Dynamics of the methanogenic archaeal community in anoxic rice soil upon addition of straw

Addition of rice straw, which is a common practice in rice agriculture, generally results in enhanced production and emission of the greenhouse gas methane (CH₄). However, it is unclear whether straw addition affects only the activity or also the composition of the methanogenic microbial community. It is also unclear to what extent methanogenic archaea would be able to proliferate in the soil. Anoxic slurries of Italian rice‐field soil produced CH₄ after a lag, during which ferric iron and sulfate were reduced. Addition of rice straw slightly decreased this lag and greatly enhanced the subsequent production of CH₄. At the same time, addition of rice straw enhanced the intermediate production of H₂ and acetate that served as the methanogenic substrates. Compared with the unamended control, the addition of rice straw resulted in an increased concentration of phospholipid fatty acids in the soil. Quantitative ‘real‐time’ PCR targeting the 16S rRNA gene also showed increased copy numbers of both Bacteria and Archaea in the straw‐amended soil at the end of the experiment. The composition of the archaeal community was followed over time by terminal restriction length polymorphism (T‐RFLP) analysis of the archaeal 16S rRNA genes extracted from straw‐amended soil and the control. Rice Cluster‐I (RC‐I) methanogens and Methanosarcinaceae were the most abundant methanogenic populations, followed by Methanobacteriales, Methanomicrobiales and Methanosaetaceae. Addition of rice straw resulted in a relative increase of Methanosarcinaceae and Methanobacteriales and a relative decrease of RC‐I methanogens and Methanomicrobiales. Our results revealed a dynamic methanogenic community in anoxic rice‐field soil and showed that addition of organic matter selectively enhanced the growth of particular methanogenic populations, which were apparently better adapted to the presence of straw than the others. The extent of archaeal growth was consistent with that expected theoretically from the ambient Gibbs free energies of hydrogenotrophic and acetoclastic methanogenesis.     

Soil purple phototrophic bacterial diversity under double cropping (rice‐wheat) with free‐air CO2 enrichment (FACE)

Soil purple phototrophic bacterial (PPB) communities and their responses to elevated atmospheric carbon dioxide (CO₂) concentration and nitrogen (N) fertilizer were investigated under a rotation of paddy rice (Oryza sativa L.) and winter wheat (Triticum aestivum L. cv. Yangmai 14) cultivation in a FACE (free‐air CO₂ enrichment) system. Community structures and abundances of PPB were determined by denaturing gradient gel electrophoresis (DGGE) and real‐time quantitative PCR respectively, targeting the pufM gene, which encodes a protein in the light reaction centre of PPB. Soil PPB communities were more diverse and larger under rice than under wheat cultivation, which may be attributed to the flooding of the paddy field and soil moisture changes. Elevated atmospheric CO₂ concentration significantly increased the abundance and biodiversity of PPB in soils under rice cultivation, while N fertilizer application rate had less effect on the abundance and diversity. Phylogenetic analysis showed that two common dominant DGGE bands belonged to Bradyrhizobium‐ and Rhodopseudomonas palustris‐like PPB in both rice and wheat soils. The results demonstrated a significant shift in soil PPB communities during the rice‐wheat rotation, and a strong positive response of PPB communities to an elevated atmospheric CO₂ concentration. Our results also indicated that a diverse and abundant soil PPB community could occur in upland crop fields as well as in aquatic environments and paddy‐rice fields. These findings extend our understanding of the ecological significance of PPB in terrestrial soil environments and their responses to future climate change.     

Nitrogen use efficiency of microalgae application in wheat compared to mineral fertilizer

Background

Wastewater from sewage treatment plants contains high levels of nutrients, which can be used for plant nutrition. Classical wastewater treatment plants use complex microbial consortia of autotrophic and heterotrophic microorganisms for biological wastewater treatment. Certain autotrophic microalgae (e.g., species of the genera Chlorella, Scenedesmus, and Pediastrum) accumulate nutrients from wastewater very effectively.

