Genetic analysis of tropical quality protein maize (<Emphasis Type="Italic">Zea mays</Emphasis> L.) germplasm

Maize (Zea mays L.) is an important source of carbohydrates and protein in the diet in sub-Saharan Africa. The objectives of this study were to (i) estimate general (GCA) and specific combining abilities (SCA) of 13 new quality protein maize (QPM) lines in a diallel under stress and non-stress conditions, (ii) compare observed and predicted performance of QPM hybrids, (iii) characterize genetic diversity among the 13 QPM lines using single nucleotide polymorphism (SNP) markers and assess the relationship between genetic distance and hybrid performance, and (iv) assess diversity and population structure in 116 new QPM inbred lines as compared to eight older tropical QPM lines and 15 non-QPM lines. The GCA and SCA effects were significant for most traits under optimal conditions, indicating that both additive and non-additive genetic effects were important for inheritance of the traits. Additive genetic effects appeared to govern inheritance of most traits under optimal conditions and across environments. Non-additive genetic effects were more important for inheritance of grain yield but additive effects controlled most agronomic traits under drought stress conditions. Inbred lines CKL08056, CKL07292, and CKL07001 had desirable GCA effects for grain yield across drought stress and non-stress conditions. Prediction efficiency for grain yield was highest under optimal conditions. The classification of 139 inbred lines with 95 SNPs generated six clusters, four of which contained 10 or fewer lines, and 16 lines of mixed co-ancestry. There was good agreement between Neighbor Joining dendrogram and Structure classification. The QPM lines used in the diallel were nearly uniformly spread throughout the dendrogram. There was no relationship between genetic distance and grain yield in either the optimal or stressed environments in this study. The genetic diversity in mid-altitude maize germplasm is ample, and the addition of the QPM germplasm did not increase it measurably.     

Sequence characterized amplified region markers tightly linked to the dwarf mosaic resistance gene <Emphasis Type="Italic">mdm1 (t)</Emphasis> in maize (<Emphasis Type="Italic">Zea mays</Emphasis> L.)

Maize dwarf mosaic is one of the devastating and wide spread viral diseases in the world. The present investigation was carried out to develop DNA markers closely linked to the resistance gene mdm1 (t). Linkage between the markers and phenotypes was confirmed by analyzing an F₂ population obtained from a cross between a resistant parent ‘Huangzaosi’ and a susceptible parent ‘Mo17(478)’. Four AFLP markers were found in the maize dwarf mosaic resistant plants. By using (BSA) bulked segregant analysis, two of the four AFLP markers were transformed into Sequence-characterized amplified regions markers (SCARs), nominated Rsun-1 and Rsun-2. The two amplified fragment length polymorphism (AFLP) markers, RHC-1and RHC-2, from the amplification products of primer combination E-AGC/M-CAA and E-AGC/M-GAA, showed linkage with the mdm1 (t) gene in a genetic distance 1.6 and 2.0 cM, respectively. The results indicate that the new SCAR markers will be valuable to distinguish resistant plants from susceptible plants in plantlets growing in seedbeds. The markers developed in this study are suitable for marker-assisted selection for maize dwarf mosaic resistance.     

Combining ability,heterosis and genetic diversity in tropical maize (<Emphasis Type="Italic">Zea mays</Emphasis> L.) under stress and non-stress conditions

