Changes in the spawning habitat of two small pelagic fish in the Northwestern Mediterranean

We investigated the effects of three sea surface oceanographic variables (temperature, salinity, and chlorophyll a) on the abundance of eggs and larvae of two summer‐spawning species in the NW Mediterranean Sea, the anchovy Engraulis encrasicolus and the round sardinella Sardinella aurita, based on data from ichthyoplankton surveys carried out in the 1980s, 2000s, and 2010s. The environmental data showed an increase in seawater temperature and salinity along time, coupled with a decrease in chlorophyll a (proxy for primary production). These long‐term directional changes in environmental conditions helped explain the important reduction observed in the abundance of eggs and larvae of anchovy, as well as shrinking of spawning habitat in this species. At the same time, the probability of occurrence of round sardinella has increased from practically zero in the 1980s to probabilities near 1 along the coastal area of the study region in the two decades of the 21st century. Given that the trends observed in the environmental variables along the three decades of study are expected to continue during the 21st century, as a consequence of climate change, the spawning habitat of anchovy is expected to continue decreasing, while round sardinella habitat can expand. Considering that anchovy is of high commercial importance in NW Mediterranean fisheries, while round sardinella has very low commercial interest, our results show that the viability of small pelagic fisheries in the area may be compromised.     

Modelling Atlantic mackerel spawning habitat suitability and its future distribution in the north‐west Atlantic

We investigated the effect of environmental conditions on Atlantic mackerel spawning habitat in the southern Gulf of St. Lawrence (sGSL). Based on generalized additive models, we (i) modelled the optimal spawning habitat of mackerel in the sGSL using daily egg production (DEP) in June, (ii) predicted known and new potential present spawning habitats in the GSL and the north‐west Atlantic, and (iii) assessed how they respond to future climate change. Our findings showed that both mackerel presence–absence and given‐presence DEP were associated with sea surface temperature (10–16.5°C), salinity above 31 and depth < 120 m. Adding zooplankton showed a marked effect on the DEP given‐presence compared to the presence–absence. Predictions of spawning habitats under present (1999–2012) and future scenario (2066–2085) conditions were estimated from the presence–absence model without zooplankton, using physical conditions of the BNAM. Under present conditions, our model predicted well the main spawning habitat in the sGSL and other known secondary spawning habitats in the northern GSL (nGSL), the western and southern Newfoundland, and the north‐west Atlantic coast. Under future conditions, our study suggests that spawning habitats in the sGSL and the nGSL would expand. Our results, therefore, suggest that mackerel could benefit from a warmer GSL, minimizing the potential for a northward migration of the stock due to decreasing suitability of the sGSL as its main spawning ground, and a new but spatially limited potential habitat in Newfoundland coasts. These results can be used to inform stock management and develop adaptive management plans in the context of climate change.     

Water levels in a highland lake control the quantity and quality of spawning habitat for a littoral‐spawning galaxiid fish

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Underwater evaluation of habitat partitioning in a European river between a non‐native invader,the racer goby and a threatened native fish,the European bullhead

We conducted underwater surveys using SCUBA gear to examine habitat and microhabitat competition between the Ponto‐Caspian racer goby Babka gymnotrachelus and native European bullhead Cottus gobio to assess the potential for competitive displacement of the native species by the invading species. In summer, 88 surveys were made in a tributary of the River Vistula within defined benthic areas across the entire width of the river bed. The occurrence of fish by total length class (small: <6 cm; large: >6 cm) and environmental conditions (depth, water velocity, substratum type, plant cover, shelter type) was recorded. We found a substantial separation between the species and size classes in relation to substratum, shelter type and water velocity. European bullheads were limited to lotic areas with stony bottoms, whereas racer gobies also occupied lentic areas over sand or mud. European bullheads usually took refuge under stones in contrast to a wider range of shelters used by racer goby, including tree roots and rubbish. In general, the breadth of habitat used by the racer goby was wider than that of the European bullhead, although habitat overlap between the species was not statistically significant except for the type of shelter occupied by small fish, selecting smaller stones. An inverse relationship was observed between small European bullheads and all racer gobies in areas where they co‐occurred, suggesting that invader may be having an adverse effect on the distribution and habitat use of small native bullheads, particularly in areas of moderate water velocities over small stones and gravel.     

