The influence of soil organic matter fractions on aggregates stabilization in agricultural and forest soils of selected Slovak and Czech hilly lands

Purpose

Because the stability of soil aggregates is affected by many factors, we studied aggregates formed in forest and agricultural soils in different soil types (Cambisols, Luvisols, Chernozems). We evaluated: (1) the differences in water-stable aggregates (WSA) as related to soil type and land management and (2) the relationships between quantitative and qualitative parameters of soil organic matter (SOM), particle-size distribution and individual size classes of WSA.

Materials and methods

Soil samples were taken from three localities (Sobě?ice, Báb, Vieska nad ?itavou). Each study locality included both a forest and an agricultural soil-sampling area.

Results and discussion

We found that in forest soils, the proportion of water-stable macroaggregates (WSA_ma) relative to water-stable microaggregates (WSA_mi) was greater than in agricultural soils. When all soils were assessed together, positive statistically significant correlations were observed between the size classes WSA_ma > 1 mm and organic carbon (C_org) content; however, the WSA_mi content was negatively correlated with C_org content. Favorable humus quality positively influenced the stabilization of WSA_ma > 5 mm; however, we found it had a negative statistically significant effect on stabilization of WSA_ma 1–0.25 mm. In agricultural soils, the stabilization of WSA_ma was associated with humified, i.e., stable SOM. The WSA_ma content was highly positively influenced mainly by fulvic acids bound with clay and sesquioxides; therefore, we consider this humus fraction to be a key to macroaggregate stability in the studied agricultural soils. On the other side, all fractions of humic and fulvic acids participated on the formation of WSA_ma in forest soil, which is a major difference in organic stabilization agents of macroaggregates between studied forest and agricultural soils. Another considerable difference is that WSA_mi in agricultural soils were stabilized primarily with humic acids and in forest soils by fulvic acids. Moreover, in forest soils, a higher content of labile carbon in WSA had a positive effect on formation of WSA_mi.

Conclusions

The observed changes in individual size classes of WSA and interactions between SOM, particle-size distribution, and WSA have a negative impact on soil fertility and thereby endanger agricultural sustainability.

     

Four Swedish long-term field experiments with sewage sludge reveal a limited effect on soil microbes and on metal uptake by crops

Purpose

This study aims to study the effect of sewage sludge amendment on crop yield and on microbial biomass and community structure in Swedish agricultural soils.

Materials and methods

Topsoil samples (0–0.20 m depth) from four sites where sewage sludge had been repeatedly applied during 14–53 years were analysed for total C, total N, pH and phospholipid fatty acids (PLFAs). Heavy metals were analysed in both soil and plant samples, and crop yields were recorded.

Results and discussion

At all four sites, sewage sludge application increased crop yield and soil organic carbon. Sludge addition also resulted in elevated concentrations of some heavy metals (mainly Cu and Zn) in soils, but high concentrations of metals (Ni and Zn) in plant materials were almost exclusively found in the oldest experiment, started in 1956. PLFA analysis showed that the microbial community structure was strongly affected by changes in soil pH. At those sites where sewage sludge had caused low pH, Gram-positive bacteria were more abundant. However, differences in community structure were larger between sites than between the treatments.

Conclusions

At all four sites, long-term sewage sludge application increased the soil organic carbon and nitrogen content, microbial biomass and crop yield. Long-term sewage sludge application led to a decrease in soil pH. Concentrations of some metals had increased significantly with sewage sludge application at all sites, but the amounts of metals added to soil with sewage sludge were found not to be toxic for microbes at any site.     