Drought and low soil fertility are considered the most important abiotic stresses limiting maize production in sub-Saharan Africa. Knowledge of the combining ability and diversity of inbred lines with tolerance to the two stresses and for those used as testers would be beneficial in setting breeding strategies for stress and nonstress environments. We used 15 tropical maize inbred lines to (i) evaluate the combining ability for grain yield (GY), (ii) assess the genetic diversity of this set of inbred lines using RFLP, SSR, and AFLP markers, (iii) estimate heterosis and assess the relationship between F₁ hybrid performance, genetic diversity and heterosis, and (iv) assess genotype × environment interaction of inbred lines and their hybrids. The F₁ diallel hybrids and parental inbreds were evaluated under drought stress, low N stress, and well-watered conditions at six locations in three countries. General combining ability (GCA) effects were highly significant (P < 0.01) for GY across stresses and well-watered environments. Inbred lines CML258, CML339, CML341, and CML343 had the best GCA effects for GY across environments. Additive genetic effects were more important for GY under drought stress and well-watered conditions but not under low N stress, suggesting different gene action in control of GY. Clustering based on genetic distance (GD) calculated using combined marker data grouped lines according to pedigree. Positive correlation was found between midparent heterosis (MPH) and specific combining ability (SCA), GD and GY. Hybrid breeding program targeting stress environments would benefit from the accumulation of favorable alleles for drought tolerance in both parental lines.     

Evaluation of waterlogging tolerance with the degree of foliar senescence at early vegetative stage of maize (<Emphasis Type="Italic">Zea mays</Emphasis> L.)

Maize is highly susceptible to waterlogging, which is becoming one of worldwide abiotic threats in many agricultural areas. This study was evaluated to establish the screening method and to find tolerant maize genotypes. Six Korean maize inbred lines were subjected to waterlogging at V3 for 15 days using a big size pot with single maize plant (big pot method) and a box containing 31 maize plants at a time (box method). The degree of foliar senescence and the number of senescent leaves were better indicators for selecting waterlogging tolerant maize genotypes than SPAD value and plant height. The degree of foliar senescence revealed that KS124, KS140, and KS141 are tolerant, and KS85 is susceptible to waterlogging at the early growth stage. These responses of foliar senescence were in clear accordance with those of plant grain yield, which was supported by stress tolerance index for grain yield. The box method also showed the similar response of foliar senescence to the big pot method. Therefore, this box method based on foliar senescence may be simple and efficient for large-scale screening of maize germplasm against waterlogging stress. It was concluded that foliar senescence can be a good indicator for selecting tolerant maize genotypes against waterlogging at the early growth stage.     

Diallel analysis of grain yield and resistance to seven diseases of 12 African maize (<Emphasis Type="Italic">Zea mays</Emphasis> L.) inbred lines

Maize (Zea mays L.) is grown on 15 million ha in eastern and southern Africa. Several diseases are of common occurrence in the region and regularly result in significant yield losses. A collaborative regional disease nursery (REGNUR) project was initiated in 1998 to identify and increase access to disease resistant germplasm, generate and disseminate information on disease and insect resistance sources, and facilitate the development of resistant cultivars by project partners. A diallel among 12 elite inbred lines was formed with the specific objective of evaluating the combining ability of these inbred lines for grain yield and resistance to seven diseases. The trial was grown at six sites in 2001. Results showed that both general (GCA) and specific combining ability effects were significant for most diseases. On the average, GCA accounted for 69% of resistance to diseases and only 37% of variation for grain yield. Correlations between GCA effects for disease scores were generally non-significant, implying that it is possible to pyramid genes for disease resistance in inbred lines. This underscores the need for screening for resistance to prevailing diseases using artificial inoculation or reliable hot-spots. Based on GCA effects for grain yield and across diseases, P12 and P6 were the best inbred lines. The crosses P4 × P9 (6.7 t ha⁻¹) and P4 × P12 (6.9 t ha⁻¹) were the best hybrids in the earlier maturity group, while P3 × P9 (8.3 t ha⁻¹) and P2 × P8 (7.4 t ha⁻¹) were the best hybrids in the late maturity group.     

Density effects on environmental variance and expected response to selection in maize (<Emphasis Type="Italic">Zea mays</Emphasis> L.)

