Some impacts of low and medium head weirs on downstream fish movement in the Murray–Darling Basin in southeastern Australia

Abstract –  This article reports on the findings of a study undertaken within the Murray-Darling River Basin in southeastern Australia, which investigated the impact of weirs on downstream fish movement. Downstream fish movement was monitored at Kennedy's Weir (an overshot, 2 m high weir) on the Broken Creek and Torrumbarry Weir (an undershot, 6.5 m high weir) on the Murray River. A trap used to sample Kennedy's Weir indicated that fish travelled downstream over this weir without sustaining injury or death. A follow-up study, whereby fish were captured below the two respective weirs and translocated upstream where they were radio tagged and released, indicated that while a few fish travelled downstream past the weirs on their return movements back to their home range areas, most were reluctant to do so. This study demonstrates that low-level weirs may inhibit downstream fish movement, and enhancement of downstream fish passage for potamodromous fish species warrants further investigation.     

Illumination influences the ability of migrating juvenile salmonids to pass a submerged experimental weir

Abstract –  The downstream migration of juvenile salmonids has previously been considered predominantly passive. It has been argued that passive displacement during periods of darkness is, partially at least, a result of an inability to maintain a fixed position in the absence of visual cues. In this study, behaviour of juvenile Pacific salmonids was assessed under conditions of light and dark as they passed through an artificial channel and encountered a submerged weir. Results indicated that when light, fish formed schools and actively explored the channel. Conversely, when dark (infrared illumination only) they did not form schools, but maintained randomly distributed positions holding station against the flow. As a consequence, more fish approached and either passed, or rejected, the weir when light. The majority of fish that passed the weir did so within the first minute of each trial. Fish predominantly passed through the channel facing downstream and changed orientation prior to passing tail first over the weir crest in the presence and absence of visual cues. The orientation switch was less common when dark. This study shows, at a fine-resolution scale, that downstream movement of juvenile salmonids can be inhibited as fish exhibit alternative behaviours in the absence of visual cues. Downstream movement was not predominantly passive. Fish passage design should not be based on the assumption that downstream migration is passive.     

Evaluation of Juvenile salmon passage and survival through a fish weir and other routes at Foster Dam,Oregon, USA

Downstream passage for juvenile Chinook salmon Oncorhynchus tshawytscha (Walbaum) and steelhead Oncorhynchus mykiss (Walbaum) through the fish weir at Foster Dam, Oregon, was evaluated to assess the weir's efficacy as a long-term passage solution. Radio telemetry was used to estimate survival, passage and effectiveness for the fish weir, spillway and turbines. Survival of Chinook salmon through the fish weir varied by season and reservoir elevation (66%–87%), and passage proportions were low (8%–20%). Fish weir effectiveness was low to moderate (0.39–2.09). Steelhead survival was lower (57%–77%) but passed the fish weir in higher proportions (77%), and weir effectiveness was consistently high (2.96–5.49). The results indicate the existing fish weir will not be a suitable long-term passage solution for all species. However, because of the high passage proportions and effectiveness observed for steelhead, further development of the surface-flow concept appears to be promising for safely passing downstream-migrating fishes.     

Migratory delay leads to reduced passage success of Atlantic salmon smolts at a hydroelectric dam

Passage of fish through hydropower dams is associated with mortality, delay, increased energy expenditure and migratory failure for migrating fish and the need for remedial measures for both upstream and downstream migration is widely recognised. A functional fish passage must ensure safe and timely passage routes that a substantial portion of migrating fish will use. Passage solutions must address not only the number or percentage of fish that successfully pass a barrier, but also the time it takes to pass. Here, we used radiotelemetry to study the functionality of a fish bypass for downstream‐migrating wild‐caught and hatchery‐released Atlantic salmon smolts. We used time‐to‐event analysis to model the influence of fish characteristics and environmental variables on the rates of a series of events associated with dam passage. Among the modelled events were approach rate to the bypass entry zone, retention rates in both the forebay and the entry zone and passage rates. Despite repeated attempts, only 65% of the tagged fish present in the forebay passed the dam. Fish passed via the bypass (33%), via spill (18%) and via turbines (15%). Discharge was positively related to approach, passage and retention rates. We did not detect any differences between wild and hatchery fish. Even though individual fish visited the forebay and the entry zone on multiple occasions, most fish passed during the first exposures to these zones. This study underscores the importance of timeliness to passage success and the usefulness of time‐to‐event analysis for understanding factors governing passage performance.     

