate interaction (GCI) in the national genetic evaluation for weaning (WW) and yearling (YW) weights of Mexican Braunvieh cattle. The numbers of performance records and animals in the pedigree were 12,364 and 25,173 for WW, and 7,991 and 18,072 for YW, respectively. Performance records were clustered based on climatological variables into: dry tropic (DT), wet tropic (WT), and temperate (TE) climates. Animal models were used to estimate genetic parameters and predict breeding values in each of the climates. Bivariate analyses were carried out for pairwise combinations of climates on each trait, considering the same trait in different climates as a different trait. Criteria to evaluate GCI were genetic correlations (r _g), correlations between predicted breeding values (r _BV), and frequencies of coincidence (FC) in the ranking of the top 25 sires. Results of comparisons between pairs of climates were variable, depending on specific cases. For WW, the r _g, r _BV, and FC ranged from ?0.36 to 0.84, ?0.60 to 0.97, and 0.16 to 0.92, respectively; whereas for YW, they fluctuated between 0.23 and 0.99, 0.33 and 1.00, and 0.60 and 1.00, respectively. For both traits, the results suggest absence of GCI between DT and TE; however, GCI was detected in the other pairs of climates, where WT was involved. To maximize genetic progress, the joint genetic evaluation should be performed only for animals with performance data in DT and TE, whereas a separated evaluation is suggested for animals with performance records generated under WT conditions.     

Conjunctival changes in a Swiss Braunvieh heifer with malignant lymphoma

This report describes a 2.8-year-old Swiss Braunvieh heifer with conjunctival changes as the lead clinical signs of malignant lymphoma. The heifer was referred to our clinic because of conjunctivitis that did not respond to treatment with antibiotics. The patient had bilateral lacrimation, severe swelling of the third eyelids and prolapse of the conjunctivae, which were erythematous and covered with haemorrhagic crusts. A clinical examination revealed enlarged prescapular and prefemoral lymph nodes. Based on cytological examination of a fine needle aspirate from a prescapular lymph node, a tentative diagnosis of malignant lymphoma was made. The heifer was euthanased and a postmortem examination carried out. The conjunctival lesions consisted of diffuse multifocal nodules of varying size. There was generalised lymphadenopathy and beige nodules were seen in several internal organs. Histological and immunohistological examinations confirmed the diagnosis of multicentric leukosis characterised by T-cell lymphoblasts, which had also infiltrated the conjunctivae. Examination of a blood sample for enzootic bovine leukosis virus yielded a negative result.     

Diabetes insipidus in a Swiss Braunvieh heifer with internal hydrocephalus

This case report describes the findings in a seven-month-old heifer with diabetes insipidus attributable to internal hydrocephalus. The heifer was referred to the clinic because of reduced appetite, polydipsia, decreased faecal output and weight loss. The heifer was examined daily for 8 days. She was thin and weak and had a dull dry hair coat and decreased appetite. The heifer urinated frequently; the urine was clear and yel low, had a specific gravity of 1.015. A complete blood cell count, biochemical profile and blood gas analysis revealed increased serum urea, increased serum creatinine, hypernatraemia, hyperchloraemia, hypercalcaemia and hypophosphataemia. The heifer received 10 litres of water and 3 litres of ruminal fluid from a healthy cow per os daily for 5 days. The heifer had access to fresh water ad libitum. The general condition of the heifer did not improve after this treatment. Although the concentration of serum urea and creatinine decreased, the concentrations of sodium, chloride and calcium remained higher than normal. Based on the findings, a diagnosis of diabetes insipidus was made and the heifer was euthanatized. Postmortem examination revealed severe internal hydrocephalus, and a definitive diagnosis of central diabetes insipidus attributable to internal hydrocephalus was made.     

Spinal muscle atrophy in Brown Swiss x Braunvieh cross calves]

The report describes seven SMA-cases in descendents of crossbreeds of American Brown Swiss x Deutsches Braunvieh. Symptoms and course: After initially normal development of the calves for one to six weeks the disease set in suddenly followed by a rapid lethal course of one to one and a half weeks duration due to asphyxia and/or secondary diseases. Only one case was reported having been sick since birth (?). Characteristic signs were rapidly progressing muscular atrophy, paresis and paralysis of the limbs, the trunk and the diaphragm, usually accompanied by progressive dyspnoea. Signs of congenital neuromyodysplasia (arthrogryposis) of different degree were present in four of the seven calves. Six calves had contracted a secondary pneumonia. Blood gas analysis (6/7) revealed a compensated (1x) or decompensated (4x) respiratory acidosis. Neurohistological findings: Degeneration and loss of motor neurons in the ventral horns of the spinal cord and neurogenic muscular atrophy. Immunohistochemistry revealed a pronounced accumulation of type 200 kD-neurofilaments in perikarya and dendrites of ventral horn motoneurons indicating disturbed mechanisms of the axonal transport. The disease seems to be inherited as a recessive trait.     