A comparative analysis of microbiomes in natural and anthropogenically disturbed soils of northwestern Kazakhstan

The goal of this study was to determine the relationships between the structure of the soil microbiome and the agroecological state of soils by the example of natural undisturbed (steppe areas) and anthropogenically disturbed (pastures, croplands, fallows) areas in the territory of northwestern Kazakhstan. The highest abundance of proteobacteria was found in the anthropogenically disturbed of fallows and in undisturbed soils; in other cases, actinobacteria and representatives of the Firmicutes phylum predominated. Different kinds of anthropogenic impacts resulted in the decrease in the portions of bacteria from the Acidobacteria, Gemmatimonadetes, and Firmicutes phyla. In the disturbed soils, the portions of bacteria from the Erysipelothrix, Mycobacterium, Methylibium, Skermanella, Ralstonia, Lactococcus, Bdellovibrio, Candidatus nitrososphaera, Catellatospora, Cellulomonas, Stenotrophomonas, and Steroidobacter genera increased. Bacteria of the Erysipelothrix and Methylibium genera occurred only in the undisturbed soils. The anthropogenically disturbed and undisturbed soils differed significantly in the taxonomic structure of their microbiomes forming two separate clusters, which confirms the efficiency of using the data on the structure of soil microbiomes when assessing the agroecological status of soils.     

Environmental behaviors of phenolic acids dominated their rhizodeposition in boreal poplar plantation forest soils

Purpose

The deposition of phenolic acids in soils is of ecological and environmental importance for growth of trees and nutrient cycling of soil. The objective of this study was to investigate the relationship between environmental behaviors of phenolic acids and their rhizodeposition in forest soils. The results could provide more information regarding the ecological process of root exudates at the plant-soil interface.

Materials and methods

The amounts of four types of phenolic acids (i.e., p-hydroxybenzoic acid, benzoic acid, cinnamic acid, and vanillin acid) in the rhizosphere and bulk soils of two plantation forests were measured and compared using HPLC (Thermo Electron Corp., USA). The root exudates of poplar saplings under three nutrient conditions (normal (CK), nitrogen stress (low-N), and phosphorus stress (low-P)) were collected via adsorption resins (Amberlite XAD-16, USA). The phenolic acids in root exudates were then quantified by external standards. The adsorption and degradation dynamics of the phenolic acids in soils were monitored by exogenous application in the lab. Several models were employed to reveal the environmental behavior properties of phenolic acids after they entered into soils. Meanwhile, the enumeration of the culturable bacteria and fungi was conducted using soil dilution plate method to measure the abundance variation of the microbial community along with the degradation of the phenolic acids.

Results and discussion

More phenolic acids deposited in the rhizosphere soils than in the bulk soils of the poplar plantations. The difference was significant (p?<?0.05). Under normal nutrient conditions, poplar roots could secrete phenolic acids. However, in low-N and low-P conditions, poplar roots would significantly increase the secretion (p?<?0.05). Phenolic acids were quickly adsorbed by the soil within 24 h. These four phenolic acids showed varied adsorption capacities by soil, but they are generally more than 1500 μg g soil^?1. Phenolic acids were degraded over time with half-lives around 1.29–4.24 days. Among them, p-hydroxybenzoic acid showed the highest secretion capability and the longest persistence, indicating that p-hydroxybenzoic acid had higher deposition potential in soils. Environmental behaviors should be responsible for the rhizodepostion of phenolic acids in poplar plantations.

Conclusions

Roots could release a certain amount of phenolic acids into the rhizosphere soil, especially under nutrient stress. Phenolic acids could be easily adsorbed onto soil colloids. However, the degradation amount of phenolic acids was positively related with the abundance of the fungi community. Thus, the rhizodeposited phenolic acids were the trade-off between those produced by root exudation and those consumed by microbial degradation.

     

Rainfall/runoff/erosion relationships and soil properties survey in abandoned shallow soils of NE Spain

Purpose

Shallow soils previously cultivated under terraced systems may change their properties after agricultural release and spontaneous plant colonization. Investigations were conducted in terraced fields (NE Spain) to prove that vegetation installed after the abandonment may generally improve soil properties by the formation of stable organic horizons. However, restriction in plant species along the natural vegetation succession and intensification of erosion processes may occur after abandonment depending on fire frequency and soil use history.

