Molecular characterization of short-day onion genotypes by intron length polymorphic (ILP) markers

Genetic Resources and Crop Evolution - Onion (Allium cepa L.) is an economically important vegetable that is in high demand around the world. It is a highly cross pollinated crop, which could...     

Sampling Strategies and Soil Characteristics for Estimation of Plant Patches Dimensions (Case Study: Inchebroun Rangelands,Golestan Province,Iran)

Survey and monitoring rangelands projects is one the important plans in rangelands management. For this purpose, the survey and monitoring methods could be time-consuming and costly. Sampling strategies of plant patches are effective in sampling procedures that cause minimizing sampling variance and time. In this study, for decreasing sampling time and cost, increasing speed, plant patches parameters (including length, width, height, area, and distance between the patches) were compared. Three transects with 50 m length at three aspect slopes were located randomly systematic at the selected site with different grazing intensities. Soil samples for nitrate (NO₃^?), total nitrogen (TN), ammonium (NH₄⁺), phosphorus (P), sodium absorption ration (SAR), soil acidity or soil reaction (pH), sodium (Na), electrical conductivity (EC), organic carbon (OC), and potassium (K) content were taken in these transects. The data were subjected to analysis of variance (ANOVA), and the average of the measured parameters in the transects was compared by Duncan Multiple Range test using SPSS₁₆ software. The soil characteristics compared between the regions were analyzed with Discriminant Function Analysis using STATISTICA₁₀ software. Results showed that the transect slope aspect and soil characteristics had an effect on measured parameters. It was suggested to withdraw the located transect at one of the North or South and West or East Slope aspects for increasing sampling efficiency. It was also suggested that to avoid time consumtion, sampling can be recorded on plant patches’ width instead of area. It is also suggested that it would be better to record the length of the plant patches instead of their area in the non-grazed zones and record the length and the width of the plant patches in the moderate- and the high-grazed zones.     

Assessment of deforestation impact on soil erosion in loess formation using 137Cs method (case study: Golestan Province,Iran)

Golestan, a province in the North-East of Iran, is characterized by high coverage of loess deposits. Since 1963, the area has experienced approximately 200,000 ha deforestation due to land-use changes in agriculture and increasing demand for wood. Approximately, 110,000 ha of the clear-cut lands are under dry-farming, mainly for wheat cropping, and about 86,000 ha have been reforested. This IAEA funded project is the first attempt to use nuclear techniques in the East of Hircanian Forest for determination of on-site impacts of deforestation due to two land-use changes (i.e. dry farming and reforestation). Practicing long-term dry-farming led to 60% soil losses with a mean rate of 2 mm per year. The net erosion rate of croplands on loess deposits in the study area was 32.27 t ha⁻¹ yr⁻¹. Reforestation, cultivation of even-aged Cypress trees since 1993, showed 13 to 60 percent effectiveness in soil conservation. Dry-farming land use resulted in the loss of 95 t ha⁻¹ soil organic carbon (SOC) stock at a mean rate of 1.7 t ha⁻¹ over 54 years. Cultivating Cypress trees successfully restored the SOC content by 100% compared with the SOC in original forests. The conversion of dry-farming lands to orchards of olive trees since 2004, brought more income for farmers but were less effective in soil conservation because of low canopy cover of olive trees. Our data provide key information and guidance for land users and decision-makers about implementing strategic and sustainable conservation practices to restore degraded land.     

Isolation and characterization of a new hydroxytyrosol derivative from olive (Olea europaea) leaves

A new secoiridoid compound was isolated from the leaves of Olea europaea. This compound, not previously identified, is the bis methylacetal of oleuropein aglycone, the 3,4-dihydroxyphenylethyl [(2,6-dimethoxy-3-ethylidene)-tetrahydropyran-4-yl]acetate (3,4-DHPEA-DETA), and was found in different olive cultivar phenolic extracts as one of the major secoiridoid components. This compound was shown to be easily transformed in acidic aqueous media into 3,4-DHPEA-EDA, the major polyphenolic compound found in olive oil, and permitted us to increase the yield of 3,4-DHPEA-EDA isolation from the olive leaf extract. The antiradical activity of this new compound, evaluated by scavenging of 2,2-diphenyl-1-picrylhydrazyl radicals, was much higher than the one found for 3,4-DHPEA-EDA or alpha-tocopherol. Results also call to attention the need for a careful identification of compounds by HPLC-MS, usually performed in acidic conditions.     

