共查询到20条相似文献,搜索用时 31 毫秒
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Yoshimi Yonemoto Abul Kashem Chowdhury Hidenori Kato Mustad Malid Macha Hitoshi Okuda 《Scientia Horticulturae》2007
Floral morphology, random amplified polymorphic DNA (RAPD), and amplified fragment length polymorphism (AFLP) were used to characterize and verify genetic diversity within a white sapote cultivar collection and to develop molecular markers for germplasm identification. On the basis of floral morphology, the cultivars were classified into three types: type I included 23 cultivars with large ovaries and small anthers; type II included 13 cultivars with small ovaries and large anthers; and type III included one cultivar, named ‘Maltby’, with a large ovary and large anthers. DNA was isolated from 39 cultivars of white sapote and subjected to RAPD and AFLP analysis using 24 and 7 primers, respectively. One hundred and sixty-eight RAPD and 286 AFLP bands were used to assess genetic characterization among white sapote. Sixty percent of the RAPD and 77% of the AFLP amplification products were polymorphic among accessions. RAPD or AFLP markers differentiated all white sapote cultivars effectively. Moreover, each flower type was characterized as specially associated with two RAPD bands. UPGMA dendrograms based on RAPD and AFLP data, showed the majority of the cultivars from flower type I and flower type II clustering together. Finally 101 RAPD markers and 220 AFLP markers were used to construct a neighbor-joining dendrogram. This showed that the 37 cultivars could be classified into six distinct clusters, between which the similarity coefficient was as low as 0.00–0.55, even though the cultivars were morphologically very similar. The remaining two cultivars namely ‘Smathers’ and ‘Maltby’ were found genetically very distant from the other cultivars in RAPD, AFLP or combined RAPD and AFLP based dendrograms. The results suggested that the level of genetic variation among white sapote cultivars is diverse and the morphological and molecular data may lead to representation of the cultivar relationships as well as flower type discrimination. 相似文献
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S. Pereira-Lorenzo A.M. Ramos-Cabrer A.J. González-Díaz M.B. Díaz-Hernández 《Scientia Horticulturae》2008
Apple cultivars from Canary Islands can possibly be valuable genetic resources for subtropical areas. We localised 31 accessions considered by growers to be local, and confirmed by historical references that apple crop was introduced in XV century. These accessions were compared with 77 Spanish and 26 commercial cultivars in order to detect synonyms. A set of 10 SSRs were studied, and 2 of them presented 2 loci. Cultivars from La Palma (Canary Islands) presented five specific alleles not found in other Spanish regions. Those polymorphisms allowed detecting one introgressant in La Palma from non-native cultivars, and the other 30 accessions were classified into 14 genotypes. Some accessions derived from non-native cultivars such as Golden Delicious. A main cultivar could be detected, Del País, with 14 accessions. Secondary ones were Camuesa and Pero. Genetic differentiation was small between regions (Fst = 0.057) but significant, confirmed by analysis of molecular variance (AMOVA). Major genetic differentiation was found between non-native cultivars and cultivars from Asturias and Basque Country. Bayesian method and admixture analysis reconstructed three ancestral groups (RPP), Asturian and Basque cultivars grouped in RPPI (mainly those used for cider production), a mixture of cultivars from Galicia and La Palma in RPPII and non-native cultivars were in RPPIII. This genetic differentiation was also confirmed by factorial correspondence analyses (FCA). AMOVA over RPPs increased the genetic differentiation. Allelic variation found in this study showed that Spanish local cultivars represent a differentiated genetic pool that will provide original genotypes to diversify the reduced number of cultivars used in commercial production. In addition, differentiated genotypes localised in La Palma will be preserved in the local Germplasm Bank. 相似文献
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SRAP在葱栽培品种遗传多样性研究中的适用性分析 总被引:23,自引:2,他引:21
为评价SRAP技术对葱品种进行鉴定和遗传关系分析的适用性, 对20个葱栽培品种的表型特征进行了观察记载, 利用256个SRAP引物组合对其进行了遗传多样性研究。结果表明: (1) 256个SRAP引物组合中有161个引物组合产生多态性条带, 占所用引物组合数的62.9%。161个引物组合共产生336条多态性条带, 不同引物组合产生的多态性条带数为1~6个, 平均2.1个。20个葱栽培品种遗传相似系数变幅为0.464~0.938, 平均0.703。(2) 依据SRAP进行聚类分析的分类结果与依据表型特征分类的结果一致。上述结果说明SRAP标记可以在葱栽培品种的鉴定和遗传多样性研究中应用。 相似文献
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A. Omrani-Sabbaghi M. Shahriari M. Falahati-Anbaran S.A. Mohammadi A. Nankali M. Mardi B. Ghareyazie 《Scientia Horticulturae》2007