Meta‐analysis of growth rates for a circumpolar fish,the northern pike ( Esox lucius), with emphasis on effects of continent,climate and latitude

For circumpolar species, little is known on how somatic growth rates can vary at large, transcontinental spatial scales. In this study, a meta‐analysis of growth rates was conducted for northern pike ( Esox lucius) across North America and Eurasia. Growth rates of northern pike did not differ between North American and ‘coastal Eurasian’ pike (e.g., UK, Ireland, Sweden), while growth rates for both of these groups were significantly higher compared to ‘inland Eurasian’ pike (mainly in Russia). There was no difference in growth between lentic and lotic habitats on either continent. In North America, pike growth was positively correlated with temperature, but in Eurasia, pike growth correlated poorly with most climatic variables. Similarly, maximum longevity in pike populations was significantly predicted by latitude in North America, but not in Eurasia. After standardising annual pike growth by the thermal opportunity for growth, a highly significant countergradient growth relationship was found for North American pike, while a significant, but considerably less predictive countergradient growth relationship was found for Eurasian pike. This study provides novel insights into the ecology of a circumpolar species and how populations function at extraordinarily large spatial scales. First, pike appear to be cosmopolitan across hydrologic habitats having fast or slow growth in either lentic or lotic environments. Secondly, continental‐scale differences in pike growth rates are suggestive of major genetic and life‐history differences. Finally, variable climate–growth relationships and countergradient growth patterns indicate that global climate change is likely to affect circumpolar fishes like pike in complex, nonlinear ways.     

Mycobacteria in aquarium fish: results of a 3‐year survey indicate caution required in handling pet‐shop fish

Fish are commonly infected with non‐tuberculous mycobacteria (NTM), which should be regarded as potential pathogens when handling aquarium fish and equipment. This study examined 107 aquarium fish from pet shops. Cultivation of the fish samples using different selective media was conducted for identification of NTM. Isolates were identified using the GenoType Mycobacterium common mycobacteria and additional species assays, sequencing of the 16S rRNA and rpoB genes, and real‐time PCR assay for identification of Mycobacterium (M.) marinum. Among the investigated fish, 79.4% (85/107) were positive for mycobacteria, with 8.2% (7 of 85) having two mycobacterial species present. Among the positive fish, the common pathogens M. marinum, Mycobacterium fortuitum (M. fortuitum group) and Mycobacterium chelonae were identified in approx. 90% of fish and other NTM species in 10%, including Mycobacterium peregrinum/septicum, Mycobacterium gordonae, Mycobacterium arupense, Mycobacterium kansasii, Mycobacterium ulcerans and Mycobacterium setense. The well‐known human pathogen M. marinum was present in 10.6% of the positive fish (9 of 85). The species of mycobacteria identified in the study are not only recognized as aquarium fish pathogens, but can also cause pathology in humans. Microbiological and clinical communities should therefore be sensitized to the role of NTM in infections associated with exposure to aquarium fish.     

Evaluating spatio‐temporal variability in the habitat quality of Atlantic cod (Gadus morhua) in the Gulf of Maine

Reduced abundance and contracted spatial distribution of Atlantic cod, Gadus morhua, in the Gulf of Maine (GOM) may indicate large spatio‐temporal variation in their habitat quality. Season‐specific Habitat Suitability Index (HSI) models were developed to quantify such variation in the offshore GOM management area. Data used were non‐zero cod catch rates with calibrations from the Northeast Fisheries Science Center (NEFSC) spring and fall bottom trawl surveys over the period 1982–2013 and key physical environmental variables including depth, bottom temperature, bottom salinity and sediment types. Significant declines were found in the average HSI across the study area in the springs of early 2000s and 2010s. These low average HSI values coincide with reduced age‐1 recruitment of GOM cod stock after the mid‐1990s. Moreover, the western coastal areas of the GOM generally exhibited higher average HSI values than the eastern coastal areas, whereas the offshore areas always had the lowest average HSI. Relatively higher cod survey catch rates in the western GOM may imply positive influences of environmental controls on the distribution of GOM cod.     

