引自美国的大豆资源抗疫霉根腐病基因分析

大豆疫霉根腐病是影响中国大豆生产的主要病害之一, 利用抗病品种是防治该病最经济有效的方法。本研究通过下胚轴创伤接种鉴定了13个大豆疫霉菌株在从美国引进的85个大豆品种(系)上的反应,结果表明, 72个品种(系)抗1个到12个大豆疫霉菌株。通过与14个含有单个已知抗疫霉根腐病基因的大豆品种(系)的反应型比较并结合系谱分析,明确35个品种(系)分别含有Rps1a、Rps1c、Rps1k、Rps2、Rps3c、Rps4、Rps5、Rps6和Rps7抗病基因或基因组合,其中有14个品种(系)含有Rps1a,1个含有Rps1c和2个含有Rps1k,这3个基因能够有效抵御我国大豆疫霉种群,可以直接用于抗病育种。     

河南大豆新品系抗大豆疫霉根腐病基因鉴定

大豆疫霉根腐病作为影响大豆生产的毁灭性病害之一,对大豆生产威胁很大。种植抗疫霉根腐病的大豆品种是控制该病害最有效的途径。河南省位于我国黄淮夏大豆产区的腹地,具有大豆疫霉根腐病发生的潜在威胁。本研究的目的是对河南省新育成的大豆品系进行抗性鉴定和抗病基因分子标记检测,以明确大豆新品系对大豆疫霉根腐病的抗性水平和抗病基因。采用下胚轴创伤接种法对64个河南省培育的大豆新品系进行接种,鉴定其对2个具有不同毒力的大豆疫霉分离物PsJS2和Ps41-1的抗性。结果显示,对分离物Ps41-1和PsJS2抗病的分别有35个和16个品系,对Ps41-1和PsJS2为中间反应型的分别有16个和10个品系,其中对2个分离物均抗病的有16个品系,占鉴定品系的25%。使用抗疫霉病基因RpsZheng共分离标记WZInDel11进行新品系的基因型鉴定发现,对2个大豆疫霉分离物均抗病的16个品系中有13个含有标记WZInDel11,对1个或2个大豆疫霉分离物表现为中间反应型的5个大豆品系,分子检测结果表明,其为杂合基因型,这些品系中的纯合抗病单株可直接选育成纯合抗病品系用于抗病育种。综合系谱分析结果推测,有2个品系可能含抗疫霉根腐病基因RpsZheng,2个品系可能含RpsYD29,14个品系可能含有RpsZheng或其等位基因。表明河南省培育的大豆新品系中含有优异的大豆疫霉根腐病抗源,该研究结果将为病害防控和抗病品种的选育提供参考。     

一个抗大豆疫霉根腐病新基因的分子鉴定

利用微卫星标记技术在大豆品种诱变30中鉴定和定位了一个抗大豆疫霉根腐病基因RpsYB30。该基因位于大豆分子遗传图谱L连锁群微卫星标记Satt497和Satt313之间,与这两个标记的遗传距离分别为4.4 cM 和3.3 cM。RpsYB30是大豆分子遗传图谱L连锁群鉴定的第1个抗疫霉根腐病基因,为新基因。     

Rps8基因定位于大豆分子连锁群F上的抗性基因富集区

由大豆疫霉菌引起的大豆根腐病和茎腐病是大豆上的严重病害。单个显性抗性基因（Rps）以基因对基因的形式通过超敏反应调控植株对大豆疫霉菌的抗性。因其控制疫霉菌的有效性和易于被育种人员利用而受到青睐。现已报道的抗大豆疫霉病的位点有7个（Rps1至Rps7），位于大豆的4个分子连锁群上。     