Recovery and characterization of the metal polymeric organic fraction (polymerin) from olive oil mill wastewaters

A dark and complex metal polymeric organic mixture, named polymerin, was recovered from olive oil mill wastewaters (OMWW) and characterized by chemical analysis, diffuse reflectance infrared Fourier transform spectroscopy (DRIFTS), and atomic absorption spectrometry (AAS). Polymerin proved to be composed of carbohydrates (52.40 mg 100(-1), w/w), melanin (26.14 mg 100(-1)), and proteins (10.40 mg 100(-1)), and the respective composition of monosaccharides, phenols, and amino acids was determined. It also contained metals (11.06 mg 100(-1)), mainly K(+) and, to a lesser extent, Na(+), Ca(2+), Mg(2+), Zn(2+), Fe(3+), and Cu(2+), which were naturally bound and chelated through carboxylate anions and other characteristic nucleophilic functional groups naturally occurring in polymerin. The distribution of polymerin relative molecular size was assessed to be approximately between 500.0 and 2.0 kDa by calibrated molecular weight gel filtration chromatography, indicating also that a fraction consisted of protein, melanin, and polysaccharide, strongly aggregated to each other in a supramolecular status by a combination of covalent and hydrogen bonds and CH/Pi interactions, and another fraction of only free polysaccharide. Polymerin was transformed into a potassium salt deglycosylated derivative, named KSDpolymerin, which was also characterized by chemical analysis, DRIFTS, and AAS. KSDpolymerin consisted of carbohydrates (6.00 mg 100(-1)), melanin (52.49 mg 100(-1)), and proteins (35.40 mg 100(-1)), and the composition of monosaccharides, phenols, and amino acids was determined. It also contained metals (6.11 mg 100(-1)), mainly K(+) and to a lesser extent Na(+), Ca(2+), Mg(2+), Zn(2+) and Fe(3+), bound as in polymerin. All the organic components were strongly linked in a supramolecular aggregate status and the relative average molecular size proved to be 6.3 kDa. Finally, we briefly discuss the possible use of such polymerins in agriculture as bioamendments and macro- and microelement biointegrators and as a biofilter for toxic metal removal, in light of their similarity with humic acids.     

Optimization of microwave-assisted extraction for the characterization of olive leaf phenolic compounds by using HPLC-ESI-TOF-MS/IT-MS(2)

In the present work, a simple and rapid method for the extraction of phenolic compounds from olive leaves, using microwave-assisted extraction (MAE) technique, has been developed. The experimental variables that affect the MAE process, such as the solvent type and composition, microwave temperature, and extraction time, were optimized using a univariate method. The obtained extracts were analyzed by using high-performance liquid chromatography (HPLC) coupled to electrospray time-of-flight mass spectrometry (ESI-TOF-MS) and electrospray ion trap tandem mass spectrometry (ESI-IT-MS(2)) to prove the MAE extraction efficiency. The optimal MAE conditions were methanol:water (80:20, v/v) as extracting solvent, at a temperature equal to 80 °C for 6 min. Under these conditions, several phenolic compounds could be characterized by HPLC-ESI-MS/MS(2). As compared to the conventional method, MAE can be used as an alternative extraction method for the characterization of phenolic compounds from olive leaves due to its efficiency and speed.     

Molecular characterization of emmer (Triticum dicoccon Schrank) Italian landraces

Emmer (Triticum dicoccon Schrank,2n = 4x = 28) is a hulled wheatspecies [more] widely spread in the Mediterranean basin. In Italy it survives as acrop in a few marginal areas and peculiar ecological niches in different regionsof central and southern Italy. A renewed interest has occurred during the lastdecade toward local varieties belonging to this species. As a matter of fact,local varieties have the highest genetic variation and adaptation to the naturaland anthropological environment from where they originated. Results on thegenetic diversity within and relationships among 11 Italian local varieties ofemmer as assessed with 17 RAPD marker loci are here reported. The proportion ofthe among-local variety genetic diversity was as high as 48% (G_ST =0.479). Thus, about 52% of the total variation was within population. Localvarieties of emmer proved to be formed by a variable number of lines geneticallydistinguishable from each other, and the vast majority of individuals overpopulations proved to be different multilocus genotypes. Landraces of emmer fromcentral and southern Italy showed distinctive molecular traits. In particular,local varieties classified as «Central Italy» types were characterized by a common set of RAPD marker alleles and proved to bedistinguishable from both the «Southern Italy» and the«Garfagnana» accessions. The overall results confirm the highvariability that can be found within landrace populations, underlining thevalues of landraces as an irreplaceable bank of genetically diversified andhighly co-adapted genotypes. Information for an appropriate insitu conservation and management of this valuable source of emmergermplasm is discussed.     