The study aimed to address the optimal plant population density in maize that maximizes phenotypic expression and differentiation, and lessens environmental effects on genotypic expression in terms of the response to selection. A set of seven short-season hybrids (Rom set) was tested under rainfed conditions (2006, 2007) in Romania, and a set of seven long-season hybrids (Gr set) was tested with irrigation (2007) in Greece. Experimentation was conducted under ultra-low (ULD), low (LD), middle (MD), and high (HD) densities (0.74, 2.51, 4.20, 8.40 plants/m² for the Rom set, and 0.74, 3.13, 6.25, 8.33 plants/m² for the Gr set). Phenotypic expression and differentiation for grain yield were highest at the ULD. Coefficient of variation (CV) for grain yield, ear length and kernel row number decreased as density decreased. Environmental conditions and hybrid plant-yield potential (i.e., maximum yield per plant) were crucial for the optimal density that achieved the lowest environmental variance. For the Rom set the lowest CV for grain yield was obtained at the LD in the unfavourable season and at the ULD in the favourable season. The less acquired variance was achieved at the ULD for the highest yielding hybrids and at the LD for the lowest yielding hybrids, revealing a negative association between plant-yield potential and optimal density. Concluding, a density proximal to the ULD approximates absence of competition in maize, and optimizes three determinant parameters for successful selection: selection intensity, heritability and phenotypic differentiation.     

Identification of genetic factors affecting plant density response through QTL mapping of yield component traits in maize (<Emphasis Type="Italic">Zea mays</Emphasis> L.)

It is generally believed that grain yield per unit area of modern maize hybrids is related to their adaptability to high plant population density. In this study, the effects of two different plant densities (52,500 and 90,000 plants/hm²) on 12 traits associated with yield were evaluated using a set of 231 F_2:3 families derived from two elite inbred lines, Zheng58 and Chang7-2. Evaluation of the phenotypes expressed under the two plant density conditions showed that high plant density condition could decrease the value of 10 measured yield component traits, while the final grain yield per hectare and the rate of kernel production were increased. Twenty-seven quantitative trait loci (QTLs) for 10 traits were detected in both high and low plant density conditions; among them, some QTLs were shown to locate in five clusters. Thirty QTLs were only detected under high plant density. These results suggest that some of the yield component traits perhaps were controlled by a common set of genes, and that kernel number per row, ear length, row number per ear, cob diameter, cob weight, and ear diameter may be influenced by additional genetic mechanisms when grown under high plant density. The QTLs identified in this study provide useful information for marker-assisted selection of varieties targeting increased plant density.     

The impact of GM seed admixture on the non-GM harvest product in maize (<Emphasis Type="Italic">Zea mays</Emphasis> L.)

Recently, the introduction of GM maize in agricultural production in the EU and elsewhere has raised the issue of adventitious presence of GM seeds in conventional seed lots. Adventitious presence may occur in all arable farming, and at any step in the production of seeds or grain, or in processing of harvested product in the food/feed chain. As of today, there are no official thresholds governing the adventitious presence of GM seeds in conventional seed lots in Europe. However, it is assumed that GM admixture in seed lots could have a considerable influence on the level of adventitious presence in the non-GM harvested product. The experiments highlighted in this paper aim at the consequences of adventitious presence of GM maize seeds in conventional seed lots. It is shown for varieties belonging to the same maturity group that the final GM rate (% seeds) in the harvest product is nearly same as the initial seed admixture (% seeds). This corresponds to Hardy–Weinberg expectations. The variation depends mainly on the flowering coincidence, the site and climatic conditions. In cases where the admixed seeds are of different maturity group, the level of cross-pollination in the harvest product is reduced. Furthermore a comparison between the visual GM seed detection and real-time PCR detection was done. It is evident that the result of the real-time PCR detection method has a more variable uncertainty associated with its results than the visual seed testing method. The accuracy of prediction from % GM seed to % GM DNA depends on the reference material used for calibration curves.     

Diallel analysis of grain filling rate and grain filling period in tropical maize (<Emphasis Type="Italic">Zea mays</Emphasis> L.)