Aims

We investigated the potential of microalgae biomass obtained from a prototype wastewater treatment plant as a source of nutrients for crops, focusing on nitrogen.

Methods

We provided wheat plants with different levels of algae biomass equivalent to 60, 120, and 180 kg N per hectare or with mineral fertilizer (N, P, and K) equivalent to the amounts contained in the algal biomass. Physiological and phenotypic traits were measured during growth, including vegetation indices, photosynthetic performance, growth, and nitrogen use efficiency (NUE). In addition, the adundances of Bacteria, Archaea and fungi and genes of ammonium oxidizing Bacteria and Archaea were determined in the rhizosphere of differently fertilized plants.

Results

Microalgal application at fertilizer levels of 120 and 180 kg N ha^–1 showed significantly improved physiological performance, growth, yield and nutrient uptake compared to the unfertilized control. Nevertheless, their yields and NUE were lower than with the application of equal amounts of mineral fertilization, while the adundance of rhizosphere microbes and ammonia-oxidizing microorganisms were not significantly affected.

Conclusions

Microalgae from wastewater treatments form a suitable source of organic fertilizer for wheat plants with only moderate reductions in N use efficiency compared to mineral fertilizer.     

Multivariate analysis of soils: microbial biomass,metabolic activity,and bacterial‐community structure and their relationships with soil depth and type

A multivariate statistical approach based on a large data set of abiotic and biotic variables was used to classify four contrasting‐land‐use soils. Soil samples were collected at increasing depth from a calcareous agricultural soil, a temperate upland grassland soil, a moderately acidic agricultural soil, and an acidic pine forest soil. Analytical investigations were carried out by using a combination of conventional physical, chemical, and biochemical methods coupled with denaturing gradient gel electrophoresis (DGGE) community fingerprinting of PCR‐amplified 16S rRNA gene‐coding fragments from soil‐extracted total‐community DNA. The data set of soil physical, chemical, and biochemical variables was reduced in dimensionality by means of a principal‐component‐analysis (PCA) procedure. Compositional shifts in soil bacterial‐community structure were analyzed through a clustering algorithm that allowed identifying six main bacterial‐community clusters. DGGE fingerprinting clusters were further analyzed by discriminant analysis (DA) using extracted PCA components as explanatory variables. Soil organic matter–related pools (TOC, TN) and functionally related active pools (microbial biomass C and N, K₂SO₄‐extractable C) significantly decreased with soil depth, and resulted statistically linked to one other and positively related to enzymatic activities (acid phosphatase, arylsulfatase, β‐glucosidase, dehydrogenase, hydrolysis of fluorescein diacetate) and silt content. Besides organic‐C gradients, pedogenetic‐driven physico‐chemical properties, and possibly soil thermal and moisture regimes seemed to play a key role in regulating size and energetic ecophysiological status of soil microbial communities. DGGE analysis showed that contrasting horizons were conducive to the dominance of particular bacterial ribotypes. DA revealed that the bacterial‐community structure was mainly influenced by organic matter–related variables (TOC, TN, CEC, C_flush, N_flush, Extr‐C), chemical properties such as pH, CaCO₃, and EC, together with textural properties. Results indicate that, beyond land use or plant cover, pedogenetic‐driven physico‐chemical conditions changing with soil type and depth are the key factors regulating microbial size and activity, and determining the genetic structure of bacterial community.     

