Alternative error distribution models for standardization of catch rates of non-target species from a pelagic longline fishery: billfish species in the Venezuelan tuna longline fishery

Alternative error distributions were evaluated for calculating indices of relative abundance for non-target species using catch and effort data from commercial fisheries. A general procedure is presented for testing the underlying assumptions of different error distributions. Catch rates, from an observer program, of billfish caught mainly as bycatch in a pelagic tuna longline fishery in the Western Central Atlantic were standardized. Although catches of billfishes are not common in pelagic tuna longline fisheries, these fisheries are one of the main sources of fishing mortality for these stocks in the central Atlantic due to the magnitude and spatial extent of longline fishing effort. Billfish CPUE data are highly skewed with a large proportion of zero observations. Delta distribution models can accommodate this type of data, and involve modeling the probability of a non-zero observation and the catch rate given that the catch is non-zero separately. Three different Delta models were compared against other error distributions, including the lognormal, log-gamma, and Poisson. Diagnostic checks and deviance table analyses were performed to identify the best error distribution and the set of factors and interactions that most adequately explained the observed variability. The results indicated that the Delta-lognormal model (a binomial error distribution for the probability of a non-zero catch and lognormal error for the positive catch rates) complied best with the underlying characteristics of the data set. Analyses of catch rates for blue marlin, white marlin and sailfish confirmed the spatio-temporal nature of their distribution in the central Atlantic and Caribbean Sea. Also, the analyses indicated that catch rates of billfish differed among fishing vessel types; larger vessels had a higher probability of catching blue marlin, the more oceanic-oriented species, and lower probabilities of catching the more coastal-oriented species white marlin and sailfish. Standardized catch rates indicated in general a lower relative abundance for blue and white marlin in the most recent years, although estimated confidence intervals overlap through the years especially for white marlin.     

Habitat preferences of striped marlin (Kajikia audax) in the eastern Pacific Ocean

Striped marlin (Kajikia audax) is an epipelagic species distributed in tropical and temperate waters of the Pacific Ocean. In the central and eastern Pacific Ocean, it is captured principally in commercial longline fisheries, and in small artisanal fisheries, however, it is also taken throughout its range in this region as an incidental catch of the tuna purse‐seine fishery. Previous studies suggest that overexploitation and climate change may reduce abundance and cause changes in spatial distributions of marine species. The main objective of this study was to describe the habitat preferences of striped marlin and the changes in its distribution in response to environmental factors. Habitat modeling was conducted using a maximum entropy model. Operational level data for 2003–2014, collected by scientific observers aboard large purse seine vessels, were compiled by the Inter‐American Tropical Tuna Commission and were matched with detailed (4 km) oceanographic data from satellites and general circulation models. Results showed that the spatial distribution of habitat was dynamic, with seasonal shifts between coastal (winter) and oceanic (summer) waters. We found that the preferred habitat is mainly in coastal waters with warm sea surface temperatures and a high chlorophyll‐a concentration.     

Habitat utilization and vertical movements of white marlin (Tetrapturus albidus) released from commercial and recreational fishing gears in the western North Atlantic Ocean: inferences from short duration pop-up archival satellite tags

Researchers have applied numerous techniques to improve billfish stock assessments, including habitat‐based models that incorporate behavioral and oceanographic parameters to standardize historical catch‐per‐unit‐effort time‐series data. These methods have allowed researchers to account for significant changes in the depths of pelagic longline (PLL) gear deployments over time. This study presents habitat‐use data recovered from high‐resolution 5‐ and 10‐day pop‐up satellite archival tags (PSATs) attached to 47 surviving white marlin released from commercial and recreational fishing gears offshore of the U.S. East Coast, the northern Caribbean, and Venezuela between 2002 and 2004. Data recovered from transmitting tags indicated that white marlin spent nearly half of their time associated with warm, near‐surface waters (<10 m). All fish displayed frequent short duration (mean: 39.8 min) vertical excursions from surface waters to depths averaging 51 m. Qualitative and multivariate classifications of data from completely transmitted movements of surviving white marlin revealed two major types of descents: one pattern was characterized by deep ‘V’‐shaped excursions of relatively short duration (mean: 23.4 min) while the other featured descents that were more broadly ‘U’‐shaped and confined to a specific depth range for an extended period of time (mean: 75.8 min). Based on the frequency, persistence, and patterns of these vertical movements, white marlin appear to direct a considerable proportion of foraging effort well below surface waters, a behavior that may account for relatively high catch rates of white marlin on some deep‐set PLL deployments.     