Grain yields of maize in the lowland tropics are generally limited by short days and high temperatures that minimize durations of incident light. Little has been published on the effects of this limiting environment on the genetics of grain filling rate (GFR), and grain filling period (GFP) in tropical maize germplasm. This study sought to address these limitations. A set of 8 elite maize inbreds of tropical origin and their 28 diallel hybrids were grown in three seasons at Waimanalo, Hawaii, USA. Seasonal differences included > 100% differences in values of photosynthetic active radiation (PAR) during grain formation. Information was sought on the performance variations and the genotype by season interactions for GFR, GFP, days to mid-silk (DTS), kernel weight, with estimates of general (GCA) and specific combining ability (SCA) and their interactions with seasons. Significant differences occurred for inbreds, hybrids, and genotype by season interactions, GCA and SCA effects and their interactions with seasons, which could be attributed primarily to the differences in PAR values among seasons in Hawaii during grain filling. Additive genetic effects predominated for GFR and GFP. Breeding approaches that take advantage of additive gene effects including hybrid breeding with evaluations in multiple Hawaii seasons may be used to alter GFR and GFP.     

The ND EarlyQPM program: developing the next generation of healthier maize (<Emphasis Type="Italic">Zea mays</Emphasis> L.) products

There is a need to develop the next generation of healthier crop products for an improved human and animal nutrition. Maize (Zea mays L.) cultivars with improved amino acid profiles are essential to diets focused on this crop. Breeders have added crop value with the development of quality protein maize (QPM). However, QPM cultivars have never been an option to farmer and ranchers in short-season environments. The objectives of this research were: (1) to adapt QPM genotypes to the northern U.S. through the North Dakota (ND) EarlyQPM Program, and (2) to develop new early generation SS and non-SS short-season QPM lines and populations for breeding purposes. Fifty-three inbred lines, including 47 QPM donor lines, five experimental North Dakota State University (NDSU) lines, and one ex-PVP line from industry, were selected to produce 94 early-QPM backcross populations. Considering earliness, protein content, and amino acid levels, 218 early generation lines were selected for producing testcrosses with industry testers. Experiments evaluating testcrosses were arranged in 10 × 10 and 12 × 12 partially balanced lattice designs across three ND locations in 2013 and 2014. A total of 48 lines were selected for further development, 17 representing the Stiff Stalk (SS) heterotic group and 31 representing the non-SS group. Selected lines showed, in hybrid combinations, not only above average grain yield, rate of dry down, and total protein content but also high levels of lysine, tryptophan, and methionine essential amino acids for feedstock nutrition. The results of this research show, for the first time, the successful adaptation of QPM genotypes to short-season environments. As a result, new ND EarlyQPM germplasms and lines have been developed for potential release.     

Development of RAPD and ISSR derived SCAR markers linked to <Emphasis Type="Italic">Xca1Bo</Emphasis> gene conferring resistance to black rot disease in cauliflower (<Emphasis Type="Italic">Brassica oleracea</Emphasis> var. <Emphasis Type="Italic">botrytis</Emphasis> L.)

Black rot caused by Xanthomonas campestris pv. campestris (Xcc) (Pam.) is the most devastating disease of cauliflower (Brassica oleracea var. botrytis L.; 2n = 2x = 18), taking a heavy toll of the crop. In this study, a random amplified polymorphic DNA (RAPD) and inter simple sequence repeat (ISSR) derived sequence characterized amplified region (SCAR) markers linked to the black rot resistance locus Xca1bo were developed and evaluated as a screening tool for resistance. The RAPD marker OPO-04₈₃₃ and ISSR marker ISSR-11₆₃₅ were identified as closely linked at 1.6 cM distance to the black rot resistance locus Xca1bo. Both the markers OPO-04₈₃₃ and ISSR-11₆₃₅ were cloned, sequenced and converted into SCAR markers and validated in 17 cauliflower breeding lines having different genetic backgrounds. These SCAR markers (ScOPO-04₈₃₃ and ScPKPS-11₆₃₅) amplified common locus and showed 100% accuracy in differentiating resistant and susceptible plants of cauliflower breeding lines. The SCAR markers ScOPO-04₈₃₃ and ScPKPS-11₆₃₅ are the first genetic markers found to be linked to the black rot resistance locus Xca1bo in cauliflower. These markers will be very useful in black rot resistance marker assisted breeding.     