Differences in nitrogen‐assimilating enzyme activity in halophyte species are habitat‐related

The chemical form and content of available nitrogen (N) in salt marsh substrates varies considerably. On the western coast of Ireland, habitats designated as Ombrogenic Atlantic salt marshes were formed on ombrogenic peat substrate. The peat substrate in these systems has three times more ammonium than substrate from adjacent salt marsh habitats on sand and mud substrate. This study examined the extent to which the high concentration of ammonium in peat salt marsh substrate influences the N‐ assimilating enzyme activity of halophytes and the extent to which N metabolism differs between species. Specifically, this work investigated whether plants from peat salt marshes are more likely to assimilate ammonium than plants from non‐peat substrates. Four halophyte plant species—Armeria maritima, Aster tripolium, Plantago maritime, and Triglochin maritime—were sampled from various saltmarsh habitats including three sites on peat substrate and three on non‐peat substrate, comprising sand, mud and sand/mud. The activities of N‐metabolising enzymes—glutamine synthetase (GS), glutamate synthase, glutamate dehydrogenase (GDH), and nitrate reductase (NR)—were quantified in shoot and root parts. Root GS activity in Armeria maritima and shoot GS activity in Triglochin maritima were positively correlated with increasing soil ammonium levels. Root NR activity in Aster tripolium and shoot NR activity in Plantago maritima were significantly higher in plants grown on non‐peat substrates than peat substrates. The shoot : root GS activity ratio in Triglochin maritima on peat substrate was more than double the ratio on non‐peat substrates. It is concluded that all species tested displayed differences in N‐metabolising activities depending on the chemical form and/or concentration of N in the substrate, while three out of the four species were capable of taking advantage of the high levels of ammonium in peat substrates.     

Rheological‐stiffness analysis of K+‐treated and CaCO3‐rich soils

Rheological methods are applied whenever flow behavior of substances needs to be investigated on a particle‐to‐particle scale executed by a parallel‐plate rheometer. Under oscillation, mechanical effects due to trafficking or vibrations caused by agricultural and forest machinery can be simulated by conducting amplitude‐sweep tests. Hooke's law of elasticity, Newton's law for ideal fluids (viscosity), Mohr‐Coulomb's equation, and, finally, Bingham's yielding are well‐known relationships and parameters in the field of rheology. This paper aims to introduce rheometry as a suitable method to determine the mechanical behavior of salt‐affected soils when subjected to external stresses. Potassium‐treated loamy sand from Halle and loamy silt from Kassel, both sites located in Germany, as well as loess from Israel, saturated with NaCl solutions in several concentrations were analyzed. From the stress‐strain–relationship parameters like the storage modulus G′ and the loss modulus G″, yield stress τ_y and the linear viscoelastic (LVE)–deformation range including the deformation limit γ_L, i.e., the transition from an elastic to a viscous state, were determined and calculated, respectively. With respect to salt effects, amplitude‐sweep tests on originally CaCO₃‐rich Avdat Loess show an increasing stability if saturated with higher NaCl concentrations. Comparable tests with K⁺‐rich substrates from Halle and Kassel evinced similar tendencies including the phenomenon of a critical K⁺ content, which becomes more obvious in case of the drained (–60h Pa) loamy‐silt samples from Kassel. Nevertheless, a higher microstructural stability is given in both substrates from Halle and Kassel, affected by different water contents, in general, which influence the exchange and availability of cations. The results verify that oscillatory tests are applicable for retracing salt‐induced effects, beside those ones, which are influenced by texture, current water content, and/or further chemical parameters.     

Boron‐and‐salt interactions in wheat are affected by boron supply

Plants in arid or semiarid areas often experience simultaneous salt and boron (B) stress. Interactive effects on stress responses have been clearly established, but results are inconsistent and variably indicate antagonistic or synergistic interactions even within the same plant species. In this study, five differently B‐ and salt‐resistant wheat genotypes were grown hydroponically at low and high B supply. The effect of increasing NaCl salinity on plant growth, boron uptake rates, shoot B concentrations, and transpiration was determined under both B regimes. The interactive effect of salt and B was different under low and high B supply. Boron‐uptake rates were reduced with increasing salt concentration only under high B supply, and reductions correlated significantly with decreases in leaf area and shoot B concentrations. Under low B supply, however, salt‐induced effects on B‐uptake rates were variable and not significantly correlated with leaf‐area reductions. These results suggest that under high B supply, when B uptake is predominantly passive by diffusion or channel‐mediated via aquaporins, transpiration‐driven water flow is the dominant factor for B accumulation in arial plant parts. Under low B supply, when a significant portion of B can be taken up via active pathways, transpiration is not the decisive factor for B accumulation. Under these conditions, the salt sensitivity of a genotype is a modifying factor of salt–B interactions, because salt‐induced growth inhibition can result in a concentration effect, offset the reduction of B‐uptake rates, and result in increased shoot B concentrations. Contradictory reports on the nature of salt–B interactions might in part be related to low levels of B supply chosen as control treatments and concomittant differences in predominant B‐uptake pathways.     