Application of a habitat-based model to estimate effective longline fishing effort and relative abundance of Pacific bigeye tuna (Thunnus obesus)

A new habitat‐based model is developed to improve estimates of relative abundance of Pacific bigeye tuna (Thunnus obesus). The model provides estimates of `effective' longline effort and therefore better estimates of catch‐per‐unit‐of‐effort (CPUE) by incorporating information on the variation in longline fishing depth and depth of bigeye tuna preferred habitat. The essential elements in the model are: (1) estimation of the depth distribution of the longline gear, using information on gear configuration and ocean currents; (2) estimation of the depth distribution of bigeye tuna, based on habitat preference and oceanographic data; (3) estimation of effective longline effort, using fine‐scale Japanese longline fishery data; and (4) aggregation of catch and effective effort over appropriate spatial zones to produce revised time series of CPUE. Model results indicate that effective effort has increased in both the western and central Pacific Ocean (WCPO) and eastern Pacific Ocean (EPO). In the WCPO, effective effort increased by 43% from the late 1960s to the late 1980s due primarily to the increased effectiveness of effort (deeper longline sets) rather than to increased nominal effort. Over the same period, effective effort increased 250% in the EPO due primarily to increased nominal effort. Nominal and standardized CPUE indices in the EPO show similar trends – a decline during the 1960s, a period of stability in the 1970s, high values during 1985–1986 and a decline thereafter. In the WCPO, nominal CPUE is stable over the time‐series; however, standardized CPUE has declined by ～50%. If estimates of standardized CPUE accurately reflect relative abundance, then we have documented substantial reductions of bigeye tuna abundance for some regions in the Pacific Ocean. A decline in standardized CPUE in the subtropical gyres concurrent with stability in equatorial areas may represent a contraction in the range of the population resulting from a decline in population abundance. The sensitivity of the results to the habitat (temperature and oxygen) assumptions was tested using Monte Carlo simulations.     

运用数据缺乏方法估算印度洋大青鲨可持续渔获量

运用数据缺乏方法,即基于资源衰减的可持续渔获量估算模型(DCAC),结合Monte Carol模拟,对印度洋大青鲨(Prionace glauca)的可持续渔获量进行估计。结果表明,若大青鲨资源衰减比率(Δ)为正值,当自然死亡系数M增大或最大可持续产量对应的捕捞死亡系数(F_(MSY))与M的比值c增大时,可持续渔获量估算值(Y_(sust))增大;若Δ接近零甚至为负值,当M或c增大时,Y_(sust)呈减小趋势。资源丰度指数的选择对DCAC结果有较大影响,基于日本延绳钓渔业1998—2014年和2001—2014年两个时间序列的丰度指数得到的Y_(sust)结果可靠,且与其他模型估算的MSY值接近。2014年印度洋大青鲨的年渔获量正好处在或略高于最大可持续产量(MSY)水平,但该结果仍具有一定的不确定性。本研究表明运用DCAC方法估算印度洋大青鲨可持续渔获量是可行的,但对其他鲨鱼种类的适用性仍需进一步研究,该结果可为数据缺乏方法在大洋和中国近海渔业中的应用提供参考。     

Evaluation of a spatially sex‐specific assessment method incorporating a habitat preference model for blue marlin (Makaira nigricans) in the Pacific Ocean

