Reclassification of aster yellows group phytoplasmas in Korea

Aster yellows group phytoplasmas were reclassified by analysis of the 16S rRNA gene sequence, their phylogeny and the presence of interoperon heterogeneity. Nine phytoplasmas were classified into subgroups 16SrI-B and 16SrI-D using the 16S rRNA gene sequence. Then, based on the presence of interoperon heterogeneity, subgroup 16SrI-B phytoplasmas were differentiated into three subunits as 16SrI-B(a): mulberry dwarf, sumac witches’ broom and porcelain vine witches’ broom; 16SrI-B(b): angustata ash witches’ broom and Japanese spurge yellows; and 16SrI-B(c): onion yellow dwarf, water dropwort witches’ broom and hare’s ear yellow dwarf phytoplasma.     

Use of heteroduplex mobility assay for identification and differentiation of phytoplasmas in the aster yellows group and the clover proliferation group

ABSTRACT This paper describes the identification and differentiation of phytoplasmas by a highly sensitive diagnostic technique, DNA heteroduplex mobility assay (HMA). Closely related phytoplasma isolates of clover proliferation (CP), potato witches'-broom (PWB), and alfalfa witches'-broom (AWB) were collected from the field from 1990 to 1999. The entire 16S rRNA gene and 16/23S spacer region were amplified by polymerase chain reaction (PCR) from the field samples and standard CP, PWB, and AWB phytoplasmas and were subjected to restriction fragment length polymorphism (RFLP) analysis and HMA. Two subgroups (I and II) of phytoplasmas in the CP group were identified by HMA but not by RFLP analysis. The results were confirmed by 16/23S spacer region sequence data analysis. After HMA analyses of the PCR-amplified 16/23S spacer region, 14 phytoplasma isolates from field samples were classified into two aster yellows subgroups: subgroup I, phytoplasma isolates from China aster (Callistephus chinensis) yellows, French marigold (Tagetes patula) yellows, cosmos (Cosmos bipinnatus cv. Dazzler) yellows, clarkia (Clarkia unguiculata) yellows, California poppy (Eschscholzia californica cv. Tai Silk) yellows, monarda (Monarda fistulosa) yellows, and strawflower (Helichrysum bracteatum) yellows; and subgroup II, phytoplasma isolates from zinnia (Zinnia elegans cv. Dahlia Flower) yellows, Queen-Annes-Lace (Daucus carota) yellows, scabiosa (Scabiosa atropurpurea cv. Giant Imperial) yellows, Swan River daisy (Brachycombe multifida cv. Misty Pink) yellows, pot marigold (Calendula officinalis) yellows, purple coneflower (Echinacea purpurea) yellows, and feverfew (Chrysanthemum parthenium) yellows. The results indicate that HMA is a simple, rapid, highly sensitive and accurate method not only for identifying and classifying phytoplasmas but also for studying the molecular epidemiology of phytoplasmas.     

Weed control in conventional and herbicide tolerant winter oilseed rape (Brassica napus) grown in rotations with winter cereals in the UK

Two winter oilseed rape (Brassica napus) cultivars, tolerant to glyphosate and glufosinate, were compared with a conventional cultivar at three sites over 4 years, in 3‐year crop rotations in the UK. The winter oilseed rape was grown in Years 1 and 4, with winter cereals, which received uniform herbicide treatments, in the intervening years. The second winter oilseed rape treatments were applied to randomised sub‐plots of the original plots. Weed densities were recorded in autumn and spring and weed biomass was measured in summer. At most sites, there was only one application of glufosinate or glyphosate, whereas two products were often used on the conventional variety. The timing of glyphosate and glufosinate application was, on average, 34 days later than that of the conventional broad‐leaved weed control treatments. Overall weed control, across all sites and years, was not statistically different between the conventional, glyphosate and glufosinate treatments. However, glyphosate achieved higher control of individual weed species more frequently than the other treatments. Glufosinate and the conventional treatments were similar in performance. The treatments in Year 1 sometimes affected weed populations in the subsequent cereal crops and, in rare instances, those in the rape in Year 4. Carry‐over effects were small after most treatments. In general, weed survival was greater in the oilseed rape crops, irrespective of the treatment, than it was in the intervening cereal crops.     

Detection and differentiation of grapevine yellows phytoplasmas belonging to the elm yellows group and to the stolbur subgroup by PCR amplification of non-ribosomal DNA