To study the genetic variation in Iranian olive collections and some foreign olive cultivars, 47 accessions of 18 local cultivars from 6 olive collections of Iran (Roudbar, Zanjan, Ahvaz, Dezful, Kazeroon and Shiraz), were analyzed along with 30 imported cultivars using 16 microsatellite primer pairs. All the used microsatellite loci revealed polymorphism in the studied genotypes, except GAPU14 and GAPU113 markers. Fourteen microsatellite primers amplified 126 polymorphic alleles in the 87 selected olive accessions. The average number of alleles per locus was 9, ranging from 3 to 14. Polymorphic information content (PIC) was 0.85. The genetic similarity based on Jaccard coefficient ranged from 0.15 to 1. The genetic relationships among accessions were investigated using cluster analysis and principal component analysis (PCA). Most of the accessions with the same name were grouped together; some exceptions were also observed. As expected, close relationship was observed among accessions within same cultivar. Most of the Iranian olive accessions were clustered to a main distinct group. Two-dimensional scatter plot of principal component analysis revealed a clear separation of most of the Iranian olives from Syrian and other introduced cultivars. These suggest that Iranian cultivars have different origin related to West Mediterranean basin cultivars and have evolved independently from the others. Between and within Iranian and foreign cultivars (cultivars including three or more accessions) genetic diversity was analyzed using analysis of molecular variance (AMOVA). AMOVA revealed higher within cultivar genetic variation (62.76%) as compare to that between cultivar variations (37.24%). The intra- and inter-cultivar variance tested by permutation test showed significant genetic variation at both levels. The high level within cultivar genetic variance could be due to mislabeling and presence of homonyms in cultivars produced by vegetative propagation from original plants. 相似文献
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The genetic diversity of 15 carob (Ceratonia siliqua L.) cultivars located in an experimental field from Algarve (Portugal) was evaluated over 7 years using 12 fruit and seed phenotypic characters, in order to characterize carob cultivars. The values of morphological traits obtained by cultivar were compared with those from other countries of the Mediterranean basin. Statistically significant differences were found between cultivars for all characters which were examined, what indicates a high genetic diversity. The relationship among these characters was analyzed by principal component analysis (PCA) resulting in the separation of these cultivars classed in four groups (clusters I–IV) and in four ungrouped cultivars. A three dimension of the model was found to be significant and explained 74.5% of the total variation, in which the first component accounting for 34.6% of the total variation is dominated by fruit characters, while the second component is dominated by seed characters. Cultivars plotted on the left-lower quadrant on the space determined by principal components 1 and 2 are characterized by fruits with high seed yield more appropriated for industrial rentability. The correlation analyses established by cultivar provided a specific understanding about the way how fruit and seed characteristics correlate within each cultivar. This approach can be useful for the development of a breeding programme, aiming to increase the seed yield, seed thickness, individual and total seed weight by fruit, characteristics that are determinant to improve the industrial exploitation of carob. 相似文献
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In the mid-1970s, a new apple variety named ‘Meran’ was discovered in South Tyrol (northern Italy), which harbours the largest continuous apple growing area in Europe. The cultivar was registered for varietal protection and patented in several countries, and was declared to be a cross of the varieties ‘Golden Delicious’ and ‘Morgenduft’ (synonym ‘Rome Beauty’). The parentage of ‘Meran’ has, however, been questioned, and the present study aimed to assess the descent of this cultivar by the combined use of molecular genetic and bioinformatic tools. Five accessions of ‘Meran’ were collected from three different European germplasm collections and analysed at 14 variable microsatellite DNA loci. Subsequently, computer software was used to allocate the most likely parent pair from a set of cultivars representative for the apple growing area of South Tyrol in 1975. The molecular genetic data clearly excluded ‘Morgenduft’ as a gene donor to ‘Meran’ and provided strong evidence that ‘Meran’ is a cross of the cultivars ‘Golden Delicious’ and ‘Jonathan’, confirming previous assumptions based on morphological traits of the tree and fruit. 相似文献