Geographical characterization of italian extra virgin olive oils using high-field (1)H NMR spectroscopy.

1H high-field nuclear magnetic resonance (NMR) was used to analyze 216 extra virgin olive oils collected in three years (1996, 1997, and 1998) in different Italian areas in order to evaluate the potential contribution of this technique to the geographical characterization of olive oils. A statistical procedure performed on the intensity of selected NMR peaks has been proposed. Tree clustering analysis of NMR data performed without any a priori hypothesis showed the existence of reliable parameters able to group the olive oils according to the location of olive oil production. Linear discriminant analysis applied to selected NMR parameters of olive oils of the same year of production allowed the grouping of samples according to their geographical origin with only very few errors. Moreover, a satisfactory grouping is reached by combining the NMR data of olive oils from two different years (1996 and 1997). Operating on appropriate sampling, a careful analysis of data yielded the conclusion that the place of olive production could be singled out as a discriminating factor regardless of the cultivars from which the olive oils are derived.     

Isolation and characterization of the antioxidant component 3,4-dihydroxyphenylethyl 4-formyl-3-formylmethyl-4-hexenoate from olive (Olea europaea) leaves

Storage of olive (Olea europaea) leaves for 22 h at 37 degrees C in closed plastic bags caused the content of a nonglycosidic secoiridoid, 3,4-dihydroxyphenylethyl 4-formyl-3-formylmethyl-4-hexenoate (3,4-DHPEA-EDA) to rise from 15% to 50% of the phenolic extract with corresponding falls in the content of oleuropein and two oleuropeindials, which were identified as precursors of 3,4-DHPEA-EDA. Pure product was isolated from one set of stored olive leaves in a 0.16% yield. Storage of olive leaves under various conditions showed that the moisture present in closed plastic bags was important for the formation of 3,4-DHPEA-EDA. The time taken to reach the maximum concentration of the product varied widely for different samples of olive leaves, with a shorter time for the sample with lower initial oleuropein content. The oleuropeindial precursors of the product were readily hydrolyzed to carboxylic acid derivatives, which have been identified by NMR. The antiradical activity of 3,4-DHPEA-EDA, evaluated by scavenging of 2,2-diphenyl-1-picrylhydrazyl radicals, was comparable to that of alpha-tocopherol.     

Growth,morphological and yield responses of irrigated wheat (Triticum aestivum L.) genotypes to water stress

Water shortages is a major constraint in wheat production in South Africa. It is important therefore to assist irrigated wheat farmers to identify water stress tolerant growth stages in irrigated wheat genotypes. This study evaluated new wheat genotypes for water stress at different growth stages. An 8 (genotypes) × 2 (water treatments) × 3 (growth stages) factorial experiment was laid out in a randomised complete block design with three replicates. The results indicated that plant height was not affected (p > .05) by water stress at tillering and grain filling. Water stress imposed at the tillering stage reduced the number of fertile tillers (p < .05) in susceptible genotypes while at the flowering and grain filling stages all genotypes were tolerant (p > .05). Aboveground biomass was only affected (p < .05) by water stress imposed at the tillering stage. Water stress reduced grain yield on the genotypes where stress was imposed at the tillering stage (p < .05); whereas when stress was imposed at flowering and grain filling the grain yield was not reduced (p > .05). This study provided evidence to suggest that most genotypes were tolerant to water stress at the flowering and grain filling stages.     

Detection of the presence of hazelnut oil in olive oil by FT-raman and FT-MIR spectroscopy

The detection of the presence of refined hazelnut oil in refined olive oil at low percentages is still a challenge with the current official standards. FT-Raman and FT-MIR spectroscopies have been used to determine the level of detection of the presence of hazelnut oil in olive oil. Spectroscopic analysis has been made not only with the entire oil but also with its unsaponifiable matter. Univariate and multivariate statistical models have been designed with this objective. This study shows that a complete discrimination between olive and hazelnut oils is possible and that adulteration can be detected if the presence of hazelnut oil in olive oil is >8% and if the blends are of Turkish olive and hazelnut oils. The limit of detection is higher when the blends are of edible oils from diverse geographical origins.     