Fish pass effectiveness for bullhead (Cottus gobio), perch (Perca fluviatilis) and roach (Rutilus rutilus) in a regulated lowland river

Abstract –  The effectiveness of a pool-and-weir fish pass in the regulated river Laarse Beek (Belgium) was assessed for bullhead ( Cottus gobio ), perch ( Perca fluviatilis ) and roach ( Rutilus rutilus ) from August 2002 to April 2003. Fish were caught by electrofishing downstream, within and upstream of the fish pass. They were marked with visible implant elastomer tags and released downstream of the fish pass. Our results suggest that the fish pass is ineffective for the bullhead because none of the 1270 tagged bullheads were recaptured in the upstream study area. Passage failure most likely resulted from excessive water velocities in the fish pass. On the contrary, 8% of the tagged perch and 29% of the tagged roach were recaptured in the upstream study area. Several management strategies are proposed to allow free upstream passage of the endangered bullhead at the fish pass under study.     

Emigration and mortality of juvenile brown trout in a New Zealand headwater tributary

We investigated juvenile brown trout migration and mortality in a headwater tributary of the Motueka River, New Zealand, by tracking 1000 young‐of‐the‐year passive integrated transponder (PIT) tagged fish over autumn to summer to (i) partition total loss into emigration and mortality and (ii) determine the influence of season and flow on emigration. Fish were tracked using mobile and fixed PIT tag readers. Of the 1000 fish tagged, 173 remained within the Rainy River; emigration contributed 60% and mortality 29% to loss. Only 11% of fish tagged in autumn were predicted to remain in the upper reaches of the stream by early summer, and this agreed with density data collected in a parallel study. We identified a two‐phase downstream migration pattern with early movement of large young‐of‐the‐year fish in autumn (mainly during floods). This was followed by another substantial period of movement in spring (during floods and lower flows) by fish that were initially smaller at the time of PIT tagging. The management implications for damming and fish screening in headwater tributaries are discussed.     

Remediation of upstream passage for migrating Galaxias (Family: Galaxiidae) through a pipe culvert

Movement through streams is critical for the maintenance of diadromous fish populations. Numerous fish passage improvement techniques exist, and knowledge of their effectiveness is required to conserve target species. An existing 70‐m pipe culvert was considered a barrier to the passage success of young‐of‐year (YOY) Galaxias spp. as a result of high water velocity (0.9 m/s). Water velocity in the pipe culvert was reduced by installing a concrete weir downstream of the culvert. A lateral ridge rock‐ramp fishway was installed to provide for the passage of fish over the weir, and baffles were installed in the upstream portion of the culvert to provide refuge from higher water velocity at this location. A BACI design was used to determine whether passage success, measured using a mark–recapture technique, improved as a result of the remediation works. The probability of successful passage of YOY Galaxias spp. through the culvert increased from 0.03 to 0.41 following remediation works and was similar to levels observed at a control site (0.33). The success of the fishway and baffles at this culvert provides an important case study for managers to adopt this technique to improve fish passage on a broader scale and range of other sites.     