Materials and methods

Ten environments with different plant covers under a Lithic Xerorthent were selected and erosion plots (Gerlach type) installed providing their best adaptability at the terrace scale. Selected soil environments represented the sequence of abandonment: from current poorly cultivated soils, soils under pasture, soils under shrubs, and soils under stands of pine and cork trees. Relevant rainfall events producing runoff and erosion were recorded from November 2011 to May 2012. Erosion rates and erosion components were analysed in sediments and water in order to monitor carbon, nitrogen and other nutrient removal by overland flow. Similarly, the physical and chemical properties of the soil environments under study were determined at the same time interval of runoff erosion.

Results and discussion

Soils under pasture, vines and recently burnt pine forest produced the highest runoff followed by soils under shrubs and forest. However, eroded soil yields and nutrient removal were much higher in cultivated soils and soils in recently burnt sites, which had shown poorer soil properties with respect to soils abandoned for longer and preserved by fire. Fire-affected soil environments also showed a thinner organic horizon and reduced water retention. Although erosion rates and nutrient depletion were low in all environments with respect to other areas of Spain, higher splash than water erosion was an early warning indicator of the high susceptibility to degradation of these shallow soils.

Conclusions

Results outlined that the renaturalization dynamics after agricultural abandonment are complex biophysical processes involving the parent material, depth to bedrock and other soil properties as well as the succession of vegetative cover and plant associations responsible for building a new soil mantle contrasting with erosion processes. Planning for management of land abandonment is strongly recommended.

     

Changes in soil microbial community structure following the abandonment of agricultural terraces in mountainous areas of Eastern Spain

In Eastern Spain, almond trees have been cultivated in terraced orchards for centuries, forming an integral part of the Mediterranean forest scene. In the last decades, orchards have been abandoned due to changes in society. This study investigates effects of changes in land use from forest to agricultural land and the posterior land abandonment on soil microbial community, and the influence of soil physico-chemical properties on the microbial community composition (assessed as abundances of phospholipids fatty acids, PLFA). For this purpose, three land uses (forest, agricultural and abandoned agricultural) at four locations in SE Spain were selected. Multivariate analysis showed a substantial level of differentiation in microbial community structure according to land use. The microbial communities of forest soils were highly associated with soil organic matter content. However, we have not found any physical or chemical soil property capable of explaining the differences between agricultural and abandoned agricultural soils. Thus, it was suggested that the cessation of the perturbation caused by agriculture and shifts in vegetation may have led to changes in the microbial community structure. PLFAs indicative of fungi and ratio of fungal to bacterial PLFAs were higher in abandoned agricultural soils, whereas the relative abundance of bacteria was higher in agricultural soils. Actinomycetes were generally lower in abandoned agricultural soils, while the proportions of vesicular–arbuscular mycorrhyzal fungi were, as a general trend, higher in agricultural and abandoned agricultural soils than in forests. Total microbial biomass and richness increased as agricultural < abandoned agricultural < forest soils.     

Pedotransfer Functions for the Estimation of Saturated Hydraulic Conductivity for Some Indian Sandy Soils

Determination of the saturated hydraulic conductivity (k_s) is needed in many studies and applications related to irrigation, drainage, water movement and solute transport in the soil. Although many advances are made for direct measurements of k_s, they are usually time consuming and costly. Some attempts have been made to indirectly predict the saturated hydraulic conductivity from the more easily or readily available basic soil properties. The objective of this study was to develop and validate Pedotransfer Functions (PTFs) for estimation of saturated hydraulic conductivity using multiple non-linear regression technique. One hundred and one soil samples were collected from agricultural and forest soils at different depths, at different locations in the Pavanje River basin that lies in the southern coastal region of Karnataka, India. Saturated hydraulic conductivity was measured, by variable falling head method through Permeameter in the laboratory. Prediction accuracies were evaluated using coefficient of determination, root mean square error, mean error, geometric mean error ratio and geometric standard deviation of the error ratio between measured and predicted values. The results show that, the PTFs for the estimation of saturated hydraulic conductivity could be used appropriately for the soils with loamy sand and sandy loam textures falling in this area of the coastal region of southern India.     