Genetic variability for responses to short‐ and long‐term salt stress in vegetative sunflower plants

Sunflower (Helianthus annuus L.) has been rated as moderately salt‐resistant, and variability for salt resistance has been detected within this crop. However, variability in salt‐resistance mechanisms has not been assessed. Osmotic tolerance, the relation of salt resistance with whole‐plant Na⁺ and K⁺ distribution and tissue Na⁺ tolerance were investigated in several sunflower inbred lines. Plants were grown under controlled conditions, in pots with sand and perlite irrigated with salinized (NaCl, –0.65 MPa) nutrient solution. Osmotic tolerance was assessed from the initial effects of the salt treatment on plant elongation in eleven sunflower lines. Long‐term salinity responses were evaluated in four of those lines, by assessing whole‐plant growth. A principal components analysis (PCA) was run on relative‐to‐control growth data, and this information was used to establish a relative resistance ranking, which indicated lines HAR2 > HAR1 > HA64 > HAR5. Osmotic tolerance was observed in HA64 and HAR2. The lines showed different degrees of Na⁺ accumulation, it was very low in some of them, but relative salt resistance was not associated to this trait. Tissue Na⁺ tolerance was deduced by comparing the percentage of dead leaves as a function of leaf blade Na⁺ accumulation, and it was higher in HAR1 than in the rest. These results indicate that variability for salt‐resistance mechanisms exists in sunflower. Osmotic tolerance and tissue Na⁺ tolerance were detected in different lines, highlighting that such variability may be exploited for increasing salt resistance in this crop.     

Diversity of total,nitrogen‐fixing and denitrifying bacteria in an acid forest soil

To assess the diversity of total, denitrifying and N₂‐fixing bacteria in a nitrogen (N)‐limited, acid forest soil, isolated DNA was analysed for the genes 16S rRNA, nosZ and nifH. Sequence information for these genes was obtained from clone libraries and from our TReFID computer program, which employs terminal restriction patterns for bacteria using multiple restriction enzymes. Both approaches indicated that Proteobacteria (α‐ and γ‐groups) and Acidobacteria dominated. A comprehensive list of bacteria retrieved from this soil is provided and compared with literature data on the bacterial community compositions from other sites. The study indicated that the current PCR conditions with the primers employed allowed retrieval of only a portion of the bacteria occurring in soils. Massive treatment of a soil plot with NH₄NO₃ caused an increase in the N content, which was rapidly followed by an enhancement of carbon (C) content. Thus the C/N ratio stayed below 16.0 and the soil remained N‐limited. This may explain why the bacterial diversity did not undergo drastic shifts as was tentatively inferred from the available data sets.     