Blue marlin, widely distributed throughout the Pacific Ocean, are sexually dimorphic, have certain preferred habitats, and migrate seasonally. These characteristics have been ignored in previous stock assessment models. A population dynamics model that includes spatial structure, and sex and age structure was therefore constructed and fitted to fisheries data for blue marlin, along with information on the relative density of the population over space derived from a habitat preference model that uses the oceanographic and biological variables sea‐surface temperature, mixed layer depth, sea‐surface height anomaly, and chlorophyll‐a concentration. Monte Carlo simulation was then used to examine the estimation performance of the stock assessment method. Estimates of management‐related quantities including current spawning stock biomass are substantially biased when the assessment method ignores seasonal movement and sexual dimorphism. We also found that (i) uncertainty about the relationship between catch rate and abundance influences estimation performance to a larger extent than uncertainty in catches, (ii) the outcomes of the assessment are sensitive to the values assumed for natural mortality and stock‐recruitment steepness, and (iii) the ratio of current spawning stock biomass to that at pre‐exploitation equilibrium appears to be the most robust among the quantities considered. We conclude that assessment methods for blue marlin in the Pacific Ocean need to take account of seasonal migration and sex structure to improve stock assessments.     

Principles and approaches to abate seabird by-catch in longline fisheries

Mortality in longline fisheries is a critical global threat to most albatross and large petrel species. Here we identify key principles and approaches to identify and achieve broad use of effective seabird by‐catch avoidance methods. Despite the availability of highly effective and cost‐saving seabird avoidance methods, few longline fleets employ them. Given the political context and capacity of management authorities of the majority of longline fisheries, it is critical to identify seabird avoidance strategies that are not only highly effective, but are also economically viable and commercially practical. Adoption of an international performance standard for longline baited hook–sink rate, and prescribing minimum gear weighting designs that meet this standard that are achievable by all longline fisheries, would be an important step forward towards resolving low use of seabird avoidance methods by vessels, including those in illegal, unregulated and unreported fisheries. Due to differences between fleets, no single seabird avoidance measure is likely to be effective and practical in all longline fisheries. Therefore, testing of seabird avoidance methods in individual fleets is needed to determine efficacy and economic viability. Longline fishers should directly participate in these trials as they have a large repository of knowledge and skills to effectively develop and improve seabird by‐catch avoidance techniques, and this provides industry with a sense of ownership for uptake of effective by‐catch reduction methods. Establishing protected areas containing seabird colonies and adjacent waters within a nation's EEZ can be an expedient method to address seabird by‐catch. However, establishing high seas marine protected areas to restrict longline fishing in seabird foraging areas, which would require extensive and dynamic boundaries and large buffer zones, may not be a viable short‐term solution because of the extensive time anticipated to resolve legal complications with international treaties, to achieve international consensus and political will, and to acquire requisite extensive resources for surveillance and enforcement. Analysis of results of research on seabird avoidance methods reveals that the most reliable comparisons of the efficacy of alternative strategies are from comparing the effectiveness of methods tested in a single experiment. Benefits from standardizing the reporting of seabird by‐catch rates to account for seabird abundance are described. To provide the most precise inputs for seabird population models, estimates of seabird mortality in longline fisheries should account for seabird falloff from hooks before hauling, delayed mortality of seabirds caught but freed from gear, and mortality caused by hooks discarded in offal.     

Standardized catch and survival rates,and effect of a ban on shark retention,Palau pelagic longline fishery

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Ecological risk assessment of species impacted by fisheries in waters off eastern Taiwan

An ecological risk assessment was undertaken using productivity‐susceptibility analysis (PSA) to determine the relative vulnerability of 52 species caught by fisheries in the waters off eastern Taiwan. Overall, eight and 20 species were classified as having high and moderate vulnerability, respectively, and the remaining 24 species were classified as having low vulnerability. The species with the highest vulnerability scores were caught mainly by longline and gillnet fisheries, highlighting the need for improved data collection to facilitate a more detailed investigation using more quantitative methods. The data quality analysis indicated that the quality of data was classified as “moderate” for economically important species. However, many species were considered data‐limited and thus collecting high‐resolution catch and effort information and conducting biological studies, especially relating to age, growth and reproduction, are recommended to improve the reliability of outputs from data‐limited assessments such as PSA.     