Primer pairs were designed from a cloned DNA probe of a strain of flavescence dorée (FD) phytoplasma and from a cloned DNA probe of a strain of stolbur phytoplasma. Among an array of reference phytoplasma strains maintained in periwinkle, pair FD9f/r amplified a 1.3 kb DNA fragment only with phytoplasma strains of elm yellows (EY) group, i.e. two strains of FD and two strains of EY. Tru9I restriction analysis of the fragment amplified by FD9f/r revealed a diversity among EY-group phytoplasmas. The FD strains differed from the strains isolated from elm. The profile of the phytoplasmas infecting the grapevine samples from Catalonia and most of the samples from Northern Italy were identical to that of a FD strain. Three other profiles were detected in grapevine from Palatinate, in Germany.The two primer pairs derived from a stolbur strain, STOL4f/r and STOL11f2/r1, specifically amplified a 1.7 kb and a 0.9 kb DNA fragment, respectively, with all strains in the stolbur subgroup. However, the pair STOL4f/r did not recognise strain MOL. Both pairs allowed to detect phytoplasmas in diseased grapevines from France, Italy, Spain and Israel. Attempts to differentiate between phytoplasmas in the stolbur subgroup by restriction analyses failed. The pairs FD9f/r and STOL11f2/r1 could be used in the same reaction (multiplex PCR) to detect EY-group phytoplasmas, stolbur-subgroup phytoplasmas or both phytoplasmas simultaneously when template DNAs were mixed.     

Electron microscopy and molecular identification of phytoplasmas associated with strawberry green petals in the Czech Republic

The presence of phytoplasma inFragaria ananassa x Duch cv Senga Sengana showing strawberry green petals symptoms was observed by electron microscopy of phloem tissue. No phytoplasmas were found in asymptomatic strawberry plants used as controls. Nucleic acids extracted from these plants were used in nested-PCR assays with primers amplifying 16S rRNA sequences specifie for phytoplasmas. Bands of 1.2 kb were obtained and the subsequent nested-PCR with specific primers and RFLP analyses allowed to classify the detected phytoplasmas in the aster yellows group (16SrI). They belonged to the subgroup I-C of which type strain is clover phyllody phytoplasma.     

Predicting the risk of weed infestation in winter oilseed rape crops

Chemical weed control before crop and weed emergence is a systematic practice in winter oilseed rape crops in France. It would be profitable both for farmers and the environment to predict the level of weed infestation early on in the growing season and to control weeds only when necessary using post‐emergence weed control. The objective of this paper was to develop and evaluate simple models to predict weed biomass in oilseed rape crops. The model input variables were related to weed population characteristics and farmers’ practices. The models can be used to classify oilseed rape plots into two categories: plots with a level of weed infestation above a threshold or those with level of weed infestation below a threshold. A data set including 3 years of experiments, conducted across several regions in France, was used to estimate the parameters and to evaluate the models. High values of sensitivity and specificity were obtained when weed biomass was predicted as a function of sowing date, type of soil tillage, soil mineral nitrogen, crop density, weed density at emergence, and main characteristics of the most abundant weed species. Model performance strongly decreased when input variables related to the weed population were not taken into account. The best models correctly classified 90% of the plots with high weed infestation and 64% of the plots with low weed infestation.     

Screening for resistance to canker (Leptosphaeria maculans) in winter oilseed rape (Brassica napus ssp. oleifera)

A test involving infection of seedlings in a glasshouse was evaluated for potential use in screening breeding material by comparing the results with those of field tests. The two tests correlated well for some resistant selections, particularly those closely related to Jet Neuf, and for very susceptible selections. However, two small groups of selections were resistant in the field but consistently susceptible in the glasshouse. Inoculation of mature plants in the glasshouse resulted in similar discrepancies and therefore gave no advantage over the seedling test. These discrepancies limit the usefulness of glasshouse techniques for routine resistance screening. A very high correlation was found overall between internal and external canker symptoms of the crown in nine field trials. Significant differences were found, however, between selections and cultivars in the relative severity of these two symptoms. Upper stem canker and crown canker were found to be very poorly correlated for individual plants, but highly correlated for eultivar means. The significance of these observations is discussed with respect to scoring canker in the field.     

Pathogenic variability of Plasmopara halstedii infecting sunflower in the Czech Republic

Plasmopara halstedii was isolated from diseased sunflowers collected from eight locations in the Czech Republic from 2007 to 2014. Races of the pathogen were determined based on 84 isolates collected during the study. In total, eight races of P. halstedii were detected using a set of nine sunflower differential lines. Races 700, 704, 705, 710, 714 and 715 were proven by soil drench inoculation, and two additional races (730 and 770) proposed by the previously applied leaf disc inoculation method. Race 700 was the most dominant in the Czech P. halstedii populations, with race 710 being the second most frequent. Races 704 and 714 were found over three seasons, while other races were recorded only in one growing season (race 730 in 2010, and the new races 705 and 715 in 2014). A comprehensive study was further conducted for isolates collected in 2013–14 using an extended differential set consisting of 15 sunflower lines. According to the latter methodology which marks races with five‐digit virulence codes, races 70060, 70471, 70571, 71060, 71461 and 71571 were recorded. The growing complexity of P. halstedii pathogenicity exhibited by the ability to infect higher numbers of differential genotypes and resulting in determination of the new pathogen races (virulence profiles) 70571, 71461 and 71571 is alarming. Although the limited number of isolates studied cannot characterize the entire pathogen diversity in the Czech Republic, the trend towards more diverse virulence in P. halstedii populations is clearly demonstrated by the new records of races 704, 705, 714 and 715, all capable of overcoming the resistance gene Pl₆.     