Mapping of new resistance (<Emphasis Type="Italic">Vr2</Emphasis>, <Emphasis Type="Italic">Rm1</Emphasis>) and ornamental (<Emphasis Type="Italic">Di2</Emphasis>, <Emphasis Type="Italic">pl</Emphasis>) Mendelian trait loci in peach

Peach powdery mildew is one of the major diseases of the peach. Various sources of resistance to PPM have thus been identified, including the single dominant locus Vr2 carried by the peach rootstock ‘Pamirskij 5’. To map Vr2, a linkage map based on microsatellite markers was constructed from the F₂ progeny (WP²) derived from the cross ‘Weeping Flower Peach’ × ‘Pamirskij 5’. Self-pollinations of the parents were also performed. Under greenhouse conditions, all progenies were scored after artificial inoculations in two classes of reactions to PPM (resistant/susceptible). In addition to Vr2, WP² segregated for three other traits from ‘Weeping Flower Peach’: Rm1 for green peach aphid resistance, Di2 for double-flower and pl for weeping-growth habit. With their genomic locations unknown or underdocumented, all were phenotyped as Mendelian characters and mapped: Vr2 mapped at the top of LG8, at 3.3 cM, close to the CPSCT018 marker; Rm1 mapped at the bottom of LG1, at a position of 116.5 cM, cosegregating with the UDAp-467 marker and in the same region as Rm2 from ‘Rubira’^®; Di2 mapped at 28.8 cM on LG6, close to the MA027a marker; and pl mapped at 44.1 cM on LG3 between the MA039a and SSRLG3_16m46 markers. Furthermore, this study revealed, for the first time, a pseudo-linkage between two traits of the peach: Vr2 and the Gr locus, which controls the red/green color of foliage. The present work therefore constitutes a significant preliminary step for implementing marker-assisted selection for the four major traits targeted in this study.     

Morphological,cytological and reproductive characterization of tri-species hybrids (GOS) between <Emphasis Type="Italic">Pennisetum glaucum</Emphasis>, <Emphasis Type="Italic">P. orientale</Emphasis> and <Emphasis Type="Italic">P. squamulatum</Emphasis>

New tri-species hybrids (GOS) in the genus Pennisetum involving the cultivated species pearl millet (P. glaucum L.) and two wild species, viz. P. squamulatum Fresen and P. orientale L. C. Rich, are reported. Six hybrid plants were recovered after crossing a backcross hybrid (2n = 3x = 23, GGO) between P. glaucum (2n = 2x = 14, GG) and P. orientale (2n = 2x = 18, OO) with F₁s (2n = 6x = 42, GGSSSS) between P. glaucum (2n = 4x = 28, GGGG) and P. squamulatum (2n = 8x = 56, SSSSSSSS). The hybrids were perennial, morphologically intermediate to their parents, and represented characters from the three contributing species. The hybrids contained 2n = 44 chromosomes (GGGSSO) representing 21, 14 and nine chromosomes from P. glaucum, P. squamulatum and P. orientale, respectively. Meiotic and flow-cytometric analysis suggested origin of these hybrids from unreduced female and reduced male gametes. Average chromosome configuration (8.42_I + 14.32_II + 1.62_III + 0.52_IV) at Meiosis showed limited inter-genomic pairing indicating absence of significant homology between the three genomes. The hybrids were male sterile (except one) and highly aposporous. P. orientale was identified to induce apospory in hybrid background with P. glaucum at diploid and above levels, though it was quantitatively affected by genomic doses from sexual parent. A case of inducible and recurrent apospory is presented whereby a transition from Polygonum-type sexual embryo-sacs to Panicum-type aposporous embryo-sacs was observed in diploid interspecific hybrids. Results supported independent origin and partitioning of the three apomixis-components (apomeiosis, parthenogenesis, and functional endosperm development), reported for the first time in Pennisetum. Potential utilization of GOS hybrids in understanding genome interactions involved in complex traits, such as perenniality and apomixis, is discussed.     