The use of phospholipid fatty acid analysis to estimate bacterial and fungal biomass in soil

The cell content of 12 bacterial phospholipid fatty acids (PLFA) was determined in bacteria extracted from soil by homogenization/centrifugation. The bacteria were enumerated using acridine orange direct counts. An average of 1.40×10^-17 mol bacterial PLFA cell^-1 was found in bacteria extracted from 15 soils covering a wide range of pH and organic matter contents. With this factor, the bacterial biomass based on PLFA analyses of whole soil samples was calculated as 1.0–4.8 mg bacterial C g^-1 soil C. The corresponding range based on microscopical counts was 0.3–3.0 mg bacterial C g^-1 soil C. The recovery of bacteria from the soils using homogenization/centrifugation was 2.6–16% (mean 8.7%) measured by PLFA analysis, and 12–61% (mean 26%) measured as microscopical counts. The soil content of the PLFA 18:26 was correlated with the ergosterol content (r=0.92), which supports the use of this PLFA as an indicator of fungal biomass. The ratio 18:26 to bacterial PLFA is therefore suggested as an index of the fungal:bacterial biomass ratio in soil. An advantage with the method based on PLFA analyses is that the same technique and even the same sample is used to determine both fungi and bacteria. The fungal:bacterial biomass ratio calculated in this way was positively correlated with the organic matter content of the soils (r=0.94).     

Differences in the composition and diversity of bacterial communities from agricultural and forest soils

Differences in the bacterial communities of soils caused by disturbances and land management were identified in rRNA gene libraries prepared from conventional tilled (CT) and no tilled (NT) cropland, a successional forest after 30 y of regrowth (NF) and an old forest of >65 y (OF) at Horseshoe Bend, in the southern Piedmont of Georgia (USA). Libraries were also prepared from forests after 80 y of regrowth at the Coweeta Long Term Ecological Research site (CWT) in the Southern Appalachians of western North Carolina (USA). The composition of the bacterial communities in cropland soils differed from those of the Horseshoe Bend OF and CWT forest soils, and many of the most abundant OTUs were different. Likewise, the diversity of bacterial communities from forest was less than that from cropland. The lower diversity in forest soils was attributed to the presence of a few, very abundant taxa in forest soils that were of reduced abundance or absent in cropland soils. After 30 y of regrowth, the composition of the bacterial soil community of the NF was similar to that of the OF, but the diversity was greater. These results suggested that the bacterial community of soil changes slowly within the time scale of these studies. In contrast, the composition and diversity of the bacterial communities in the Horseshoe Bend OF and Coweeta soils were very similar. Thus, this forest soil bacterial community was widely distributed in spite of the differences in soil properties, vegetation, and climate as well as resilient to disturbances of the above ground vegetation.     

The informativeness of coefficients <Emphasis Type="Italic">a</Emphasis> and <Emphasis Type="Italic">b</Emphasis> of the soil line for the analysis of remote sensing materials