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Gladiolus is one of the important commercial flowers with a large number of cultivars. However, genetic relationships among its genotypes have not been reported. This study analyzed genetic relatedness of 54 gladiolus cultivars using amplified fragment length polymorphism (AFLP) markers. A total of 24 AFLP primer pairs with three samples were initially screened, from which 9 primer sets that showed clear scorable and highly polymorphic bands were selected for AFLP reactions. Fluorescence-labeled amplification products were subjected to electrophoresis and then analyzed using an automated sequencer. A dendrogram was constructed by the unweighted pair group method using the arithmetic average (UPGMA). The number of AFLP fragments generated per primer set ranged from 10 to 151 with fragment sizes varying from 50 to 450 bp. A total of 660 AFLP fragments were detected, of which 658 (99.70%) were polymorphic. All the primers except E-AGG/M-CTA displayed 100% polymorphism. All cultivars were clearly differentiated by their AFLP profiles. The AFLP data were compared with previously obtained RAPD data and combined to generate a common dendrogram. The first cluster was dominated with indigenously bred cultivars while the second was dominated with exotic cultivars. This shows that most of the exotic cultivars as well as indigenous cultivars are closely related with each other. However, two indigenous cultivars viz., Pusa Suhagin and Pusa Archana share genetic similarity with exotic cultivars. Among the genotypes selected for the investigation, Pusa Gunjan was identified as the most distinct genotype. The AFLP markers developed will help future Gladiolus cultivar identification, germplasm conservation and new cultivar development. The assessed genetic relationships among gladiolus cultivars may enhance the efficiency of breeding program by selecting desirable parents with reduced breeding cycle. 相似文献
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Bermudagrass (Cynodon ssp.) germplasm is genetically diverse and widely distributed in the world. The study was conducted to identify and assess the molecular variation and relationship among 24 cultivars developed in China, Australia and the USA. Sequence-Related Amplified Polymorphism (SRAP) was applied to cultivars identification in this study for the first time. Thirty of the 90 SRAP primer combinations generated a total of 274 clearly bands encompassing 249 (91%) polymorphic. Each bermudagrass cultivar has its unique binary code and can be distinguished from the others. Three distinct clusters were obtained by unweighted pair-group method with arithmetic averages based on the polymorphic markers. Coefficients of genetic distance among the genotypes ranged from 0.57 to 0.97. The results demonstrated that SRAP marker is a stable molecular marker technique for the identification of bermudagrass cultivars and their genetic relationships. 相似文献
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Qing-Hua Dong Xue Cao Guang Yang Hua-Ping Yu Kibet Korir Nicholas Chen Wang Jing-Gui Fang 《Scientia Horticulturae》2010
Single nucleotide polymorphisms (SNPs) are among the current generation of molecular markers. SNPs occur at high frequencies in both plant and animal genomes and can provide broader genome coverage and reliable estimates of genetic relevance. In this study, 144 sequences, amplified by 9 pairs of primers from 16 cultivars of Vitis vinifera, were cloned. The sequence alignment of the 9 group sequences derived from 16 sample cultivars yielded 154 SNPs in a combined length of 3443 bp genomic sequences. SNPs were discovered with an average frequency of one SNP per 23 bp. The distribution of the SNPs comprised of 70% transitions, 20% transversions, 8% InDels and 2% others. A phylogenetic tree constructed from these data showed that all the 16 cultivars were separated well and grouped differently in the entire dendrogram derived from the SNP data, therefore confirming that single nucleotide polymorphisms could be an efficient and powerful method for grapevine cultivar identification and genetic diversity analysis in grapevine. 相似文献
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M. Mardi S. M. Mousavi-Derazmahalleh A. A. Zeinanloo P. Majidian S. H. Kolahi-Zonoozi 《The Journal of Horticultural Science and Biotechnology》2016,91(4):404-411
Iran is considered to have a unique gene pool of different fruit and nut species including olive (Olea europaea L.). In this study, we used 22 previously developed microsatellite (simple sequence repeat; SSR) markers for olive to evaluate the level of genetic variation and to produce identification keys for 63 Iranian accessions of olive belonging to 17 groups of cultivars. Based on morphological features, the number of flowers per inflorescence, fruit weights, endocarp weights, oil percentages, and flesh weights per endocarp had the highest coefficient of variation values, indicating the large extent of morphological variability among the 63 Iranian olive cultivars studied. All 22 microsatellite (SSR) markers revealed a high level of polymorphism, with a mean polymorphic information content (PIC) value of 0.511. Analyses of genetic structure among the 63 olive accessions were carried out using model-based methods, which showed a tendency for geographical clustering. Ten SSRs out of the 22 were successful for the identification of unique ID keys for 52 of the 63 accessions. In most cases, there was disagreement between the molecular data and the morphological data. These results could be used to reconstruct and maintain a collection of olive for future breeding programmes. 相似文献