黑龙江东部大豆疫霉生理小种及毒性结构时空动态分析

为了研究大豆疫霉生理小种和致病型随时间和空间而变化的规律,连续4 a从黑龙江省东部地区发病较严重的4个代表性地块采集土壤样品,采用叶碟诱捕法分离出其中的大豆疫霉,将确认为大豆疫霉的菌株利用下胚轴伤口接种法鉴定其生理小种和致病型,对于科学使用大豆品种具有重要意义。结果表明,497株大豆疫霉属于135种致病型,包含29个生理小种,1株IRT和105个新致病型,其中16,18,22,28,35号生理小种为中国首次报道,而4,33,38,39,43,48,49号生理小种未分离到。13号小种分离频率最高,为3.2%,1号小种分离频率仅为2.4%。结果显示,黑龙江东部大豆疫霉群体致病力偏弱,对8个Rps基因致病频率为27.8%～53.1%,其中对Rps1k、Rps3a、Rps1c和Rps6基因的致病频率低于35%,对Rps7基因的致病频率为53.1%,说明在黑龙江东部种植含有Rps1k、Rps3a、Rps1c和Rps6基因的大豆品种较安全,种植含Rps7基因的大豆品种较危险。随时间推移黑龙江东部大豆疫霉生理小种和致病型分化迅速,致病型变得复杂多样,对绝大多数Rps基因致病频率增加,单株毒性和群体致病力均增强;生理小种和新致病型在试验田与生产田间数量差异不大,但种类差别较大,试验田单株毒性和群体致病力更强。     

黄淮海地区大豆主栽品种对8个大豆疫霉菌株的抗性评价

随着麦茬免耕栽培技术的推广应用,黄淮海地区麦后夏播大豆生产中疫霉根腐病呈加重趋势。了解该地区大豆主栽品种对疫霉根腐病的抗性和筛选抗病亲本,对培育新的高产广适抗病品种具有重要意义。本研究利用8个具有不同毒力的大豆疫霉菌株,采用下胚轴创伤接种法,对20世纪50年代以来黄淮海地区审定、推广的140个大豆主栽品种进行接种鉴定。表明除6个品种对8个菌株均无抗性外,其余134个品种分别抗1~8个大豆疫霉菌株,占鉴定品种总数的95.7%,其中抗6~8个以上菌株的品种有83个,占鉴定品种总数的59.3%。以14个鉴别寄主的抗病反应型为参照,发现134个品种对8个大豆疫霉菌株共产生65种反应型,其中19个品种产生的5种反应型与已知单基因或2个单基因组合反应型相同;115个品种产生的60种反应型与含有已知单基因或2个单基因组合的反应型不同,推测可能含有新的抗病基因或基因组合。根据研究结果合理选择亲本,可培育出聚合多个抗性基因且综合性状优良的大豆新品种。     

与大豆SMV3号株系抗性相关的分子标记的鉴定

对大豆花叶病毒SMV抗性的遗传研究一直是大豆抗病遗传研究的热点之一。本研究以哈91R3-301×黑农41组合构建了遗传群体,其F2分离单株的SSR标记基因型基本符合1:2:1的比例,说明这个群体没有偏分离。根据F3株系的病情指数分布推测SMV3的F2成株抗性似乎由多基因控制。根据SSR分子标记的基因型和F2:3株系对SMV3抗病性表型结果连锁分析,推测Satt296是与大豆花叶病毒(SMV)3号株系抗性主基因连锁的分子标记,应用Joinmap作图软件将该标记定位在D1b连锁群上,这一结果与部分文献报道的研究结果一致。本研究获得的与抗性基因连锁的分子标记在其他的RIL群体中的验证得到了初步证实,推测定位在D1b连锁群上的抗性座位可能是控制SMV3的主基因之一,该标记可望应用于大豆抗SMV3的分子标记辅助选择。     

大豆品种RGA分析与疫霉根腐病抗性鉴定

采用7个具有不同毒性基因的大豆疫霉菌株, 对黄淮地区48个优良大豆种质资源进行了苗期接种鉴定, 筛选出一批具有不同抗性的优异抗源, 说明黄淮地区蕴藏着丰富的大豆抗病资源。以相似系数0.682聚类, 48个大豆品种可以分成8类。同时, 根据抗病基因在保守区域序列同源性的原理, 利用RGA-PCR方法对48个品种的遗传多样性进行分析, 从48个大豆品种的抗病基因同源序列中共扩增出53条谱带, 各品种之间谱带较清晰且呈现明显的多态性, 以相似系数0.746聚类, 48个大豆品种可以分成7类。尽管抗性表型和RGA聚类的类与类之间没有一一对应关系, 但抗谱广的品种, 能较好地聚在一类, 如丰收黄、科丰36、即墨油豆等。因此, 综合利用抗性表型和RGA分析可以为大豆疫霉根腐病抗性基因鉴定、品种的培育和合理布局提供一定的理论依据。     