Genetic diversity and population structure of Leucaena leucocephala (Lam.) de Wit genotypes using molecular and morphological attributes

Genetic Resources and Crop Evolution - For the estimation of genetic diversity and population structure, 23 accessions of Leucaena leucocephala were characterized using morphological and molecular...     

Savadkouh (Iran) – an Evolutionary Centre for Fruit Trees and Shrubs

Fieldwork was carried out in the north of Iran in April/May 2004. Four zones according to altitude including 20 villages and especially surrounding forests were visited. Data on uses and ethnobotany was collected through interviews that were one-on-one with respondents carefully selected to represent both male and female. Additionally a general survey of the area including other places of Savadkouh has been performed. The fruit trees and shrubs include Berberis sp., Crataegus sp., Cydonia oblonga, Diospyros lotus, Ficus carica, Malus orientalis, Mespilus germanica, Prunus cerasifera ssp. macrocarpa, Prunus spinosa, Punica granatum, and Rubus sp. Most of these are gathered from the wild, or occasionally cultivated in homegardens. The results of this study show that all of these species are used as sources of local foods and medicines. The area should be considered as an important evolutionary centre for fruit trees and shrubs and should be taken into serious consideration for discussions about fruit tree and shrub evolution. Germplasm collection activities, in situ conservation programs and interdisciplinary analysis of socioeconomic aspects of rural communications will be necessary in future studies.     

Morphological and molecular characterization of garlic (Allium sativum L.) genotypes sampled from Turkey

Genetic Resources and Crop Evolution - Garlic is a vegetable widely used both in food and as a pharmaceutical raw material in the world due to its contents. Although morphological differences are...     

Identification and characterization of foliar polyphenolic composition in sweetpotato (Ipomoea batatas L.) genotypes

Trials over two years were conducted using 1389 sweetpotato (Ipomoea batatas L.) genotypes collected from all over the world to characterize the polyphenolic composition in sweetpotato leaves. Wide variation was observed in relation to their total and individual leaf polyphenolic constituents. In all genotypes studied, the total polyphenol contents of sweetpotato leaf ranged from 1.42 to 17.1 g/100 g dry weight. The six different polyphenolic compounds were identified and quantified by NMR, FABMS, and RPHPLC analysis procedures. This is the first report of polyphenolic compositions in sweetpotato leaves. The relative levels of polyphenolic acids in sweetpotato leaves were as follows: 3,5-di-O-caffeoylquinic acid > 4,5-di-O-caffeoylquinic acid > chlorogenic acid (3-O-caffeoylquinic acid) > 3,4-di-O-caffeoylquinic acid > 3,4,5-tri-O-caffeoylquinic acid > caffeic acid. The highest 3,4,5-tri-O-caffeoylquinic acid and 4,5-di-O-caffeoylquinic acid occurred at 221 and 1183.30 mg/100 g dry weight, respectively.     

Microsatellite and morphological characterization of three Rostrato di Val Chiavenna (Sondrio,Italy) maize (Zea mays L.) accessions

Genetic Resources and Crop Evolution - Beaked corn represents one of the most characteristics and neglected group of Italian maize landraces. These genotypes, classified in the...     

Influence of harvesting method and washing on the presence of pesticide residues in olives and olive oil

The influence of the preliminary steps in olive oil production (harvesting and washing) on pesticide residues in olives and olive oil has been investigated. Analyses were performed by GC-MS/MS and revealed that endosulfan sulfate and two herbicides (diuron and terbuthylazine) were the most frequently found residues in olives and olive oil. The harvesting method has a decisive influence on herbicide concentrations found in olives. Thus, 16 and 48% of the olive samples harvested on the ground after falling from the tree presented concentrations higher than the maximum residue limit (MRL) for diuron and terbuthylazine, respectively. In olives harvested directly from the tree, diuron was not found at concentrations higher than MRL and terbuthylazine was found in only 10% of the samples. The washing step performed routinely in olive mills was effective in removing the superficial contamination by herbicides present in olives harvested on the ground. Nevertheless, even after washing, the olive oil obtained from ground olives showed herbicide residue concentrations higher than those obtained from tree olives.