Broadbill swordfish: status of established fisheries and lessons for developing fisheries

Guidelines for the assessment and management of developing swordfish fisheries are derived through an examination of five swordfish fisheries. As they develop, swordfish fisheries may be inclined to local depletion around underwater features, such as seamounts and banks. Few nations have applied the precautionary approach in managing their developing swordfish fisheries. Without controls, swordfish fisheries expand geographically and fishing effort increases, often overshooting optimum levels. However, it is difficult to distinguish clear evidence of fishery collapse; modern longliners harvest widely distributed tuna and swordfish and they are able to relocate to distant areas or switch between target species in response to fluctuations in species abundance and price. Furthermore, the wide distribution of swordfish combined with year‐round spawning and high growth rates amongst juveniles probably contribute to the apparent resilience of swordfish stocks to intensive harvesting. Over half the world’s swordfish catch is taken as an incidental catch of longliners fishing for tuna. In several areas, such as the North Atlantic, catch quotas have sometimes caused tuna longline fishers to discard swordfish. Minimum size limits have also resulted in discarding of swordfish in tuna fisheries and in dedicated swordfish fisheries. In addition to weakening the effectiveness of those management measures, bycatch and discarding add to the complexities of managing swordfish fisheries and to uncertainties in assessing the stocks. Longliners that target swordfish often fish at high latitudes where interactions with marine wildlife, such as seabird, are generally more frequent than at low latitudes. Concern over incidental catches of marine wildlife and other species is becoming a driving force in the management of several swordfish fisheries. Fishery management organisations will need to implement management measures to protect non‐target species and gather reliable data and information on the situation by placing observers on boats fishing for swordfish.     

A cross‐taxa assessment of pelagic longline by‐catch mitigation measures: conflicts and mutual benefits to elasmobranchs

Elasmobranch mortality in pelagic longline fisheries poses a risk to some populations, alters the distribution of abundance between sympatric competitors, changing ecosystem structure, processes and stability. Individual and synergistic effects on elasmobranch catch and survival from pelagic longline gear factors, including methods prescribed to mitigate bycatch of other vulnerable taxa, were determined. Overall relative risk of higher circle vs. J‐shaped hook shark catch rates conditioned on potentially informative moderators, from 30 studies, was estimated using an inverse‐precision weighted mixed‐effects meta‐regression modelling approach. Sharks had a 1.20 times (95% CI: 1.03–1.39) significantly higher pooled relative risk of capture on circle hooks, with two significant moderators. The pooled relative risk estimate of ray circle hook catch from 15 studies was not significant (RR = 1.22, 95% CI: 0.89–1.66) with no significant moderators. From a literature review, wire leaders had higher shark catch and haulback mortality than monofilament. Interacting effects of hook, bait and leader affect shark catch rates: hook shape and width and bait type determine hooking position and ability to sever monofilament leaders. Circle hooks increased elasmobranch catch, but reduced haulback mortality and deep hooking relative to J‐shaped hooks of the same or narrower width. Using fish vs. squid for bait increased shark catch and deep hooking. Pelagic stingray (Pteroplatytrygon violacea) catch and mortality were lower on wider hooks. Using circle instead of J‐shaped hooks and fish instead of squid for bait, while benefitting sea turtles, odontocetes and possibly seabirds, exacerbates elasmobranch catch and injury, therefore warranting fishery‐specific assessments to determine relative risks.     

Hawaii longline tuna fishery temporal trends in standardized catch rates and length distributions and effects on pelagic and seamount ecosystems

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Sex-structured population dynamics of blue marlin Makaira nigricans in the Pacific Ocean

The population dynamics of the blue marlin Makaira nigricans stock in the Pacific Ocean were estimated for 1971–2011 using a fully integrated length-based, age-, and sex-structured model. Fishery-specific catch, size composition, and catch-per-unit of effort were used in the modeling as likelihood components. Estimated dynamics were consistent with a stock that is fully exploited and stable over the last several years. No significant trends in recruitment were noted; however, female blue marlin were estimated to make up a majority of the catch, and historical exploitation has disproportionately changed the age structure of females relative to males. This result is due to differences in assumed life history and estimated selectivity. Changes to important life history parameters that are responsible for the productivity of the stock would potentially change the interpretation of current stock status.     