The coefficients of the soil line are often taken into account in calculations of vegetation indices. These coefficients are usually calculated for the entire satellite image, or are taken as constants without any calculations. In both cases, the informativeness of these coefficients is low and insufficient for the needs of soil mapping. In our study, we calculated soil line coefficients at 8000 lattice points for the territory of Plavsk, Arsen’evsk, and Chern districts of Tula oblast on the basis of 34 Landsat 5, 7, and 8 images obtained in 1985–2014. In order to distinguish between the soil line calculated for a given image and the soil line calculated for lattice points on the basis of dozens of multitemporal images, we suggest that the latter can be referred to as the temporal soil line. The temporal soil line is described by a classical equation: NIR = RED a + b, where a is its slope relative to the horizontal axis (RED), and b is the Y-axis (NIR) intercept. Both coefficients were used to create soil maps. The verification of the maps was performed with the use of data on 1985 soil pits. The informativeness of these coefficients appeared to be sufficient for delineation of eight groups of soils of different taxonomic levels: soddy moderately podzolic soils, soddy slightly podzolic soils, soddy-podzolic soils, light gray forest soils, gray forest soils, dark gray forest soils, podzolized chernozems, and leached chernozems. The b coefficient proved to be more informative, as it allowed us to create the soil map precisely on its basis. In order to create the soil map on the basis of the a coefficient, we had to apply some threshold values of the b coefficient. The bare soil on each of Landsat scenes was separated with the help of the mask of agricultural fields and the notion of the spectral neighborhood of soil line (SNSL).     

Long-term agronomic practices alter the composition of asymbiotic diazotrophic bacterial community and their nitrogen fixation genes in an acidic red soil

The asymbiotic diazotrophic bacteria are important for nitrogen (N) input to soil. Here, we investigated asymbiotic diazotrophic bacteria in an acidic red soil from functional, phylogenetic, and ecological perspectives. We firstly confirmed that phosphorus (P) availability determines the overall asymbiotic N fixation potential in the red soil. Then, we analyzed the soil bacterial community and N fixing (nifH) gene composition. Long-term different fertilizations significantly affected the composition of soil bacterial community. In addition, long-term organic cultivations increased most of the asymbiotic diazotrophic bacteria and the corresponding nifH gene abundances. Few asymbiotic diazotrophic bacteria, belonging to Chloroflexaceae, Methylocystaceae, Enterobacteriaceae, and Pseudomonadaceae, and their corresponding nifH genes were more abundant in N and P co-limited than in not co-limited soils, suggesting that some bacterial taxa from these families might be activated under nutrient limited conditions. Our findings provided new information for the distribution of asymbiotic diazotrophic bacteria in red soil and gave insights into the ecology of diazotrophic bacteria.     

Changes in the microbial community of an arable soil caused by long-term metal contamination

The effects of past applications of farmyard manure (FYM, applied from 1942 to 1967), metal‐contaminated sewage sludge (applied from 1942 to 1961) and mineral fertilizer (NPK, applied from 1942 until now) on the microbial biomass and community structure in a sandy loam, arable soil from the Woburn Market Garden Experiment, UK, were investigated in 1998. Concentrations of Cu, Ni and Zn in soils which previously received sewage sludge were less than current European Union (EU) limits, but the soil Cd concentration was more than twice the permitted limit. Organic‐C concentration in the FYM‐treated soil and contaminated soils was about twice that of NPK‐treated soil. The initial microbial biomass‐C and estimates of total bacterial numbers by acridine orange direct count were significantly (P < 0.05) greater in the FYM‐treated soil compared with the NPK‐treated and the most contaminated soils. Total phospholipid fatty acid (PLFA) concentration (another measure of biomass) was significantly greater in the FYM‐treated soil compared with either the low or high metal‐contaminated soils, both of which contained similar PLFA concentrations. In the metal‐contaminated soils, in contrast, fluorescent Pseudomonas counts, as a percentage of total plate counts, were at least 1.5 times greater than in the uncontaminated soils. The concentrations of these microbial parameters were significantly (P < 0.05) less in the NPK soil than in all the other treatments. Biomass‐C as a percentage of organic‐C was also significantly (P < 0.05) greater in the uncontaminated soils compared with the metal‐contaminated soils. Biomass specific respiration rates in the metal‐contaminated soils were c. 1.5 times those in the FYM‐treated soil. In the metal‐contaminated soils, the concentration of mono‐unsaturated and hydroxy‐fatty acids (derived from phospholipids), and lipopolysaccharide hydroxy‐fatty acids (all indicative of Gram‐negative bacteria) were significantly (P < 0.05) greater than branched fatty acids (indicative of Gram‐positive bacteria). Furthermore, Gram‐negative counts were 62–68% greater than Gram‐positive counts in the metal‐contaminated soils. Branched fatty acid concentration was significantly (P < 0.05) greater in the FYM‐treated soil than in the metal‐contaminated soils. Gram‐positive counts were also 63% greater than Gram‐negative counts in the FYM‐treated soil. We found that effects of the relatively small heavy metal concentration caused measurable decreases in soil microbial biomass‐C concentrations, acridine orange direct counts and Gram‐positive counts. There were also increases in biomass specific respiration rates, and the microbial community had changed substantially, nearly 40 years after the metal inputs ceased. We conclude that, at the very least, the current EU permitted limits for heavy metals in agricultural soils should not be relaxed.     