High variability in spawning migration of sea trout,Salmo trutta,in two northern Swedish rivers

Abstract Telemetry was used to examine spawning migration of sea trout, Salmo trutta L. (n = 126), in two rivers in northern Sweden. The spawning areas defined by radio‐tagged fish differed between the river systems. In the River Vindelälven, sea trout spawned in the main stem and 80% of tagged individuals returned to areas where hatchery‐reared juveniles had been previously stocked. In the River Piteälven, 74% of tagged sea trout ascended tributaries for spawning. Tagged fish were categorised into three groups of migratory pattern. cart (classification and regression tree) analysis indicated that distance from tagging location to spawning site (S_dist) explained the migratory patterns. Large S_dist separated fish with stepwise upstream migration from those with up‐ and downstream migrations and one‐directional direct migration. Fish tagged early in the season migrated the longest distance to spawning areas. Stocking locations and sex explained the large search behaviour up‐ and downstream in the rivers. The findings are important for the sustainable management of sea trout in the Gulf of Bothnia.     

Efficiency of a dual density studded fish pass designed to mitigate for impeded upstream passage of juvenile European eels (Anguilla anguilla) at a model Crump weir

This study demonstrated that juvenile (glass) eels used a specific substrate (eel tiles) to circumvent a model Crump weir under an experimental setting. Upstream passage efficiency was 0 and 67% for the unmodified (no studded eel tiles on the downstream face; control) and modified (with studded eel tiles on the downstream face; treatment) set‐ups, respectively, and was greater for a small (59%) compared to large (41%) stud configuration. Eels were active and motivated to ascend the weir during both control and treatment set‐ups. Approach and attempt rates were elevated during the first few minutes of the treatment compared to control trials. Eels were edge‐oriented under both set‐ups and ascended the weir through the tiles during single burst swimming events (reaching estimated speeds of 68.5 cm·s⁻¹). Eel tiles may provide a cost‐effective solution for mitigating impacts of anthropogenic barriers to juvenile eel migration. Further research is required to determine passage efficiencies under higher flows, for a greater size range of eel, and for other migratory anguilliform fish (e.g. lamprey, Lampretra spp. and Petromyzon marinus L.). The performance of eel tiles should be validated through robust field studies.     

Survival of migrating sea trout (Salmo trutta) and Atlantic salmon (Salmo salar) smolts negotiating weirs in small Danish rivers

Abstract – The survival of brown trout and Atlantic salmon smolts during passage over small weirs was estimated in two small Danish rivers during the spring of 1998. Parallel groups of smolts were released upstream and downstream of the weirs and recaptured in traps further downstream. The results showed a smolt loss varying from 18 to 71% for trout and 53% for salmon. Furthermore, the surviving smolts from the upstream groups were delayed for up to 9 days compared to downstream groups. The study demonstrated that an increased proportion of total river discharge allocated to fish passage increased the smolt survival. Losses may be because of fish penetrating grids erected at fish farm inlets, predation and delays, which may lead to desmoltification. The low survival may seriously threat both the long-term viability of wild populations of anadromous salmonids and the outcome of the intensive stocking programme in Denmark.     

A quantitative assessment of fish passage efficiency

In an attempt to restore the connectivity of fragmented river habitats, a variety of passage facilities have been installed at river barriers. Despite the cost of building these structures, there has been no quantitative evaluation of their overall success at restoring fish passage. We reviewed articles from 1960 to 2011, extracted data from 65 papers on fish passage efficiency, size and species of fish, and fishway characteristics to determine the best predictors of fishway efficiency. Because data were scarce for fishes other than salmonids (order Salmoniformes), we combined data for all non‐salmonids for our analysis. On average, downstream passage efficiency was 68.5%, slightly higher than upstream passage efficiency of 41.7%, and neither differed across the geographical regions of study. Salmonids were more successful than non‐salmonids in passing upstream (61.7 vs. 21.1%) and downstream (74.6 vs. 39.6%) through fish passage facilities. Passage efficiency differed significantly between types of fishways; pool and weir, pool and slot and natural fishways had the highest efficiencies, whereas Denil and fish locks/elevators had the lowest. Upstream passage efficiency decreased significantly with fishway slope, but increased with fishway length, and water velocity. An information‐theoretic analysis indicated that the best predictors of fish passage efficiency were order of fish (i.e. salmonids > non‐salmonids), type of fishway and length of fishway. Overall, the low efficiency of passage facilities indicated that most need to be improved to sufficiently mitigate habitat fragmentation for the complete fish community across a range of environmental conditions.     