大豆对大豆花叶病毒株系SC6和SC17抗病基因的精细定位

针对我国北方和长江流域大豆产区广泛分布的SMV株系SC6和SC17,利用2个抗病大豆品种Q0926和中豆35分别与感病品种南农1138-2和南农菜豆5号配制2个抗感杂交组合Q0926×南农1138-2和中豆35×南农菜豆5号以及一个抗抗组合Q0926×中豆35,研究3个组合的F₁、F₂、F_2:3抗性遗传规律,探讨Q0926对SC6和中豆35对SC17及2个抗病品种对同一SMV株系抗性基因的等位关系,并对大豆对2个株系的抗病基因进行了标记定位。结果显示,Q0926×南农1138-2和中豆35×南农菜豆5号2个抗感杂交组合在分别接种SC6和SC17后,F₁表现抗病,F₂呈3抗∶1感分离比例,F_2:3家系呈1抗∶2分离∶1感病的分离比率,表明Q0926对SC6和中豆35对SC17的抗病性分别由1对显性基因控制;抗抗组合Q0926×中豆35的F₁和F₂在接种2个株系后均未发现感病单株,表明Q0926与中豆35对SC6和SC17株系的抗病基因分别是等位或紧密连锁的。分别利用2个抗感组合的F₂和F_2:3群体对2个抗病基因的定位结果显示,第2染色体上的25个SSR标记与抗SC6的基因R_SC6连锁,最近的2个标记与抗性基因R_SC6的排列次序和遗传距离为BARCSOYSSR_02_0617(0.775 cM)-R_SC6-BARCSOYSSR_02_0621(0.519 cM);第2染色体上的38个SSR标记与抗SC17的基因R_SC17连锁。最近的2个标记与抗性基因R_SC17的排列次序和遗传距离为BARCSOYSSR_02_0622(0.264 cM)-R_SC17-BARCSOYSSR_02_0627(0.262 cM),其对应的物理区间分别为52 kb和60 kb。抗性遗传研究为抗大豆花叶病毒育种的亲本选配、后代选择提供了理论指导,抗性基因的标记定位研究为抗性基因的分子标记辅助选择和抗病基因的图位克隆奠定了基础。     

大豆抗胞囊线虫4号生理小种新品系SSR标记分析

培育抗病品种是大豆胞囊线虫(Soybean Cyst Nematode, SCN)病经济、有效的防治方法。利用130个SSR标记对26份抗SCN 4号生理小种(SCN 4)新品系和15份感病品系进行基因型分析, 旨在明确抗病品系与SCN 4抗性相关联的SSR标记, 提出抗性基因分子标记鉴定方法, 以提高抗病品系在育种中的利用效率。研究表明, Hartwig与晋品系亲本具有不同的SCN 4抗病基因, 其遗传相似系数为0.362。与抗性显著关联的22个SSR位点分布在11个连锁群(LG), 推测LG D1b上分布的SSR标记附近存在1个新的SCN 4抗病基因; 而Satt684、Sat_230、Sat_222、Satt615和Satt231位点, 来自亲本Hartwig等位基因与抗病相关联, 而来自晋品系的等位基因与感病相关联, 在Sat_400、Satt329和Satt557等其他17个SSR位点, 来自Hartwig等位基因与感病相关联, 来自晋品系亲本的等位基因与抗病相关联。利用非连锁不平衡SSR标记Satt684和Sat_400可对供试品系进行有效的抗性辅助选择。     

大豆种粒斑驳抗性的遗传分析及基因定位

运用SSR标记技术及分离群体组群分析法(BSA法), 对大豆品系3C624×东农8143的F₂、F₃代群体接种SMV1号株系鉴定种粒斑驳抗性, 并进行抗种粒斑驳基因的分子定位。结果表明, 东农8143对SMV1号株系的种粒斑驳抗性受1对显性基因控制。用Mapmaker/Exp 3.0b进行连锁分析, 抗种粒斑驳基因位于大豆染色体组的F连锁群上, 并获得了与抗种粒斑驳基因紧密连锁的5个SSR标记Sat_297、Sat_229、Sat_317、Satt335和Sct_188, 标记与抗病基因间的排列顺序和连锁距离为Sat_297–12.4 cM–Sat_229–3.6 cM–SRSMV1–1.7 cM–Sat_317–2.4 cM– Satt335–13.8 cM–Sct_188。其中近距离标记Sat_229(3.6 cM)、Sat_317(1.7 cM)和Satt335(4.1 cM)可用于标记辅助选择育种和抗源筛选。     

Identification of SSR markers linked to the Phytophthora resistance gene Rps1-d in soybean