Effect of environmental conditions on the seasonal and inter‐annual variability of small pelagic fish abundance off North‐West Africa: The case of both Senegalese sardinella

The objective of this study was to assess the effect of environmental variations on the abundance of Sardinella aurita and Sardinella maderensis in Senegalese waters in the upwelling system. Monthly data indicating the abundance of sardinella were first estimated from commercial statistics, using Generalized Linear Model from 1966 to 2011. Abundance indices (AIs) were then compared with environmental indices, at the local scale, a Coastal Upwelling Index (CUI) and a coastal Sea Surface Temperature (SST) index, and on a large scale, the North Atlantic Oscillation (NAO), the Atlantic Multidecadal Oscillation (AMO) and the Multivariate El Niño Southern Oscillation Index (MEI), using correlations and times series analyses. The results showed that the abundance of sardinella is determined by a strong seasonal pattern and inter‐annual fluctuations. The abundance of S. aurita peaked in spring and in autumn, whereas that of S. maderensis peaked in the warm season (July–September). The trend of the sardinella abundance was significantly correlated with the CUI, especially in autumn and spring. Interannual fluctuations of S. maderensis and S. aurita abundance are, respectively, driven by the precocity and the duration of the upwelling season that is attributed to distinct migration patterns. Both sardinella species also respond with a delay of around 4 years to the winter NAO index and the autumn CUI, and the AMO index, respectively, both related to migration patterns. The wide variations in sardinella biomass are caused by variations in environmental conditions, which should be considered in the implementation of an ecosystem‐based approach in sardinella stocks management.     

Effects of sedimentation on an endangered benthic fish,Cobitis shikokuensis: is sediment‐free habitat a requirement or a preference?

A negative correlation between the degree of fine sediment deposition and the abundance of stream benthic fishes has often been reported, although the causal mechanisms for this effect are not fully understood. To better understand the influence of sedimentation, it is important to clarify whether it alters the habitat required by fish, or merely preferred by them. We conducted two enclosure experiments in the field to examine (i) whether an endangered benthic fish, Cobitis shikokuensis, prefers sediment‐free substrate and (ii) whether fine sediment deposition has negative effects on the physiological condition of C. shikokuensis. The first experiment, which used three types of substrates, ‘cobble’, ‘pebble’ and ‘mixture of fine sediment and pebbles’, showed that C. shikokuensis avoided the mixture. The second experiment, which compared the physiological condition of fish reared in enclosures with either a pebble or mixture substrate, showed that the condition of the fish in the latter group declined more quickly. These results suggest that, for C. shikokuensis, sediment‐free substrate is a habitat requirement, not merely a preference, and that excessive input of fine sediment due to human activities can cause a decline in the population of this species.     

The effect of lake morphometry on thermal habitat use and growth in Arctic charr populations: implications for understanding climate‐change impacts

Oxygen stable isotope temperature reconstruction methods were used to estimate mean experienced summer temperatures from growth zones within individual Arctic charr otoliths sampled from lakes with contrasting morphologies but proximate locations. For either lake, otolith‐estimated temperatures were not significantly related to back‐calculated growth. Fish in the smaller lake evidenced an increase in growth with age related to increasing use of cooler thermal habitats, with the use of thermal habitat possibly governed by predation risks. No relationships between age, growth or temperature were observed in the larger lake. Significant negative effects on back‐calculated growth were observed due to increasing air temperatures in the smaller and shallower lake, possibly owing to warmer surface and littoral waters and a limited amount of preferred cool‐water habitat. A similar relationship was not observed in the larger and deeper lake and indicated that resident Arctic charr were not as vulnerable to the impacts of temperature warming, possibly because of better behavioural thermoregulation opportunities in the cooler, deeper lake. Results provide evidence for differing climate‐influenced growth outcomes among proximately located populations, with outcomes likely to depend on the differences among habitats, including lake size and morphometry which may act to influence fish densities in available preferred thermal habitats.     

Replacement of fish oil with a DHA‐rich Schizochytrium meal on growth performance,activities of digestive enzyme and fatty acid profile of Pacific white shrimp (Litopenaeus vannamei) larvae

This trial was conducted to evaluate the effects of replacing dietary fish oil with Schizochytrium meal for Pacific white shrimp (Litopenaeus vannamei) larvae (initial body weight 4.21 ± 0.10 mg). Six test microdiets were formulated using Schizochytrium meal to replace 0 g/kg, 250 g/kg, 500 g/kg, 750 g/kg, 1000 g/kg or 1500 g/kg fish oil DHA. No significant differences were observed in survival, growth, final body length and activities of digestive enzyme among shrimp fed different diets (p > .05). No significant differences were observed in C20:5n‐3 (EPA) in muscle samples (p > .05). C18:3n‐3 and C20:4n‐6 in muscle increased as Schizochytrium meal replacement level increased (p < .05). No significant differences were observed in C22:6n‐3 (DHA) and n‐3 fatty acids among shrimp fed diets that algae meal replaced 0 g/kg ‐ 1000 g/kg of fish oil. Shrimp fed diet R150 had higher DHA content than other groups and had higher n‐3 fatty acids than that of shrimp fed diets R50, R75 and R100 (p < .05). C18:2n‐6, PUFA and n‐6 fatty acids in muscle increased, while n‐3/n‐6 ratio decreased with increasing algae meal replacement level from 0 g/kg to 1000 g/kg (p < .05). In conclusion, Schizochytrium meal could replace 1500 g/kg fish oil DHA in the microdiets without negatively affecting shrimp larvae survival, growth and activities of digestive enzyme.     