The interrelationships between milkability traits and subclinical mastitis in cows

The investigation was conducted during 2005-2006 on 4010 dairy cows. Having performed statistical data analysis, we determined that the lowest somatic cell count (SCC) in Red and Red-White cow population was obtained when the milking time was 5-6 min., milking speed was higher than 1.5 kg/min., high milk flow was from 2.51 to 4 kg/min., and in Black-White cow population having a milking time was higher than 7 min., milking speed was from 1.01 to 2 kg/min., a high milk flow --from 2.01 to 4 kg/min. (p<0.001). In Red and Red-White cow population with subclinical mastitis, milking time was longer and milking speed was slower than in healthy cows. High milk flow values were least in healthy Black-White cow population. This determines a more equal milk flow which is desired in milking cows mechanically. Most sensitive to udder infection are 1st lactation cows which have a higher milk flow. A larger phenotype correlation coefficient in Red and Red-White cow population was between the SCC and milking time (-0.089, p<0.01) and between high milk flow (0.086, p<0.01) and milk yield (-0.071, p<0.05). However in Black-White cow population, correlation was found between SCC and milk yield (-0.117, p<0.01) and milking speed (-0.110, p<0.01). Contagious mastitis pathogens were identified in Red and Red-White cow milk samples primarily from productive cows having a milking speed of 1.01-1.5 kg/min., and in Black-White cow population having a milking speed of 1.51-2.0 kg/min.     

Genetic associations of in-line recorded milkability traits and udder conformation with udder health

Milkability and udder conformation traits of Swedish Holstein (SH) and Swedish Red (SR) cows from 93 herds with automatic milking systems or conventional milking parlors were used to study genetic relationships to lactation average somatic cell score (LSCS) and incidence of clinical mastitis (CM). Estimated genetic correlations between measures of milking speed (average flow rate, milking time and box time) and LSCS ranged between 0.29 and 0.57 and showed that high milking speed is associated with increasing LSCS. Regressions indicated a curvilinear relationship. Genetic correlations between milking speed and CM showed similar values as for LSCS in SH cows, but were inconsistent in SR cows. Shallow udder and strong fore udder attachment were consistently correlated with good udder health. The unfavorable relationships between milking speed and udder health traits should be considered together with a few udder conformation traits when selecting for better milkability.     

Genetic parameters for semen production traits in Swiss dairy bulls

Variance components (VC) were estimated for the semen production trait ejaculate volume, sperm concentration and sperm motility in the Swiss cattle breeds Brown Swiss (BS), Original Braunvieh (OB), Holstein (HO), Red‐Factor‐Carrier (RF), Red Holstein (RH), Swiss Fleckvieh (SF) and Simmental (SI). For this purpose, semen production traits from 2,617 bulls with 124,492 records were used. The data were collected in the years 2000–2012. The model for genetic parameter estimation across all breeds included the fixed effects age of bull at collection, year of collection, month of collection, number of collection per bull and day, interval between consecutive collections, semen collector, bull breed as well as a random additive genetic component and a permanent environmental effect. The same model without a fixed breed effect was used to estimate VC and repeatabilities separately for each of the breeds BS, HO, RH, SF and SI. Estimated heritabilities across all breeds were 0.42, 0.25 and 0.09 for ejaculate volume, sperm concentration and sperm motility, respectively. Different heritabilities were estimated for ejaculate volume (0.42; 0.45; 0.49; 0.40; 0.10), sperm concentration (0.34; 0.30; 0.20; 0.07; 0.23) and number of semen portions (0.18; 0.30; 0.04; 0.14; 0.04) in BS, HO, RH, SF and SI breed, respectively. The phenotypic and genetic correlations across all breeds between ejaculate volume and sperm concentration were negative (?0.28; ?0.56). The other correlations across all breeds were positive. The phenotypic and genetic correlations were 0.01 and 0.19 between sperm motility and ejaculate volume, respectively. Between sperm motility and sperm concentration, the phenotypic and genetic correlations were 0.20 and 0.36, respectively. The results are consistent with other analyses and show that genetic improvement through selection is possible in bull semen production traits.     