Effects of nitrate‐, ammonium‐, and organic‐nitrogen‐based fertilizers on growth and yield of tomatoes

Mineral and organic fertilizers contain different forms and amounts of nitrogen (N), which can affect yield and product quality. The aim of this study was to determine appropriate amounts of N applied as nitrate (NO ), ammonium (NH ), and organic N (a mixture based on chicken manure) for optimal growth and quality of tomatoes. A pot experiment with sand as substrate was established in a greenhouse with six‐week‐old tomato plants (Lycopersicon esculentum Mill. cv. “Armada”). Nitrogen was applied in nutrient solutions at different NO : NH ratios combined with different chloride levels (NO ‐dominated, NO = NH at low Cl^–, NO = NH at high Cl^–, and NH ‐dominated, respectively) or as organic N at four N‐application rates (250, 500, 750, 1000 mg N plant^–1 week^–1). No significant differences in shoot biomass and yields of red tomatoes were observed between NO ‐ or NH ‐fed plants. Nitrogen rates above 750 mg N plant^–1 week^–1 did not significantly increase marketable fruit yield, but enhanced shoot‐biomass production. The NH ‐N‐dominated treatments (which also had high Cl^– concentrations) showed increasing incidence of blossom‐end‐rot (BER)‐infected fruits. In the organic‐N treatments, shoot‐biomass production and yields were lower than in the inorganic‐N treatments, but fruit quality was good with few BER‐infected fruits. The results show that with a total N supply below 750 mg N plant^–1 week^–1, NH can be used as equivalent N source to NO , resulting in equivalent yields of marketable fruit under the conditions in this experiment.     

Molecular characterization of methane-oxidizing bacteria associated with rice straw decomposition in a rice field

Abstract

Methane-oxidizing bacteria (MOB) are crucial to the reduction of CH₄ emitted to the atmosphere. However, it is unclear how MOB in rice straw are affected by straw decomposition processes. In a Japanese rice field, a year-round experiment was set up to study the effects of agricultural practice (rice cultivation/winter fallow), straw parts (leaf sheath/blade) and the site of straw placement (plow layer/soil surface) on MOB communities in rice straw using denaturing gradient gel electrophoresis (DGGE) and DNA sequencing analyses of key MOB functional genes (pmoA and amoA). Thirty-eight different DGGE bands were observed over the entire investigation period. Principal component analysis of DGGE pattern suggested that agricultural practice is the key factor regulating the MOB communities. Sequencing of dominant DGGE bands showed that: (1) during the rice cultivation period, methanotrophs (particularly type I methanotrophs) dominated the MOB community, (2) during the winter fallow season both type I and type II methanotrophs were dominant in sheath segments placed both on the soil surface and in the plow layer, whereas ammonia oxidizers seemed to dominate blade segments placed in the plow layer. Alignment of diagnostic amino acid sequences of MOB suggested the presence of novel ammonia oxidizers in rice straw in rice fields.     

Salt‐resistant and salt‐sensitive wheat genotypes show similar biochemical reaction at protein level in the first phase of salt stress

Salinity has a two‐phase effect on plant growth, an osmotic effect due to salts in the outside solution and ion toxicity in a second phase due to salt build‐up in transpiring leaves. To elucidate salt‐resistance mechanisms in the first phase of salt stress, we studied the biochemical reaction of salt‐resistant and salt‐sensitive wheat (Triticum aestivum L.) genotypes at protein level after 10 d exposure to 125 mM–NaCl salinity (first phase of salt stress) and the variation of salt resistance among the genotypes after 30 d exposure to 125 mM–NaCl salinity (second phase of salt stress) in solution culture experiments in a growth chamber. The three genotypes differed significantly in absolute and relative shoot and root dry weights after 30 d exposure to NaCl salinity. SARC‐1 produced the maximum and 7‐Cerros the minimum shoot dry weights under salinity relative to control. A highly significant negative correlation (r² = –0.99) was observed between salt resistance (% shoot dry weight under salinity relative to control) and shoot Na⁺ concentration of the wheat genotypes studied. However, the salt‐resistant and salt‐sensitive genotypes showed a similar biochemical reaction at the level of proteins after 10 d exposure to 125 mM NaCl. In both genotypes, the expression of more than 50% proteins was changed, but the difference between the genotypes in various categories of protein change (up‐regulated, down‐regulated, disappeared, and new‐appeared) was only 1%–8%. It is concluded that the initial biochemical reaction to salinity at protein level in wheat is an unspecific response and not a specific adaptation to salinity.     