Spatial distribution of Antarctic minke whales (Balaenoptera bonaerensis) in relation to spatial distributions of krill in the Ross Sea,Antarctica

The spatial distribution of Antarctic minke whales in the Ross Sea with relation to spatial distributions of their prey – krill – was investigated in this study using generalized additive models (GAMs). Spatial distributions of two species of krill (ice and Antarctic krill) were estimated by GAMs. Three abiotic factors – distance from the continental shelf break (800 m isobaths), the mean temperature and salinity from the surface to 200 m (MTEM‐200 and MSAL‐200), and latitude and longitude – were used as covariates for models of krill. Estimated spatial distributions of krill were then used with other covariates to model the spatial distribution of Antarctic minke whales. In the selected model of Antarctic minke whales, Antarctic krill were more influential than ice krill. The number of Antarctic minke whales increased as the density of Antarctic krill increased to around 1.5 g m^?2. Beyond that, the number of Antarctic minke whales decreased as the density of Antarctic krill increased. High densities of the Antarctic minke whales were estimated along the sea ice edge in the eastern part of the Ross Sea. Specifically, the densities were high in the north of the continental shelf break where low MTEM‐200 and MSAL‐200 and intermediate densities of Antarctic krill were observed. Further data collection is needed to investigate interannual variations and trends in their relationship. The results show that the spatial distribution of Antarctic minke whales is a function of longitude, distance from the shelf break, oceanographic condition (temperature and salinity), and densities of ice and Antarctic krill.     

The capacity of oysters to regulate energy metabolism‐related processes may be key to their resilience against ocean acidification

Bivalve molluscs, such as oysters, are threatened by shifts in seawater chemistry resulting from climate change. However, a few species and populations within a species stand out for their capacity to cope with the impacts of climate change‐associated stressors. Understanding the intracellular basis of such differential responses can contribute to the development of strategies to minimise the pervasive effects of a changing ocean on marine organisms. In this study, we explored the intracellular responses to ocean acidification in two genetically distinct populations of Sydney rock oysters (Saccostrea glomerata). Selectively bred and wild type oysters exhibited markedly different mitochondrial integrities (mitochondrial membrane potential) and levels of reactive oxygen species (ROS) in their hemocytes under CO₂ stress. Analysis of these cellular parameters after 4 and 15 days of exposure to elevated CO₂ indicated that the onset of intracellular responses occurred earlier in the selectively bred oysters when compared to the wild type population. This may be due to an inherent capacity for increased intracellular energy production or adaptive energy reallocation in the selectively bred population. The differences observed in mitochondrial integrity and in ROS formation between oyster breeding lines reveal candidate biological processes that may underlie resilience or susceptibility to ocean acidification. Such processes can be targeted in breeding programs aiming to mitigate the impacts of climate change on threatened species.     

Spatio‐temporal trends of the Krill fisheries in the Western Antarctic Peninsula and Southern Scotia Arc

Krill fisheries in Antarctica have concentrated their effort on the Western Antarctic Peninsula and Scotia Arc (WAP) in the last decades, following a steady increase in annual catch. Short‐term shifts in habitat exploration may have occurred and may be the cause for the increasing catch. Habitat use and effort in krill fisheries in the WAP during summer between 2012/2013 and 2016/2017, inclusive, were tested to determine how habitat use and effort reflected in the catch. Increasing trends in fishing tow duration and depth of fishing in deeper and colder waters were found. No association of the catch with the habitat explored was found, but catch was higher in years when the variability of explored habitat was lower. The relevance of these findings for fisheries management and conservation of Antarctic marine ecosystems is discussed.     