A review of the relationship between primary and secondary dormancy,with reference to the volunteer crop weed oilseed rape (Brassica napus)

Fresh seeds of oilseed rape (Brassica napus) are reported to be nondormant and nonphotoblastic. However, a portion of the seeds can be induced into a light‐requiring state (secondary dormancy) for germination and also exhibit dormancy cycling. Thus, if seeds become buried in the soil they can form a persistent seedbank and become a serious volunteer weed in succeeding crops. The capacity of nondormant seeds of B. napus to be induced into secondary dormancy is contrary to results of studies on fresh nondormant seeds of some other species. A reanalysis of published and unpublished data shows that fresh seeds of this species have some degree of primary dormancy and that there is a significant relationship between primary dormancy and the capacity to enter secondary dormancy. However, most germination tests on B. napus have not been done in enough detail to detect primary dormancy (or not) in fresh seeds of this species. The usefulness of information on the relationship between primary dormancy and the capacity of the seeds to enter secondary dormancy is discussed in relation to management of weedy volunteers of this species.     

Note: A comparison of molecular diagnostic procedures for the detection of aster yellows phytoplasmas (16Sr-I) in leafhopper vectors

Different molecular procedures were compared for the detection of aster yellows phytoplasmas (AYP) in the leafhopper vectorsMacrosteles quadripunctulatus (Kirschbaum),Euscelidius variegatus (Kirschbaum) andEuscelis incisus (Kirschbaum). Polymerase chain reaction (PCR) with universal and group-specific primers designed on the 16S-rDNA sequence was most sensitive in nested assays. A dot-blot procedure with an oligoprobe designed on the 16S-rDNA was less sensitive and consistent to detect phytoplasmas in total insect DNA, but consistently detected amplicons from direct PCR. The dot-blot assay with a probe based on a phytoplasma plasmid sequence detected AYP in most vector specimens and did not react with DNAs from leafhoppers infected by flavescence dorée and psyllids infected by apple proliferation phytoplasmas. This last assay is almost devoid of contamination risks, faster and cheaper compared to PCR, therefore it has to be preferred for field-scale analysis of leafhopper populations. http://www.phytoparasitica.org posting Feb. 24, 2004.     

Competitiveness and yield impact of volunteer oilseed rape (Brassica napus) in winter and spring wheat (Triticum aestivum)

Journal of Plant Diseases and Protection - Volunteer oilseed rape is a relevant weed in many crop rotations due to seed persistence and dormancy. With the intro-duction of imidazolinone-tolerant...     

Biochemical defense mechanisms induced in winter oilseed rape seedlings with different susceptibility to infection with Leptosphaeria maculans

The activity of key biochemical defense mechanisms in seedlings of winter oilseed rape cultivars, differing in tolerance to infection with Leptosphaeria maculans, was investigated. The studied winter oilseed rape cultivars differed in their biochemical defense potential. In the resistant cultivar, a significant increase in the activity of chitinase and β-1,3-glucanase was observed that can be regarded as a symptom of a systemic defense reaction. In addition, the resistant cultivar had a more efficient antioxidant system, that is, higher activity of specific SOD isoforms and higher level of low-molecular antioxidants. Only the resistant cultivar had three Fe-SOD sub-isoforms. A correlation between the content of cell wall-bound phenolics and hydrogen peroxide in the resistant cultivar may indicate that an important method of H₂O₂ neutralization was its participation in the process of phenolics incorporation into the cell wall. Elevated content of cell wall-bound phenolics significantly enhances the cell wall integrity, which then becomes a more effective firewall against L. maculans. Moreover, high utilization of soluble sugars during synthesis of the phenolic compounds in the pathogenesis was demonstrated in the resistant cultivar. We conclude that the key factors contributing to a greater tolerance to L. maculans were an effective antioxidant system and higher activity of PR proteins, i.e., chitinase and β-1,3-glucanase.     

Winter oilseed rape with high levels of resistance to Pyrenopeziza brassicae derived from wild Brassica species

Oilseed rape cultivars possess inadequate levels of resistance to light leaf spot disease, caused by the ascomycete Pyrenopeziza brassicae Sutton & Rawlinson. High levels of resistance to this disease were found within wild accessions of Brassica oleracea and B. rapa . This resistance was introgressed into agronomically acceptable winter oilseed rape breeding lines. Seedling resistance was determined by two genes. One of these, derived from B. rapa and positioned on linkage group N1, resulted in no apparent symptoms following infection, while the other, derived from B. oleracea and positioned on N16, resulted in black necrotic flecks and a reduced amount of sporulation compared with standard cultivars. Several agronomically acceptable double haploid lines were developed which expressed very high levels of adult plant resistance.     

Occurrence and distribution of important weed species in German winter oilseed rape fields

Journal of Plant Diseases and Protection - Data on weed species currently found in winter oilseed rape, the extent of their occurrence and regional distinctions were collected in autumn 2005, 2006...