Biphasic mesothelioma in a Swiss Braunvieh cow: clinical, histological, immunohistochemical and electron microscopical findings

A 10-year-old Swiss Braunvieh cow near term was referred to our clinic because of severe abdominal distension, which caused loss of demarcation between the udder and ventral abdominal wall. Ultrasonographic examination revealed marked ascites and multiple echogenic nodules in the greater omentum. Based on the findings, non-inflammatory ascites attributable to neoplasia was diagnosed. Rupture of the prepubic tendon from the pubic symphysis was also suspected. Because of a grave prognosis, parturition was induced and a live calf was delivered. The cow was euthanized and a postmortem examination was carried out. The abdominal cavity contained 248.5 litres of clear fluid. The greater omentum was thickened and oedematous and regionally contained fluid-filled cystic structures, which varied in size with a maximum diameter of 10 centimetres. Based on the histological, immunohistochemical and electron microscopical findings, biphasic mesothelioma with cyst formation affecting the entire abdominal cavity was diagnosed.     

Spinal muscular atrophy in Braunvieh calves]

Clinical, neurophysiological and histopathological findings of sixteen cases of spinal muscular atrophy in calves are described. The first clinical signs usually were noticed at 2-6 weeks of age. The animals showed weakness in the hindquarters, trembling and ultimate recumbency. There was a marked muscular atrophy in all four extremities. In addition, secondary bronchopneumonia was evident in 11 cases. Histopathological lesions consisted of degenerative changes in the neurons of the ventral horns and the axons of the spinal cord as well as degeneration of nerve axons in the extremities. Neurophysiological measurements revealed spontaneous activity in the muscles of the limbs. The conditions is autosomal recessive. So far 11 bulls have been identified and excluded from breeding.     

Screening genetic diseases prevalence in Braunvieh cattle

Tropical Animal Health and Production - Heritable abnormalities can cause a reduction in productive performance, structural defects, or death of the animal. There are reports of hereditary...     

Estimates of genetic parameters for milkability from automatic milking

Genetic parameters were estimated by restricted maximum likelihood with a multi-trait animal model for three milkability traits with serial data from an automatic milking system from a research farm (401 dairy cows) collected between September 2000 and June 2003 (320834 milkings). Furthermore, daily values for milk yield and milkability were formed from all single milkings resulting in 104 132 records and, subsequently, an estimation of genetic parameters was carried out based on these daily values.The resulting estimated heritability coefficients (based on daily values) are h² = 0.55, h² = 0.55 and h² = 0.39 for average milk flow, maximum milk flow and milking time, respectively. The heritabilities are at a high level and thus breeding for good milkability makes sense. The genetic correlations between the three milkability traits are near unity with r_g = 0.98 between average and maximum milk flow, r_g = − 0.89 between average milk flow and milking time and r_g = − 0.86 between maximum milk flow and milking time. Thus it may be sufficient to record only one of these traits in performance tests. The genetic correlations between milk yield and average milk flow, maximum milk flow and milking time are r_g = 0.51, r_g = 0.44 and r_g = − 0.23, respectively.In future, serial data on milkability, already existing on many farms with automatic milk yield recording, should be used to greater extent for selective breeding with the aim of achieving good milkability.     

Genetic and phenotypic parameters for conformation and yield traits in three Swiss dairy cattle breeds

This study presents genetic parameters for conformation traits and their genetic and phenotypic correlations with milk production traits and somatic cell score (SCS) in three Swiss dairy cattle breeds. Data on first lactations from Holstein (67 839), Brown Swiss (173 372) and Red & White breeds (53 784) were available. Analysed conformation traits were stature and heart girth (both in cm), and linear scores of body depth, rump width, dairy character or muscularity, and body condition score (only in Holstein). A sire model, with relationships among sires, was used for all breeds and traits and variance components were estimated using AS‐REML. Heritabilities for stature were high (0.6–0.8), and for the linear type traits ranged from 0.3 to 0.5, for all breeds. Genetic correlations with production traits (milk, fat and protein yield) and SCS differed between the dairy breeds. Most markedly, stronger correlations were found between SCS and some conformation traits in Brown Swiss and Red & White, indicating that a focus on a larger and more ‘dairy’ type in these breeds would lead to increased SCS. Another marked difference was that rump width correlated positively with milk yield traits in Holstein and Red & White, but negative in Brown Swiss. Results indicate that conformation traits generally can be used as predictors for various purposes in dairy cattle breeding, but may require specific adaptation for each breed.     