Microbial activity and community structure in degraded soils on the Loess Plateau of China

Soil erosion is the main process leading to soil degradation on the Loess Plateau of China. The effects of soil‐erosion intensity (sheet, rill, and gully erosion) and different land use (140 y–old secondary forest site, 16 y–old bare site, 6 y–old succession site, and 43 y–old arable site) on gross and net N mineralization, soil organic‐carbon (SOC) turnover, the size and structure of the soil microbial community (phospholipid fatty acid analysis) were assessed. Erosion intensity in the bare plot increased from top slope (sheet erosion) to down slope (gully erosion). The more severe the soil erosion the stronger was the decline of SOC, total N, and microbial biomass (MB). The MBC/SOC ratio decreased whereas the metabolic quotient (qCO₂) increased. Differences in nutrient turnover in the different erosion zones of the bare plot were not significant. The microbial community changed towards less Gram negative bacteria and relative more fungi in the gully‐erosion zone. In forest soils, qCO₂ and the MBC/SOC ratio demonstrate a higher substrate‐use efficiency of the microbial biomass than in bare soils. Gross N mineralization and gross NH consumption clearly indicated a higher microbial activity in forest than in bare soils. Arable land use shifted the soil microbial community towards a higher relative abundance of fungi and a lower one of actinomycetes. During 6 y of natural succession on former bare plots, soil nutrient content and turnover as well as microbial biomass and structure developed towards forest conditions.     

The impacts of individual plant species on rhizosphere microbial communities in soils of different fertility

To investigate the effects of individual plant species on microbial community properties in soils of differing fertility, a microcosm experiment was carried out using plant species representative of the dominant flora in semi-fertile temperate grasslands of northern England. Soil microbial biomass and activity were found to be significantly greater in the more fertile, agriculturally improved soil than in the less productive unimproved meadow soil. Differences in microbial community structure were also evident between the two soils, with fungal abundance being greater in the unimproved soil type. Individual plant species effects significantly differed between the two soils. Holcus lanatus and Anthoxanthum odoratum stimulated microbial biomass in the improved soil type, but negatively affected this measure in the unimproved soil. In both soil types, herb species generally had negative effects on microbial biomass. Patterns for microbial activity were less consistent, but as with microbial biomass, A. odoratum and H. lanatus promoted respiration, whereas the herbs negatively affected this measure. All plant species grown in the improved soil increased the abundance of fatty acids synthesised by bacteria (bacterial phospholipid fatty acid analysis) relative to bare soil, but they negatively impacted on this group of fatty acids in unimproved soil. Similarly, the abundance of the fungal fatty acid 18:26 was increased by all plants in the more fertile improved soil only, albeit non-significantly. Our data indicate that effects of plant species on microbial properties differ markedly in soils of differing fertility, making general predictions about how individual plants impact on soil properties difficult to make.     