To identify markers for the Phytophthora resistance gene, Rps1‐d, 123 F_{2 : 3} families were produced from a cross between Glycine max (L.) Merr. ‘Tanbakuro’ (a Japanese traditional black soybean) and PI103091 (Rps1‐d) as an experimental population. The results of virulence tests produced 33 homozygous resistant, 61 segregating and 29 homozygous susceptible F_{2 : 3} families. The chi‐squared test gave a goodness‐of‐fit for the expected ratio of 1 : 2 : 1 for resistant, segregating and susceptible traits, suggesting that the inheritance of Rps1‐d is controlled by a monogenic dominant gene. Simple sequence repeat (SSR) analyses of this trait were carried out using the cultivars ‘Tanbakuro’ and PI103091. Sixteen SSR primers, which produced 19 polymorphic fragments between the two parents, were identified from 41 SSR primers in MLG N. Eight SSR markers were related to Rps1‐d, based on 32 of the 123 F_{2 : 3} families, consisting of 16 homozygous resistant and 16 homozygous susceptible lines. The remaining 91 families were analysed for these eight markers, and a linkage map was constructed using all 123 F_{2 : 3} families. The length of this linkage group is 44.0 cM. The closest markers, Sat_186 and Satt152, are mapped at 5.7 cM and 11.5 cM, respectively, on either side of the Rps1‐d gene. Three‐way contingency table analysis indicates that dual‐marker‐assisted selection using these two flanking markers would be efficient.     

Identification of QTL underlying soluble pigment content in soybean stems related to resistance to soybean white mold (<Emphasis Type="Italic">Sclerotinia sclerotiorum</Emphasis>)

The frequency of soybean white mold (Sclerotinia sclerotiorum, SWM) outbreaks has increased since 1978, and this disease is currently considered to be the second most important cause of soybean yield loss worldwide. We have studied SWM in stems of soybean cultivar Maple Arrow, which shows partial resistance to SWM, in an attempt to identify the quantitative trait loci (QTLs) underlying soluble pigment(s) content, which is associated with SWM resistance. A SWM-susceptible cultivar, Hefeng 25, was crossed with Maple Arrow, and 149 F_5:6 recombinant inbred lines were subsequently advanced through single-seed-descent. A total of 109 simple sequence repeat (SSR) markers were used to construct a genetic linkage map. Three QTLs for soluble pigment content in soybean stems associated with the resistance to SWM, namely, Qsp-1 (Satt502-Sat_159), Qsp-2 (Sat_156-Satt251), and Qsp-3 (Satt525-Satt233), were identified in 2007 and 2008 and located onto linkage groups D1a+q, B1 and A2, respectively. The phenotypic variation (R ²) explained by these QTLs ranged from 6.29 to 15.37%. These three QTLs were not significantly related to known QTLs associated with escape resistant mechanisms. The use of these QTLs in marker-assisted selection may contribute to improved soybean resistance to SWM.     

A quantitative trait locus influencing tolerance to Phytophthora root rot in the soybean cultivar ‘Conrad’

‘Conrad’, a soybean cultivar tolerant to Phytophthora root rot (PRR), and ‘OX760-6-1’, a breeding line with low tolerance to PRR, were crossed. F₂ derived recombinant inbred lines were advanced to F₆ to generate a population through single-seed descent. This population was used to identify quantitative trait loci (QTLs) influencing PRR tolerance in ‘Conrad’. A total of 99 simple sequence repeat (SSR), or microsatellite, markers that were polymorphic and clearly segregated in the F₆ mapping population were used for QTL detection. Based on the data of PRR in the field at two planting locations, Woodslee and Weaver, for the years 2000 and 2001, one putative QTL, designated as Qsatt414-596, was detected using MapMaker/QTL. Qsatt414-596 was flanked by two SSR markers from the linkage group MLG J, Satt414 and Satt596. Satt414 and Satt596 were also detected to be significantly (P < 0.005) associated with PRR using the SAS GLM procedure and were estimated to explain 13.7% and 21.5% of the total phenotypic variance, respectively.     