Genomic evaluation for novel stayability traits in Nellore cattle

Cow stayability plays a major role on the overall profitability of the beef cattle industry, as it is directly related to reproductive efficiency and cow's longevity. Stayability (STAY63) is usually defined as the ability of the cow to calve at least three times until 76 months of age. This is a late-measured and lowly heritable trait, which consequently constrains genetic progress per time unit. Thus, the use of genomic information associated with novel stayability traits measured earlier in life will likely result in higher prediction accuracy and faster genetic progress for cow longevity. In this study, we aimed to compare pedigree-based and single-step GBLUP (ssGBLUP) methods as well as to estimate genetic correlations between the proposed stayability traits: STAY42, STAY53 and STAY64, which are measured at 52, 64 and 76 months of cow's age, considering at least 2, 3 and 4 calving, respectively. ssGBLUP yielded the highest prediction accuracy for all traits. The heritability estimates for STAY42, STAY53, STAY63 and STAY64 were 0.090, 0.151, 0.152 and 0.143, respectively. The genetic correlations between traits ranged from 0.899 (STAY42 and STAY53) to 0.985 (STAY53 and STAY63). The high genetic correlation between STAY42 and STAY53 suggests that besides being related to cow longevity, STAY53 is also associated with the early-stage reproductive efficiency. Thus, STAY53 is recommended as a suitable selection criterion for reproductive efficiency due to its higher heritability, favourable genetic correlation with other traits, and measured earlier in life, compared with the conventional stayability trait, that is STAY63.     

Genetic evaluation strategies for multiple traits and countries

Genetic evaluation strategies were studied using simulated data for three lactation traits in each of two importing and two exporting countries, each running a typical progeny test program. Conversion (CNV), multiple-trait across-country evaluation (MACE) and global animal model (GAM) strategies were considered. Base populations were either unselected, or all males were above average, and exporting countries had higher genetic means than importing countries. With unselected base populations, errors of prediction (ERP) for top (highest predicted merit) bulls were equivalent (P>0.10) for MACE and GAM strategies and higher for CNV (P<0.01), while GAM had lower ERP (P<0.01) for all bulls. With selected base populations, MACE strategies had lower ERP than GAM for top bulls (P<0.01) and lower but similar ERP (P>0.05) for all bulls. Strategies to evaluate multiple traits per country consistently had lower ERP than strategies evaluating one trait per country. Evaluations were biased, favouring bulls from importing countries on foreign scales of evaluation, for all strategies and with either selected or unselected base populations. True merits of top bulls selected with MACE or GAM were similar (P>0.05) and greater than CNV (P<0.01), and 90-95% of the top 1% selected bulls were the same for multiple-trait MACE and GAM strategies.     

Sire x herd interactions for weaning weight in beef cattle.

Weaning weight records of 44,357 Australian Angus calves produced by 1,020 sires in 90 herds were used to evaluate the importance of sire x herd interactions. Models fitted fixed effects of contemporary group (herd-year-date of weighing subclass), sex, calf age, and dam age and random effects of sire or of sire and sire x herd interaction using REML. Effects of standardizing the data, including sire relationships and including dam maternal breeding values (MBV) as a covariate were also investigated. Sire x herd interactions were found (P less than .05) in all cases and, in the most complete model, accounted for 3.3% of phenotypic variance. Across-herd heritabilities ranged from .19 to .28. Differential nonrandom mating among herds seemed to occur in the data. Significant sire x herd effects were observed for dam MBV, and adjustment for dam MBV yielded the smallest estimates of interaction variance and across-herd heritability. If sire x herd interactions were due only to genotype x environment interaction, within-herd heritabilities would range from .33 to .49. These estimates are larger than previously reported estimates. Thus, unreported environmental effects common to progeny of individual sires may also be involved in the observed interaction but could not be disentangled from true genotype x environment interaction effects using these data. Results of these analyses suggest that some accommodation of sire x herd interaction effects on weaning weight may be needed in beef cattle genetic evaluations, but a compelling case for development of herd-specific breeding value prediction cannot be made.     

Development of genetic evaluation for milk production traits of Holsteins in Japan

The procedure used for the genetic evaluation of dairy cattle in Japan has developed from a lactation sire–MGS model to a multiple‐lactation random regression test‐day animal model. Genetic evaluation of Holstein bulls in Japan began in 1989 with the use of field‐style progeny testing; dairy herd improvement program data from all over Japan were used, along with a sire and maternal grandsire model. In 1993, an animal model was introduced to estimate breeding values for yield and type traits. A random regression test‐day model was first applied in 2010. In the business of breeding dairy cattle, it is very important to users that estimated breeding values are reliable and stable among subsequent routine evaluations. With experience in the genetic evaluation of dairy cattle in Japan, Japanese researchers have found ways to improve the stability of estimated breeding values. These modifications involve changes in data editing, development of evaluation models, changes to the structures of unknown‐parent groups, awareness of the problems of predicting lactation yield from partial test‐day records, and adjustment for heterogeneity within herd variances. Here, I introduce developments in, and our experiences with, the genetic evaluation of yield traits of Holstein cattle in Japan.