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H. A. Persson K. Rumpunen L. K. Möllerstedt 《The Journal of Horticultural Science and Biotechnology》2013,88(6):684-689
SummaryTwelve morphological traits and 47 RAPD (Random Amplified Polymorphic DNA) markers were used to discriminate twelve culinary rhubarb (Rheum spp.) cultivars and to estimate their genetic relatedness. Considerable variability was found among the cultivars analysed. Based on the two types of traits, cluster analyses and multidimensional scaling analyses were performed, resulting in a partly overlapping pattern of relatedness among cultivars. A Mantel correspondence test showed a moderate correlation (r = 0.41) between morphology and molecular markers. Since the development of culinary rhubarb cultivars is not well documented, there is no proper pedigree information for most of the cultivars. However, when comparing our results on morphology and RAPDs with pedigree information for four cultivars, a combination of the two types of data sets appeared to give fairly good information about relatedness among cultivars. 相似文献
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Li-Wang Liu Li-Ping Zhao Yi-Qin Gong Ming-Xia Wang Li-Ming Chen Jin-Lan Yang Yan Wang Fan-Min Yu Long-Zhi Wang 《Scientia Horticulturae》2008
Three molecular marker systems, RAPD (random amplified polymorphic DNA), ISSR (inter-simple sequence repeat) and SRAP (sequence-related amplified polymorphism), were employed for identification and genetic diversity analysis of 35 elite late-bolting radish cultivars. Detected by 35 RAPD primers, 22 ISSR primers and 17 SRAP primer combinations, the proportions of polymorphic bands were 85.44%, 85.2% and 85.41%, respectively, and the mean genetic similarity coefficients between pairs of genotypes were 0.781, 0.787 and 0.764, respectively. Each of the three molecular marker systems can identify all the cultivars. Five sets of three-RAPD primers, 3 sets of three-ISSR primers and 16 sets of three-SRAP primer combinations were able to distinguish all the cultivars. A linear relationship was observed between Resolving power (Rp) of a primer and its ability to distinguish genotypes. The 35 cultivars were clustered into three major groups based on the RAPD, ISSR and marker combination data with UPGMA, which are in high accordance with their own origins and main characteristics. The results demonstrated that these three marker systems could be useful for identification and genetic diversity analysis of radish cultivars. 相似文献
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A. U. Rehman R. J. Mailer A. Belaj R. De La Rosa H. Raman 《The Journal of Horticultural Science and Biotechnology》2013,88(6):647-653
SummaryOlive production in Australia has continued to increase in recent years, however there remains a high degree of confusion on the genetic identities of the cultivars being grown. In the present study, seven microsatellite (simple sequence repeat; SSR) loci were used to identify a set of 53 olive tree samples from different sources. The microsatellite DNA profiles of all 53 tree samples, including seven unknown trees, were compared with the SSR profiles of 14 reference olive cultivars. A total of 60 fragments (alleles), averaging 8.57 alleles per microsatellite locus, were amplified. High average values were found for the observed heterozygosity, the expected heterozygosity, and the polymorphic information content (0.73, 0.74, and 0.72, respectively). While all seven microsatellite markers proved useful for characterisation and identification purposes, a combination of three SSR primer pairs (DCA9, DCA18, and EM030) was sufficient to distinguish all 53 olive samples. The microsatellite allelic profiles allowed the 53 tree samples to be grouped into 23 genotypes. The allelic profiles of 14 of these genotypes matched with their reference cultivars, while the genetic identities of the remaining nine genotypes could not be confirmed. Some of these unknown genotypes may have been derived from feral olive trees, or were due to mislabelling and/or planting errors among Australian olive cultivars. Our results confirm the usefulness of microsatellite markers as a tool for cultivar differentiation and identification, and indicate the need for reliable identification of mother plants for commercial propagation. 相似文献