Responses of Batis maritima plants challenged with up to two‐fold seawater NaCl salinity

Batis maritima is a promising halophyte for sand‐dune stabilization and saline‐soil reclamation. This species has also applications in herbal medicine and as an oilseed crop. Here, we address the plant response to salinity reaching up to two‐fold seawater concentration (0–1000 mM NaCl), with a particular emphasis on growth, water status, mineral nutrition, proline content, and photosystem II integrity. Plant biomass production was maximal at 200 mM NaCl, and the plants survived even when challenged with 1000 mM NaCl. Plant water status was not impaired by the high accumulation of sodium in shoots, suggesting that Na⁺ compartmentalization efficiently took place in vacuoles. Concentrations of Mg²⁺ and K⁺ in shoots were markedly lower in salt‐treated plants, while that of Ca²⁺ was less affected. Soluble‐sugar and chlorophyll concentrations were hardly affected by salinity, whereas proline concentration increased significantly in shoots of salt‐treated plants. Maximum quantum efficiency (F_v/F_m), quantum yield of PSII (Φ_PSII), and electron‐transport rate (ETR) were maximal at 200–300 mM NaCl. Both nonphotochemical quenching (NPQ) and photochemical quenching (qP) were salt‐independent. Interestingly, transferring the plants previously challenged with supraoptimal salinities (400–1000 mM NaCl) to the optimal salinity (200 mM NaCl) substantially restored their growth activity. Altogether, our results indicate that B. maritima is an obligate halophyte, requiring high salt concentrations for optimal growth, and surviving long‐term extreme salinity. Such a performance could be ascribed to the plant capability to use sodium for osmotic adjustment, selective absorption of K⁺ over Na⁺ in concomitance with the stability of PSII functioning, and the absence of photosynthetic pigment degradation.     

Isolation and Characterization of Water‐Extractable Arabinoxylan from Hull‐less Barley Flours

A new procedure was developed for the isolation of highly purified water‐extractable arabinoxylan (WE‐AX) from hull‐less barley flour. It included inactivation of endogenous enzymes, removal of proteins with silica gel, and removing β‐glucans, arabinogalactan‐peptides, and starch fragments by enzyme or solvent precipitation steps. WE‐AX recovered by this isolation procedure represented, on average, 47% of all WE‐AX present in hull‐less barley flour. Purified WE‐AX from flour of different hull‐less European barley cultivars contained 84.9–91.8% AX and showed small structural differences. The apparent peak molecular weight of the purified WE‐AX was 730,000–250,000, and the arabinose‐to‐xylose ratio was 0.55–0.63. Proton nuclear magnetic resonance spectroscopy showed that the levels of un‐, O‐2 mono‐, O‐3 mono‐, and O‐2,O‐3 disubstituted xylose residues were 59.1–64.7%, 8.2–10.0%, 5.7–10.6%, and 17.6– 23.1%, respectively, and the ratio of di‐ to monosubstituted xylose was 0.90–1.54. Both O‐3 mono‐ and disubstituted xylose residues occurred isolated or next to disubstituted xylose residues in the WE‐AX chain.     

Plant‐growth‐promoting rhizobacteria isolated from a Calcisol in a semi‐arid region of Uzbekistan: biochemical characterization and effectiveness

Bacteria were isolated from the rhizosphere of cotton, wheat, alfalfa, and tomato grown in field locations within a semi‐arid region of Uzbekistan. Strains were identified as Pseudomonas denitrificans, P. rathonis, Bacillus laevolacticus, Bacillus amyloliquefaciens, and Arthrobacter simplex. The isolated strains produced different enzymes, phytohormone auxin and were antagonists against specific plant‐pathogenic fungi. Most of the strains are tolerant with respect to salt and temperature. All of the bacterial strains isolated in this study have been found to increase plant growth of wheat and maize in pot experiments.     