Characterization of Cu-resistant bacterial communities in Cu-contaminated soils

Bacterial communities in a spoil heap in a copper mine, a forest soil with high Cu contamination, and an agricultural soil with low Cu contamination were characterized in terms of Gram-staining, plasmid frequency, pigmentation, Cu-resistance system, and predominant Cu-resistant bacterial species. Similarity existed in that the ratio of green colonies for sorbing Cu and Gram-negative bacteria increased with the increase of the Cu content of the medium regardless of the characteristics of the bacterial communities. It was found that the plasmid was not present in most of the Cu-resistant bacteria of the soils. Curesistant genera including Burkholderia, Alcaligenes, and Methylobacterium species were isolated from the Cu contaminated soils using YG agar plates treated with 2 mM Cu. Furthermore, the bacterium with the highest Cu resistance (MIC = 5.5 mm Cu) was identified as a Gram-positive bacterium Bacillus sp., though most of the Cu-resistant bacteria were Gram-negative.     

Effects of straw amendment and moisture on microbial communities in Chinese fluvo-aquic soil

Purpose

Returning crop straw into fields is a typical agricultural practice to resolve an oversupply of straw and improve soil fertility. Soil microorganisms, especially eukaryotic microorganisms, play a critical role in straw decomposition. To date, microbial communities in response to straw amendment at different moisture levels in Chinese fluvo-aquic soil are poorly understood. The aim of this study was to explore the effects of straw amendment and moisture on microbial communities in Chinese fluvo-aquic soil.

Materials and methods

Two soils (one was applied with organic manure, and the other was not applied with any fertilizer) from a long-term field experiment in the North China Plain were collected. Soils with and without straw amendment at 25 and 55 % of the average water-holding capacities of the two soils were incubated at 25 °C for 80 days. All treatments were sampled 20 and 80 days after the start of incubation. Microbial biomass and community structure were analyzed by phospholipid fatty acids (PLFA) assay, and the eukaryotic diversity and community composition were assessed via barcoded pyrosequencing of the 18S ribosomal RNA (rRNA) gene amplicons.

Results and discussion

PLFA analysis showed that straw amendment increased the biomass of Gram-positive bacteria, Gram-negative bacteria, actinobacteria, and fungi and shifted microbial community structure. The varied straw availability resulted in a large variation in microbial community structure. In the presence of straw, actinobacterial and fungal biomass both decreased under high moisture content. 18S rRNA gene pyrosequencing indicated that straw amendment decreased eukaryotic diversity and richness and probably restructured the eukaryotic community. Under identical moisture content, long-term organic manure-fertilized soil had higher eukaryotic diversity and richness than the unfertilized soil. In the amended soils under high moisture content, the relative abundance of dominant fungal taxa (Dikarya subkingdom, Ascomycota phylum, and Pezizomycotina subphylum) decreased.

Conclusions

Straw amendment increases microbial biomass, shifts microbial community structure, and decreases eukaryotic diversity and richness. High moisture content probably has a negative effect on fungal growth in the amended soils. In conclusion, microbial communities in Chinese fluvo-aquic soil are significantly affected by straw amendment at different moisture levels.     

Profile analysis of microbiomes in soils of solonetz complex in the Caspian Lowland

The taxonomic structure of the microbiota in two associated soils—solonetz on a microhigh and meadow-chestnut soil in a microlow—was studied in the semidesert of the Caspian Lowland. A highthroughput sequencing of the 16S rRNA gene was used for the soil samples from genetic horizons. A considerable reduction in the bacterial diversity was found in the lower horizons of the solonetz and compact solonetzic horizon with a high content of exchangeable sodium. In the meadow-chestnut soil, the microbial diversity little decreased with the depth. In both soils, a portion of archaea from the Thaumarchaeota group also decreased in the deeper horizons. In the soil horizons with the lower total bacterial diversity, a share of proteobacteria of the Enterobacteriaceae, Pseudomonadaceae, and Sphingomonadaceae families became higher. The difference between the structure of the microbial population in the solonetz and meadow- chestnut soil can be first explained by the different water regimes and soil consistence.     