Movements by adult cutthroat trout in a lotic system: implications for watershed-scale management

Abstract  Movements by adult cutthroat trout, Oncorhynchus clarkii (Richardson), were assessed from autumn to summer in the Salt River watershed, Wyoming-Idaho, USA by radio telemetry. Adult cutthroat trout were captured during September and October 2005 in the main stem of the Salt River, surgically implanted with radio transmitters, and tracked through to August 2006. Adult cutthroat trout were relatively sedentary and resided primarily in pools from October to March, but their movement rates increased during April. Higher movement rates were observed among tagged fish during May and early June. Among 43 fish residing in the Salt River during April 2006, 44% remained in the river, 37% moved into mountain tributaries and 19% moved into spring streams during the spawning season. Fish did not use segments of mountain tributaries or the upstream Salt River where fish passage was blocked by anthropogenic barriers or the channel was dewatered during summer. Almost all the fish that moved into spring streams used spring streams where pools and gravel–cobble riffles had been constructed by landowners. The results suggest that adult Snake River cutthroat move widely during May and early June to use spawning habitat in mountain tributaries and improved spring streams. Maintaining the ability of adult fish to move into mountain streams with spawning habitat, preserving spawning habitat in accessible mountain tributaries and removing barriers to upstream movements, and re-establishing summer stream flows in mountain tributaries affected by dams appear to be habitat management alternatives to preserve the Snake River cutthroat trout fishery in the Salt River.     

Gauging weirs impede the upstream migration of adult river lamprey Lampetra fluviatilis

Abstract The ability of individual and groups of 30 migrating adult river lamprey Lampetra fluviatilis L. to pass a Crump or flat‐v gauging weir under two discharge regimes (moderate and low) was assessed in an experimental channel. Despite repeated attempts by the lamprey, the Crump weir remained impassable during all trials. Lamprey passage over the flat‐v weir occurred only during group trials at low discharge (5.73 ± 0.19 L s^?1) and only as a single burst swimming event via the deeper water passing over the centre of the weir. Lampreys generally approached the weirs along the channel walls and particularly favoured the true right wall associated with elevated velocities during low discharge and reverse currents at moderate discharge (68.06 ± 2.41 L s^?1). Time spent immediately below the weir was lower than expected compared with further downstream. Rate of weir approach, attempts to pass (absolute number and as a proportion of the total approaches) and time spent immediately downstream of the weir were highest for the Crump weir at low discharge and the flat‐v weir at moderate discharge. The present study suggests that gauging weirs may severely impede the movements of migrating adult river lamprey under low to moderate discharges.     

Swimming height of Atlantic salmon, Salmo salar L., crossing a Crump weir

Abstract. A closed-circuit television system was used to determine the height in the water column at which salmon swam when ascending and descending over a Crump weir. The swimming depth distribution of fish ascending the weir was very skewed with 88.1% of the fish seen swimming within 10cm of the weir surface while the descending fish seen were scattered throughout the available water column. The distribution of water velocities over the downstream face of the weir showed that the velocity was lowest near the weir surface and highest at the water-air interface except at the weir crest where high velocity water was found at the weir surface, often causing fish to rise as they crossed the crest. This has important implications in choosing the position of electrode arrays in open-channel counters as the upstream electrode must not be too close to the weir crest or fish may be missed as a result of being too far from the electrode to produce a large enough signal.     