Screening of a high bioflocculant‐producing bacterial strain from an intensive fish pond and comparison of the bioflocculation effects with Rhodococcus erythropolis

A high bioflocculant‐producing bacterial strain BX‐13 isolated from an intensive fish pond by multiple subcultures and measured through primary screening and rescreening using kaolin. The strain BX‐13 was identified to belong to the same branch as Bacillus subtilis by morphological, physiological and biochemical, 16S rDNA gene sequencing, Blast homology search and multiple sequence alignments. The bioflocculation potential of BX‐13 and Rhodococcus erythropolis was compared, using water from the intensive pond where BX‐13 was isolated. The results showed the number of colonies in the BX‐13 treatment was higher than that of the R. erythropolis treatment from day 10 to the end of the experiment (p < 0.05). The numbers of both BX‐13 and R. erythropolis in the water body peaked on day 15, with 2.23 × 10⁷ cfu/L and 9.90 × 10⁶ cfu/L respectively. The bioflocculation volume (BFV) in water increased and then stabilized in both BX‐13 and R. erythropolis treatments. The BFV in BX‐13 peaked on day 25 (52.13 ml/L) and R. erythropolis peaked on day 30 (22.63 ml/L). At the end of the experiment, the BFV of the BX‐13 treatment was higher than the R. erythropolis treatment (p < 0.05). In conclusion, B. subtilis BX‐13 has a very strong flocculation effect, and merits further research into its application for water quality regulation in aquaculture systems.     

Using Bacillus subtilis E20‐fermented soybean meal as replacement for fish meal in the diet of orange‐spotted grouper (Epinephelus coioides,Hamilton)

The potential of Bacillus subtilis E20‐fermented soybean meal (FSBM) as a partial alternative component of fish meal (FM) in fed diets of orange‐spotted grouper (Epinephelus coioides) was evaluated in this study. An FM‐based diet and seven diets containing 10%, 20% and 30% and 10%, 20%, 30% and 40% of FM replaced by soybean meal (SBM) and FSBM, respectively, were fed to grouper for 84 days to evaluate possible substitution levels of FM by tracking growth performance, digestive enzyme activity and morphological changes in the liver and distal intestine. No significant differences in survival and muscle composition of grouper were found between controls and treatments. Growth performance and feed efficiency of fish fed diets with FM replaced by FSBM up to 30% were not significantly different from controls, whereas significantly decreased growth performance and feed efficiency occurred with diets containing >20% of SBM. Based on the feed efficiency, the maximum substituted levels of FM by SBM and FSBM in grouper diets were 18.36% and 29.32%, respectively, based on broken‐line analyses. Histopathological changes in the liver and distal intestine, and significantly lower activity levels of digestive enzymes, including pepsin in the stomach and trypsin, chymotrypsin, amylase and lipase in the distal intestine, were found in fish fed a diet containing 30% of FM replaced by SBM. However, these parameters were improved by the substitution of FSBM. It is therefore believed that FSBM has great potential to be used as a protein source in grouper diets in partial replacement of FM.     

An evaluation of fish health‐management practices and occupational health hazards associated with Pangasius catfish (Pangasianodon hypophthalmus) aquaculture in the Mekong Delta,Vietnam

This study aimed to evaluate the current status on the use of probiotics, disinfectants and antimicrobials in hatcheries, nurseries and grow‐out farms producing Pangasius catfish (Pangasianodon hypophthalmus) in the Mekong Delta, Vietnam. Semi‐structured interviews were conducted with 83 aquaculture enterprises (15 hatcheries, 32 nurseries and 36 grow‐out farms). Farmers reported use of a total of 24 different antimicrobials, e.g. for treatment of bacillary necrosis and motile aeromonad septicaemia, and a variety of disinfectants, probiotics and nutritional supplements. In contrast to small‐scale farmers, all large‐scale grow‐out farmers studied were certified and therefore had higher levels of formal education and specialized aquaculture training to diagnose and treat diseases. All farmers prepared their own medicated feed with a high risk of treatment failure, negative environmental impact from released antimicrobials and resistance development. Small‐scale farmers were at particular occupational health risks when handling antimicrobials and other chemicals, e.g. mixing medicated feed with bare hands. There is an urgent need to improve knowledge and use innovative approaches, e.g. private‐public partnerships, to assure a prudent use of chemicals, to improve capacity and access to disease diagnosis, particularly for small‐scale grow‐out farmers and nurseries. Efforts to control use of antimicrobials in aquaculture should be coordinated with the livestock and human health sectors taking an One‐Health approach.