Changes in soil organic compound composition associated with heat‐induced increases in soil water repellency

Soil heating, as for example experienced during vegetation fires, often increases soil water repellency; however, no detailed analysis of the soil chemical changes associated with this increase has been conducted to date. Here we characterize the changes in organic compound composition associated with heat‐induced increases in water repellency for three Australian eucalypt‐forest soils (one sandy loam, two sands). Laboratory heating (300°C) strongly increased water drop penetration times (WDPTs) in all soils. Soils were extracted by accelerated solvent extraction (ASE) with an iso‐propanol/ammonia mixture (IPA/NH₃ 95:5) and pure iso‐propanol (IPA). Extracts were fractionated into less and more polar fractions and analysed by GC‐MS. Water repellency was eliminated in unheated and heated soils by IPA/NH₃, but not by pure IPA. Before heating, total solvent extracts were dominated by n‐alkanols, terpenoids, C₁₆ acid, C₂₉ alkane, β‐sitosterol and polar compounds. After heating, dominant compounds were aromatic acids, aldehydes, levoglucosan, simple sugars and glycosides. Heating resulted in a sharp absolute decrease of homologous aliphatic series of alkanols and alkanes, a shift of fatty acid signature to members <C₂₀ and an increase in total content of aromatic compounds. Heating also caused the formation of complex high‐molecular‐weight compounds detected in the more polar fractionated extracts and low‐molecular‐weight oxo‐ and hydroxyacids and aromatics in the IPA/NH₃ solvent. We speculate that these compounds in conjunction with fatty acids of <C₁₂ interact with organic and mineral soil surfaces and cause the observed strong increases in soil water repellency following heating.     

Identification and performance of stress‐tolerant phosphate‐solubilizing bacterial isolates on Tagetes minuta grown in sodic soil

Tagetes minuta is moderately adapted to a wide range of climate and due to its tolerance to larger salt, pH and exchangeable sodium percentage (ESP) in soil it is considered to be a potential crop for salt‐affected soil. Its tolerance to adverse condition and association with halophilic microbes can combine to play a greater role in crop production and improvement in soil health. After screening, the potential phosphate‐solubilizing bacteria (PSB) RS‐1, RS‐2 and RS‐3 were isolated from sodic soils and tested in pot experiment using a naturally occurring sodic soil of pH 9.3 and an ESP of about 45. Under optimum conditions in the laboratory, these bacteria showed phosphorus solubilization potential in liquid medium containing tricalcium phosphate (TCP). Inoculation of PSB significantly increased plant growth in terms of height, number of branches, dry matter accumulation and nutrient uptake. Significant changes were also found in content and quality of essential oil. It was observed that PSB also improved the physical, chemical and biological properties of soil. The bacterial strains tested in this study have the potential for use as a biofertilizer in sustaining the growth of Tagetes minuta in salt stress soil and mitigating soil stress problems.     