Variation in growth and aggression of juvenile brown trout (Salmo trutta) from upstream and downstream reaches of the same river

Abstract –  To investigate differences in behaviour and growth between juvenile brown trout from spatially separated reaches, fish were collected from above and below a weir in Silverstream, New Zealand. Population level differences in mass-specific growth rates and aggression level were examined in tank experiments. Monitoring of mass-specific growth rates found that relative growth rates between fish of different sizes varied between fish from the upstream reach but not between fish from the downstream reach. Large individuals grew faster than smaller individuals from the upstream reach but no effect of relative fish size on growth was found among fish from the downstream population, indicating that social organisation in the two populations differed. When tested in pairs, juvenile brown trout from the downstream population were found to be more aggressive than those from the upstream population. Differences in the allometric relationship between growth rate and fish size and in the levels of aggressiveness appear to be related to the failure to form dominance hierarchies among fish from the downstream reach, a fixed behavioural trait most likely related to prior experience of crowding or different genetic backgrounds.     

Evaluation of a portable electrode array for a resistivity fish counter

Abstract This study aimed to develop and test an electrode array for a resistivity fish counter that could be easily installed in a small river without a weir. An electrode array consisting of three steel cables laid in parallel across the stream channel and connected to a microprocessor-based counter was tested in an Atlantic salmon, Salmo salar L., spawning tributary. The accuracy of the counter was assessed by observing fish movements with closed-circuit television. Most salmon moving upstream were registered correctly (90% overall). Detection of downstream movement was less reliable (60% overall), as a consequence of downstream swimming behaviour. The accuracy of the downstream count was improved by tensioning the cable electrodes, but remained lower than that of the upstream count. Since salmon swam repeatedly up- and downstream, this discrepancy resulted in an overestimate of the net upstream count. The accuracy of the downstream count needs to be improved before a bed-mounted electrode array could be used for routine salmon counting.     

Relationships between water temperatures and upstream migration, cold water refuge use, and spawning of adult bull trout from the Lostine River, Oregon, USA

Howell PJ, Dunham JB, Sankovich PM. Relationships between water temperatures and upstream migration, cold water refuge use, and spawning of adult bull trout from the Lostine River, Oregon, USA.
Ecology of Freshwater Fish 2010: 19: 96–106. This article is a US Government work and is in the public domain in the USA Abstract – Understanding thermal habitat use by migratory fish has been limited by difficulties in matching fish locations with water temperatures. To describe spatial and temporal patterns of thermal habitat use by migratory adult bull trout, Salvelinus confluentus, that spawn in the Lostine River, Oregon, we employed a combination of archival temperature tags, radio tags, and thermographs. We also compared temperatures of the tagged fish to ambient water temperatures to determine if the fish were using thermal refuges. The timing and temperatures at which fish moved upstream from overwintering areas to spawning locations varied considerably among individuals. The annual maximum 7‐day average daily maximum (7DADM) temperatures of tagged fish were 16–18 °C and potentially as high as 21 °C. Maximum 7DADM ambient water temperatures within the range of tagged fish during summer were 18–25 °C. However, there was no evidence of the tagged fish using localized cold water refuges. Tagged fish appeared to spawn at 7DADM temperatures of 7–14 °C. Maximum 7DADM temperatures of tagged fish and ambient temperatures at the onset of the spawning period in late August were 11–18 °C. Water temperatures in most of the upper Lostine River used for spawning and rearing appear to be largely natural since there has been little development, whereas downstream reaches used by migratory bull trout are heavily diverted for irrigation. Although the population effects of these temperatures are unknown, summer temperatures and the higher temperatures observed for spawning fish appear to be at or above the upper range of suitability reported for the species.     