Molecular tagging of Asiatic soybean rust resistance in exotic genotype EC 241780 reveals complementation of two genes

Asian soybean rust (ASR) caused by Phakopsora pachyrhizi severely reduces seed yield in soybean. Molecular tagging of ASR resistance can help in the process of resistance breeding. In this study, an F₂ population of cross (susceptible cultivar ‘NRC 7’ × resistant exotic genotype EC 241780) was used for bulked segregant analysis (BSA) with 25 SSR (simple sequence repeat) primers linked with six Rpp genes. Among them, five polymorphic SSR markers, viz., Sct 187, SSR 1859, Satt 191 (Rpp1b like loci) and Satt 215, Sat_361 (Rpp2 loci) distinguished the ASR resistant and susceptible bulks and individuals. In combined marker analysis, the markers Satt 191 (Rpp1b like loci) and Satt 215 (Rpp2 loci) were linked with ASR severity score and were also confirmed in individual 110 F₂ segregants. Hence, these markers could be utilized in the marker assisted rust resistance breeding of Rpp1b like and Rpp2 genes. In silico candidate gene analysis for hypersensitive response revealed that Satt 191 linked region was rich in genes encoding apoptotic ATPase having leucine‐rich repeat (LRR) domain.     

Fine mapping of the major Soybean dwarf virus resistance gene Rsdv1 of the soybean cultivar ‘Wilis’

Soybean dwarf virus (SbDV), a Luteoviridae family member, causes dwarfing, yellowing and sterility of soybean (Glycine max), leading to one of the most serious problems in soybean production in northern Japan. Previous studies revealed that the Indonesian soybean cultivar ‘Wilis’ is resistant to SbDV and that the resistance can be introduced into Japanese cultivars. A major QTL for SbDV resistance has been reported between SSR markers Sat_217 and Satt211 on chromosome 5. In this study, we named this QTL Rsdv1 (resistance to SbDV) and developed near-isogenic lines incorporating Rsdv1 (Rsdv1-NILs) using Sat_217 and Satt211 markers. The Rsdv1-NILs were resistant to SbDV in greenhouse inoculation and field tests, indicating that Rsdv1 alone is sufficient for the resistance phenotype. We fine-mapped Rsdv1 within the 44-kb region between Sat_11 and Sct_13. None of the six genes predicted in this region was closely related to known virus resistance genes in plants. Thus, Rsdv1 may confer resistance by a previously unknown mechanism. We suggest that Rsdv1 may be a useful source for the Japanese soybean breeding program to introduce SbDV resistance.     

大豆质核互作雄性不育系NJCMS3A双亲雄性育性基因的SSR标记

利用大豆质核互作雄性不育系NJMCS3A的质、核供体亲本N21566和N21249构建F₂和BC₁F₁育性分离群体进行雄性育性的遗传分析与基因定位。结果表明, F₁正反交可育,F₂和BC₁F₁的可育株与不育株分离比例经χ²测验分别符合3∶1和1∶1,表明NJCMS3A供体亲本雄性育性由一对基因控制,可育等位基因为显性。该基因可能是NJCMS3A的一个恢复基因。选用793对SSR引物对F₂和BC₁F₁群体分别进行育性基因定位,发现该育性基因位于O连锁群上,在Satt331和Satt477标记之间,与Satt331、CSSR133和Satt477标记距离的次序一致,分别为8.1~10.4 cM、11.4~16.4 cM、13.3~19.2 cM。     

Molecular mapping of two recessive genes controlling resistance to bacterial leaf pustule disease in soybean (Glycine max)

Bacterial leaf pustule (BLP) caused by Xanthomonas axonopodis pv. glycines (Xag) is a serious soybean disease. A BLP resistant genotype ‘TS-3’ was crossed with a BLP susceptible genotype ‘PK472’, and a segregating F₂ mapping population was developed for genetic analysis and mapping. The F₂ population segregation pattern in 15:1 susceptible/resistance ratio against Xag inoculum indicated that the resistance to BLP in ‘TS-3’ was governed by two recessive genes. A total of 12 SSR markers, five SSR markers located on chromosome 2 and seven SSR markers located on chromosome 6 were identified as linked to BLP resistance. One of the resistance loci (r1) was mapped with flanking SSR markers Sat_183 and BARCSOYSSR_02_1613 at a distance of 0.9 and 2.1 cM, respectively. Similarly, SSR markers BARCSOYSSR_06_0024 and BARCSOYSSR_06_0013 flanked the second locus (r2) at distances of 1.5 and 2.1 cM, respectively. The identified two recessive genes imparting resistance to BLP disease and the SSR markers tightly linked to these loci would serve as important genetic and molecular resources to develop BLP resistant genotypes in soybean.