Potassium–sodium interactions in soil and plant under saline‐sodic conditions

About 7% of the total land around the globe is salt‐affected causing a great loss to agriculture. Salt stress refers to the excessive amount of soluble salts in the root zone which induce osmotic stress and ion toxicity in the growing plant. Among toxic ions, sodium (Na⁺) has the most adverse effects on plant growth by its detrimental influence on plant metabolism in inhibiting enzyme activities. An optimal potassium (K⁺) : Na⁺ ratio is vital to activate enzymatic reactions in the cytoplasm necessary for maintenance of plant growth and yield development. Although most soils have adequate amounts of K⁺, in many soils available K⁺ has become insufficient because of large amounts of K⁺ removal by high‐yielding crops. This problem is exacerbated under sodic or saline‐sodic soil conditions as a consequence of K⁺‐Na⁺ antagonism. Here K⁺ uptake by plants is severely affected by the presence of Na⁺ in the nutrient medium. Due to its similar physicochemical properties, Na⁺ competes with K⁺ in plant uptake specifically through high‐affinity potassium transporters (HKTs) and nonselective cation channels (NSCCs). Membrane depolarization caused by Na⁺ makes it difficult for K⁺ to be taken up by K⁺ inward‐rectifying channels (KIRs) and increases K⁺ leakage from the cell by activating potassium outward‐rectifying channels (KORs). Minimizing Na⁺ uptake and preventing K⁺ losses from the cell may help to maintain a K⁺ : Na⁺ ratio optimum for plant metabolism in the cytoplasm under salt‐stress conditions. It would seem a reasonable assumption therefore that an increase in the concentration of K⁺ in salt‐affected soils may support enhanced K⁺ uptake and reduce Na⁺ influx via HKTs and NCCSs. Although very useful information is available regarding K⁺‐Na⁺ homeostasis indicating their antagonistic effect in plants, current knowledge in applied research is still inadequate to recommend application of potassium fertilizers to alleviate Na⁺ stress in plants under sodic and saline‐sodic conditions. Nevertheless some encouraging results regarding alleviation of Na⁺ stress by potassium fertilization provide the motivation for conducting further studies to improve our understanding and perspectives for potassium fertilization in sodic and saline‐sodic environments.     

Decline in leaf growth under salt stress is due to an inhibition of H+‐pumping activity and increase in apoplastic pH of maize leaves

In this study, salt‐induced changes in the growth rate of maize (Zea mays L.) were investigated during the first phase of salt stress. Leaf growth was reduced in the presence of 100 mM NaCl, and effects were more pronounced for the salt‐sensitive cv. Pioneer 3906 in comparison to the hybrid SR03. While hydrolytic activity of plasma membrane remained unaffected, H⁺‐pumping activity was reduced by 47% in Pioneer 3906, but was unchanged in SR03. Changes in apoplastic pH were detected by ratiometric fluorescence microscopy using the fluorescent dye fluorescein isothiocyanate‐dextran (50 mM). Pioneer 3906 responded with an increase of 0.2 pH units in contrast to SR03 for which no apoplastic alkalization was found. With respect to the hypothesis that the apoplastic pH is influenced by salinity, it is suggested that salt resistance is partly achieved due to efficient H⁺‐ATPase proton pumping, which results in cell‐wall acidification and loosening.     

Soil structure and microbial activity dynamics in 20‐month field‐incubated organic‐amended soils

Soil structure formation is essential to all soil ecosystem functions and services. This study aims to quantify changes in soil structure and microbial activity during and after field incubation and examine the effect of carbon, organic amendment and clay on aggregate characteristics. Five soils dominated by illites, one kaolinitic soil and one smectitic soil were sieved to 2 mm, and each soil was divided into two parts and one part amended with ground rape shoots (7.5 t ha^?1) as an organic amendment. Samples were incubated in the field for 20 months with periodic sampling to measure water‐dispersible clay (WDC) and fluorescein diacetate activity (FDA). After incubation, WDC and FDA were measured on air‐dried 1–2‐mm aggregates. Tensile strength was measured on four aggregate classes (1–2, 1–4, 4–8 and 8–16 mm) and results used to assess soil friability and workability. Intact cores were also sampled to determine compressive strength. During incubation, the amount of WDC depended on soil carbon content while the trends correlated with moisture content. Organic amendment only yielded modest decreases (mean of 14% across all sampling times and soils) in WDC, but it was sufficient to stimulate the microbial community (65–100% increase in FDA). Incubation led to significant macroaggregate formation (>2 mm) for all soils. Friability and strength of newly‐formed aggregates were negatively correlated with clay content and carbon content, respectively. Soil workability was best for the kaolinite‐rich soil and poorest for the smectite‐rich soil; for illitic soils, workability increased with increasing organic carbon content. Organic amendment decreased the compression susceptibility of intact, incubated samples at smaller stress values (<200 kPa).