Cumulative impacts of habitat fragmentation and the environmental factors affecting upstream migration in the threatened sea lamprey,Petromyzon marinus

1. River ecosystems are often fragmented by artificial structures, such as weirs. For anadromous species, these structures can impede access to upstream spawning sites and ultimately lead to severe population declines.
2. This study focused on the freshwater spawning migration of the sea lamprey, Petromyzon marinus, an anadromous species threatened by habitat fragmentation across its native range. To quantify the cumulative impacts of multiple weirs on upstream-migrating adults, and to explore the environmental factors affecting migratory movements, passive acoustic telemetry was applied to 56 individuals during their spawning migration in the heavily fragmented River Severn basin, UK.
3. While 89% of tagged sea lamprey passed the first weir upstream of the release site on the main river, only 4% passed the fifth weir. For 85% of migrants, the upstream extent of migration was immediately downstream of a weir. Individuals that passed weirs upstream of the release site (n = 50) took 21.6 ± 2.8 days to reach their most upstream location, experiencing cumulative passage times at weirs of 15.7 ± 2.8 days; these delays constituted a median of 84% of total upstream movement times.
4. Multistate models showed that the weir passage rates of sea lamprey in tidal and non-tidal areas increased significantly when downstream river level and discharge were elevated. Upstream-to-downstream changes in direction were frequent downstream of weirs, but rare in unobstructed river sections.
5. The results provided evidence for a cumulative effect of multiple weirs on sea lamprey movements, substantially delaying upstream migrants and limiting their spawning to atypical habitat. The results also demonstrated the crucial roles of high tides and elevated discharge events in enabling weir passage. Although the Severn Estuary features conservation designations for sea lamprey, this study reveals that barriers are inhibiting their upstream migration, a problem that should be addressed to assist sea lamprey conservation.

     

Evaluation of a flat-plate PIT tag interrogation system at Bonneville Dam

In the spring of 1996 and 1997, a prototype 400 kHz flat-plate (pass-by) passive integrated transponder tag interrogation (PIT tag) system was installed at the terminus of the downstream migrant (DSM) channel of the Bonneville Dam First Powerhouse, located on the Columbia River. The system was designed to interrogate previously PIT tagged juvenile salmonids migrating down the Columbia River without interfering with the traditional subsampling of fish passing through the facility. In addition, the design enables fish of virtually any size, and debris, to pass over the system's antennas without the port restrictions imposed by traditional pass-through PIT tag interrogation systems. We describe the fish facility in addition to the flat-plate system and its operation. The system tag reading efficiency was evaluated during 1996 and 1997 using a direct method based on the release of known numbers of tagged test fish and an indirect statistical procedure based on tagged run-at-large fish. The results showed that PIT tag reading efficiency during both years using the direct method averaged 97%, while that using the statistical procedure averaged 99% for the dual multiplexed antenna array. During the 1996 and 1997 field seasons 4371 and 14 733 fish, respectively, were recorded. Daily system functionality was monitored using stick tests (i.e., the passing of PIT tagged sticks across the antenna array).     

Brook trout (Salvelinus fontinalis) movement and survival after removal of two dams on the West Branch of the Wolf River,Wisconsin

Dam removals allow fish to access habitats that may provide ecological benefits and risks, but the extent of fish movements through former dam sites has not been thoroughly evaluated for many species. We installed stationary PIT antennas in 2016 and 2017 to evaluate movements and survival of brook trout Salvelinus fontinalis in the West Branch of the Wolf River (WBWR) in central Wisconsin following removal of two dams and channel modifications designed to promote fish movement. These changes provided access to lacustrine habitats that might provide suitable winter habitat or act as ecological sinks. We used multistate models to estimate transition probabilities between river sections, to determine whether brook trout: (a) moved between multiple river sections and (b) entered lacustrine habitats as seasonal refuges, but eventually returned to lotic habitat. We also used a Cormack-Jolly-Seber model to evaluate whether apparent survival of brook trout in the WBWR was comparable to other populations. Few fish moved among river sections or used lacustrine habitat (<5% of tagged fish); most brook trout remained in sections where they were initially tagged, potentially due to quality habitat located throughout the river. Like other studies, brook trout in the WBWR appear to experience high mortality based on low number of detections, few physical recaptures and an estimated eight-month apparent survival rate of 0.27. In scenarios where fish can already access suitable habitat, removal of dams may not result in substantial increases in fish movement and colonisation of newly accessible habitat may not occur immediately.