基于渔船捕捞行为特征的远洋延绳钓渔场捕捞强度计算

渔场捕捞强度信息可以为渔业资源评估和管理提供帮助。本研究结合2017年10—11月船舶自动监控系统(AutomaticIdentificationSystem,AIS)信息和同期中国中西太平洋延绳钓渔船捕捞日志数据,通过挖掘延绳钓渔船作业航速和航向特征,建立渔场作业状态识别模型,提取渔场捕捞强度信息。以3～9节为航速阈值和0°～10°及300°～360°为航向阈值,渔船作业状态识别准确率为68.29%。阈值识别和日志记录的捕捞强度信息在空间上相关性很高(0.96),基于AIS信息挖掘的渔船捕捞强度空间分布特征和实际非常相似。阈值识别和日志记录的捕捞强度信息在空间上与单位捕捞努力量渔获量(catch per unite of effort, CPUE)、渔获尾数、渔获重量和投钩数的空间相关系数均大于0.62,基于AIS信息挖掘的渔船空间捕捞强度也可替代用于渔业资源分析。     

Reducing sea turtle by-catch in pelagic longline fisheries

Reducing by‐catch of sea turtles in pelagic longline fisheries, in concert with activities to reduce other anthropogenic sources of mortality, may contribute to the recovery of marine turtle populations. Here, we review research on strategies to reduce sea turtle by‐catch. Due to the state of management regimes in most longline fisheries, strategies to reduce turtle interactions must not only be effective but also must be commercially viable. Because most research has been initiated only recently, many results are not yet peer‐reviewed, published or readily accessible. Moreover, most experiments have small sample sizes and have been conducted over only a few seasons in a small number of fisheries; many study designs preclude drawing conclusions about the independent effect of single factors on turtle by‐catch and target catch rates; and few studies consider effects on other by‐catch species. In the US North Atlantic longline swordfish fishery, 4.9‐cm wide circle hooks with fish bait significantly reduced sea turtle by‐catch rates and the proportion of hard‐shell turtles that swallowed hooks vs. being hooked in the mouth compared to 4.0‐cm wide J hooks with squid bait without compromising commercial viability for some target species. But these large circle hooks might not be effective or economically viable in other longline fisheries. The effectiveness and commercial viability of a turtle avoidance strategy may be fishery‐specific, depending on the size and species of turtles and target fish and other differences between fleets. Testing of turtle avoidance methods in individual fleets may therefore be necessary. It is a priority to conduct trials in longline fleets that set gear shallow, those overlapping the most threatened turtle populations and fleets overlapping high densities of turtles such as those fishing near breeding colonies. In addition to trials using large 4.9‐cm wide circle hooks in place of smaller J and Japan tuna hooks, other fishing strategies are under assessment. These include: (i) using small circle hooks (≤ 4.6‐cm narrowest width) in place of smaller J and Japan tuna hooks; (ii) setting gear below turtle‐abundant depths; (iii) single hooking fish bait vs. multiple hook threading; (iv) reducing gear soak time and retrieval during daytime; and (v) avoiding by‐catch hotspots through fleet communication programmes and area and seasonal closures.     

Factors influencing the at-haulback mortality of striped marlin Tetrapturus audax caught by tuna longline fishery in the western Indian Ocean

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Integrating recreational fisheries data into stock assessment: implications for model performance and subsequent harvest strategies

Understanding the impacts of recreational fishing on commercially fished stocks is becoming increasingly relevant for fisheries managers. However, data from recreational fisheries are not commonly included in stock assessments of commercially fished stocks. Simulation models of two assessment methods employed in Australia's Commonwealth fisheries were used to explore how recreational fishery data can be included, and the likely consequences for management. In a data‐poor management strategy for blue eye trevalla, Hyperoglyphe antarctica (Carmichael), temporal trends in recreational catch most affected management outcomes. In a data‐rich age‐structured stock assessment for striped marlin, Kajikia audax (Philippi), estimates of stock status were biased when recreational catches were large or when the recreational fishery targeted different size classes than the commercial fishery and these data were not integrated into the assessment. Including data from recreational fishing can change perceptions of stock status and impact recommendations for harvest strategies and management action. An understanding of recreational fishery dynamics should be prioritised for some species.     