Crop rotation and seasonal effects on fatty acid profiles of neutral and phospholipids extracted from no‐till agricultural soils

Analysis of phospholipids (PLFA) and neutral lipids fatty acids (NLFA) was used to characterize no‐till productive agricultural soils associated with different crop rotation levels, replicated across a 400 km transect in the Argentinean pampas, during two sampling seasons, summer and winter. High rotation (HR) management consisted in maize–wheat–soybean intense rotation including cover crops. Low rotation (LR) management trend to soybean monocultures. Soils from nearby natural environments (NEs) were used as references. Fatty acids concentration in soils (nmol/g) decreased c.a. 50% from summer to winter differentially according to soil treatment being the smallest decrease in HR management 35%. Both PLFA and NLFA profiles showed strong potential to discriminate between different land uses. In winter samples, some rare or unknown fatty acids were relevant for the discrimination of agricultural practices while NLFA 20:0 appears to be a good marker of HR soils despite season or location. The PLFA‐based taxonomic biomarkers for total bacteria, Gram‐negative bacteria and arbuscular mycorrhiza showed a significant trend NE>HR>LR in the winter sampling. HR management was also characterized by high levels of NLFA in winter samples as if high crop rotation improves lipids reserves in soil during winter more than in monocropping soil management. In conclusion, PLFA and particularly NLFA profiles appear to provide useful and complementary information to obtain a footprint of different soil use and managements, improving soil biochemistry characterization tools.     

The influence of super-high-frequency radiation on the enzyme activity and number of microorganisms in soils of southern Russia

The effects of super-high-frequency radiation (SHF radiation) on the microflora and enzymatic activity of an ordinary chernozem, a chestnut soil, a brown forest soil, and gray sands were studied. The exposure time of the 800-W SHF radiation was 30 s, 1, 10, and 60 min. The activity of the soil enzymes (catalase and invertase) was found to be more resistant to the action of SHF radiation than the number of microorganisms (ammonifying bacteria (including sporogenous ones), bacteria of the genus Azotobacter, and micromycetes). According to the resistance of the enzymes, the soils studied form the following sequence: gray sands > ordinary chernozem ≥ chestnut soil > brown forest soil. Under the action of the SHF radiation, the number of microorganisms in the ordinary chernozem decreased to a lesser extent.     

Application of compost and clay under water-stressed conditions influences functional diversity of rhizosphere bacteria

Applications of compost and clay to ameliorate soil constraints such as water stress are potential management strategies for sandy agricultural soils. Water repellent sandy soils in rain-fed agricultural systems limit production and have negative environmental effects associated with leaching and soil erosion. The aim was to determine whether compost and clay amendments in a sandy agricultural soil influenced the rhizosphere microbiome of Trifolium subterraneum under differing water regimes. Soil was amended with compost (2% w/w), clay (5% w/w) and a combination of both, in a glasshouse experiment with well-watered and water-stressed (70 and 35% field capacity) treatments. Ion Torrent 16S rRNA sequencing and Phylogenetic Investigation of Communities by Reconstruction of Unobserved States (PICRUSt) analysis of functional gene prediction were used to characterise the rhizosphere bacterial community and its functional component involved in nitrogen (N) cycling and soil carbon (C) degradation. Compost soil treatments increased the relative abundance of copiotrophic bacteria, decreased labile C and increased the abundance of recalcitrant C degrading genes. Predicted N cycling genes increased with the addition of clay (N₂ fixation, nitrification, denitrification) and compost + clay (N₂ fixation, denitrification) and decreased with compost (for denitrification) amendment. Water stress did not alter the relative abundance of phylum level taxa in the presence of compost, although copiotrophic Actinobacteria increased in relative abundance with addition of clay and with compost + clay. A significant role of compost and clay under water stress in influencing the composition of rhizosphere bacteria and their implications for N cycling and C degradation was demonstrated.