<Emphasis Type="Italic">Agrobacterium</Emphasis> mediated transformation of indica rice (<Emphasis Type="Italic">Oryza sativa</Emphasis> L.) for insect resistance

The rice leaffolder (RLF), Cnaphalocrocis medinalis is an important pest of rice that causes severe damage in many areas of the world. The plants were transformed with fully modified (plant codon optimized) synthetic Cry1C coding sequences as well as with the hpt and gus genes, coding for hygromycin phosphotransferase and β-glucuronidase, respectively. Cry1C sequences placed under the control of doubled 35S promoter plus the AMV leader sequence, and hpt and gus genes driven by cauliflower mosaic virus 35S promoter, were used in this study. Embryogenic calli after cocultivation with Agrobacterium were selected on the medium containing hygromycin B. A total of 67 hygromycin-resistant plants were regenerated. PCR and Southern blot analyses of primary transformants revealed the stable integration of Cry1C coding sequences into the rice genome with predominant single copy integration. R₁ progeny plants disclosed a monogenic pattern (3:1) of transgene segregation as confirmed by molecular analyses. These transgenic lines were highly resistant to rice leaffolder (RLF), Cnaphalocrocis medinalis as revealed by insect bioassay.     

Breeding potential of inbred lines derived from five maize (<Emphasis Type="Italic">Zea mays</Emphasis> L.) populations

This review on the resistance to wheat blast disease focus on the latest knowledge useful for the breeders, but also takes into account the lacks in these knowledge. To tackle this disease, it is relevant to apply a breeding strategy which has previously proven its efficacy for obtaining rice varieties with a high level of partial and durable resistance to blast. But, incomplete information is available on wheat blast resistance. Therefore, firstly, it is necessary to adjust this breeding strategy considering the worst hypothesis corresponding to every lack of knowledge. Next, the possible invalidation of every hypothesis can allow simplifying the breeding schema and its implementation. For every lack of knowledge, the practical consequences of the corresponding worst hypothesis, the study of its validity and the consequences of its possible invalidation are explained. Scientific arguments, materials and methods details are provided with the latest available references.     

Residual macronutrient concentration and follower maize (<Emphasis Type="Italic">Zea mays</Emphasis>) crop performance in soilless growth medium previously cropped with six <Emphasis Type="Italic">Musa</Emphasis> genotypes