Complex dynamics may limit prediction in marine fisheries

Complex nonlinear dynamics in marine fisheries create challenges for prediction and management, yet the extent to which they occur in fisheries is not well known. Using nonlinear forecasting models, we analysed over 200 time series of survey abundance and landings from two distinct ecosystems for patterns of dynamic complexity (dimensionality and nonlinear dynamics) and predictability. Differences in system dimensionality and nonlinear dynamics were associated with time series that reflected human intervention via fishing effort, implying the coupling between human and natural systems generated dynamics distinct from those detected in the natural resource subsystem alone. Estimated dimensionality was highest for landings and higher in abundance indices of unfished species than fished species. Fished species were more likely to display nonlinear dynamics than unfished species, and landings were significantly less predictable than abundance indices. Results were robust to variation in life history characteristics. Dynamics were predictable over a 1‐year time horizon in seventy percent of time series, but predictability declined exponentially over a 5‐year horizon. The ability to make predictions in fisheries systems is therefore extremely limited. To our knowledge, this is the first cross‐system comparative study, and the first at the scale of individual species, to analyse empirically the dynamic complexity observed in fisheries data and to quantify predictability broadly. We outline one application of short‐term forecasts to a precautionary approach to fisheries management that could improve how uncertainty and forecast error are incorporated into assessment through catch limit buffers.     

Shifting trophic architecture of marine fisheries in New Zealand: Implications for guiding effective ecosystem‐based management

New Zealand has led the world in restoration of marine fisheries since the introduction of the Quota Management System in 1986, but challenges remain in minimizing the ecosystem‐level effects of industrialized fishing. We analysed existing long‐term fisheries data sets from 1931 to 2015 in New Zealand to resolve trends in important ecological properties of major exploited fish communities. Increases in community dissimilarities of catch composition in 1931 and 1972, followed by increasing total landings, highlight major expansions of fishing grounds and exploited species during these periods. Mirroring global patterns, the remarkable rise in fishing power, demand and generation of new markets in New Zealand have all contributed to this expansion. Marine Trophic Indices (MTIs) of landings have decreased together with total catch after the year 2000, reflecting smaller catches with a higher composition of lower trophic‐level species in recent years. Differences in relative abundance of species estimated between fisheries‐dependent and fisheries‐independent data were observed, where high‐value species displayed better agreement in relative abundance between data sets. Despite being under a Quota Management System, temporal development of MTI values relative to the timing of industrial expansion of fisheries was remarkably similar to those observed in the North Sea and Brazil, with a single expansion and decline. MTI values presented better long‐term stability in the US fisheries analysed. Analysis of long‐term data and the development of well‐resolved ecological baselines will be the first step towards applying EBM to New Zealand fisheries, in keeping with global trends in fisheries management.     

Sea turtle by‐catch in the Mediterranean

Sea turtle by‐catch data in the Mediterranean were reviewed and analysed with fishing effort. The results indicate over 132 000 captures per year, with probably over 44 000 incidental deaths per year, while many others are killed intentionally. Small vessels using set net, demersal longline or pelagic longline represent most of the Mediterranean fleet and likely cause more incidental or intentional deaths than large vessels typically using bottom trawl or pelagic longline. When interactions, mortality, intentional killing, size (a proxy for reproductive value) and turtle populations are considered, results indicate that Mediterranean green (Chelonia mydas) and loggerhead turtles (Caretta caretta) are more affected (i) by fishing gears such as bottom trawlers, demersal longlines and set nets, (ii) by small‐scale fisheries, and (iii) by fishing in the eastern basin. Although small‐scale fisheries should be the priority target, available measures are easier to implement on the fewer large vessels. Moreover, these measures are few, and they are not implemented yet, while others should still be tested for the Mediterranean fisheries. Thus, measures for reducing captures or mortality through changing gear‐specific characteristics may help, but probably a more holistic conservation strategy aimed to an ecosystem‐based fishery management for a sustainable fishing would be the only solution for the long‐term survival of Mediterranean Sea turtle populations and their habitats. Small‐scale fisheries should manage marine resources, including turtles, in a responsible and sustainable way. Turtles may not only benefit from but can also help this process if their non‐consumptive value is fully recognized.