The nutrient mining abilities of six Musa genotypes: ‘Agbagba’, ‘PITA 22’, ‘Nsukka Local’, ‘FHIA 17’, ‘Fougamou’, and ‘BITA 7’, grown in organic medium formulated by decomposing rice husks with poultry manure in volume proportions of 3:2, were determined at the Teaching and Research Farm of the Department of Crop Science, University of Nigeria, Nsukka, Nigeria. Results indicated significant variation in nutrient mining with respect to Musa genotype and duration of growth. The medium previously cropped with ‘Agbagba’ recorded highest residual mean values for P and Ca, while the medium cropped with ‘Fougamou’ had the highest residual concentration of Mg and S. Residual amount of K was highest in the medium where ‘PITA 22’ and ‘Nsukka Local’ were previously grown. Peak residual concentration of P and K occurred in the medium in which Musa plants were grown only for 4 months, decreasing thereafter, in contrast to Ca, Mg, and S. Residual N tended to increase with longer growth duration of the Musa crops. Follower crop of maize grown in the medium previously cropped with Musa genotypes showed variable performance. While medium previously cropped with ‘PITA 22’ and ‘BITA 7’ favored growth attributes and leaf greenness of the follower maize plant, ‘Fougamou’ favored maize fresh weight attributes. Ectomycorrhiza association was observed in medium previously cropped to ‘BITA 7’ and ‘PITA 22’. Generally, ‘Agbagba’ and ‘Fougamou’ seemed to be the most reticent nutrient miners while uptake of P and K appeared to be low 4 months after planting (MAP) in contrast to Ca, Mg, and S uptake. However, substrate previously cropped with ‘PITA 22’, ‘BITA 7’ and ‘Fougamou’ gave rise to superior growth and fresh weight attributes, respectively, of the maize, the follower crop. A prospect of utilizing the ectomycorrhiza association observed with some genotypes to upgrade Musa yields and those of associated or follower crops exist.     

Genetic control of agronomic traits in alfalfa (<Emphasis Type="Italic">M. sativa</Emphasis> ssp. <Emphasis Type="Italic">sativa</Emphasis> L.)

The objective of this study was to develop diallel population hybrids by crossing selected germplasm and to determine the gene effects and genetic control of yield and yield components using diallel analysis. A complete diallel including reciprocals was made during 2003 and 2004 between five alfalfa cultivars of different geographic origin. For each pairwise cross, five plants were chosen at random from each of the two cultivars (~100 florets per plant) to obtain the F₁ generation. A spaced plant field was established in 2006 which included the five alfalfa cultivars (parents) and their 20 diallel hybrids (F₁). The results of the diallel analysis suggest that the genetic control of major agronomic traits is determined by both additive gene action (accumulation of frequency of desirable alleles represented by significant GCA effects) and nonadditive gene action (complementary gene interactions represented by significant SCA effects). This type of gene action expression in alfalfa also determines the way in which breeding is carried out and brings about changes in the methods used and has given rise to the idea of the semi-hybrid breeding of this crop. The concept involves: breeding alfalfas within the population, identification of heterotic germplasm, and the production of seed of the population hybrid (PH).     

Identification of the <Emphasis Type="Italic">S</Emphasis> locus core sequences determining self-incompatibility and <Emphasis Type="Italic">S</Emphasis> multigene family from draft genome sequences of radish (<Emphasis Type="Italic">Raphanus sativus</Emphasis> L.)

The S core and its flanking sequences were identified from two independent draft genome sequences of radish (Raphanus sativus L.). After gap-filling with PCR, the S core regions and full-length S receptor kinase (SRK) genes from two radish genomes were obtained. Phylogenetic analysis of the SRK genes clearly showed that one S core region belonged to the class I S haplotypes, but the other was included in the class II S haplotypes. Three sequences showing homology with known transposable elements were identified in the core regions, and one intact copia-type long terminal repeat (LTR)-retrotransposon containing a 4125-bp open reading frame (ORF) was identified in the class I S haplotype. A total of 61 genes showing homology with the SRK genes were identified from two draft genome sequences. Among them, the RsKD1 showed the highest homology with the SRK genes. There was 90% nucleotide sequence identity between the RsKD1 and RsSRK1 genes in the kinase domains. The phylogenetic tree of SRK genes and 13 most closely related homologs showed that all homologs were more closely related to the class II SRK genes than to the class I SRKs. Physical mapping of radish SRK-homologous genes and their B. rapa orthologs showed that two radish homologs and their B. rapa orthologs were tightly linked to the SRK genes in radish and B. rapa genomes. Sequence information about multiple SRK-homologs identified in this study would be helpful for designing reliable primer pairs for faithful PCR amplification of the SRK alleles, leading to improvement of the S haplotyping system in radish breeding programs.