Soil nitrogen availability alters rhizodeposition carbon flux into the soil microbial community

Purpose

Soil microorganisms are important in the cycling of plant nutrients. Soil microbial biomass, community structure, and activity are mainly affected by carbon substrate and nutrient availability. The objective was to test if both the overall soil microbial community structure and the community-utilizing plant-derived carbon entering the soil as rhizodeposition were affected by soil carbon (C) and nitrogen (N) availability.

Materials and methods

A ¹³C-CO₂ steady-state labeling experiment was conducted in a ryegrass system. Four soil treatments were established: control, amendment with carboxymethyl cellulose (CMC), amendment with ammonium nitrate (NF), combined CMC and NF. Soil phospholipid fatty acid (PLFA) and ¹³C labeling PLFA were extracted and detected by isotope ratio mass spectrometer.

Results and discussion

The combined CMC and NF treatment with appropriate C/N ratio (20) significantly enhanced soil microbial biomass C and N, but resulted in lower soil inorganic N concentrations. There was no significant difference in soil PLFA profile pattern between different treatments. In contrast, most of the ¹³C was distributed into PLFAs 18:2ω6,9c, 18:1ω7c, and 18:1ω9c, indicative of fungi and gram-negative bacteria. The inorganic-only treatment was distinct in ¹³C PLFA pattern from the other treatments in the first period of labeling. Factor loadings of individual PLFAs confirmed that gram-positive bacteria had relatively greater plant-derived C contents in the inorganic-only treatment, but fungi were more enriched in the other treatments.

Conclusions

Amendments with CMC can improve N transformation processes, and the ryegrass rhizodeposition carbon flux into the soil microbial community is strongly modified by soil N availability.

     

Functional and structural responses of bacterial and fungal communities from paddy fields following long-term rice cultivation

Purpose

Rice paddy soils undergo pedogenesis driven by periodic flooding and drainage cycles that lead to accumulation of organic matter and the stratification of nutrients and oxygen in the soil profile. Here, we examined the effects of continuous rice cultivation on microbial community structures, enzyme activities, and chemical properties for paddy soils along a chronosequence representing 0–700 years of rice cropping in China.

Materials and methods

Changes in the abundance and composition of bacterial and fungal communities were characterized at three depths (0–5, 5–10, and 10–20 cm) in relation to organic carbon, total nitrogen, dissolved organic carbon, microbial biomass carbon/nitrogen, and activities of acid phosphatase, invertase, and urease.

Results and discussion

Both soil organic carbon and total nitrogen increased over time at all three depths, while pH generally decreased. Microbial abundance (bacteria and fungi) and invertase and urease activity significantly increased with the duration of rice cultivation, especially in the surface layer. Fungal abundance and acid phosphatase activity declined with depth, whereas bacterial abundance was highest at the 5–10-cm soil depth. Profiles of the microbial community based on PCR-DGGE of 16S rRNA indicated that the composition of fungal communities was strongly influenced by soil depth, whereas soil bacterial community structures were similar throughout the profile.

Conclusions

Soil bioactivity (microbial abundance and soil enzymes) gradually increased with organic carbon and total nitrogen accumulation under prolonged rice cultivation. Microbial activity decreased with depth, and soil microbial communities were stratified with soil depth. The fungal community was more sensitive than the bacterial community to cultivation age and soil depth. However, the mechanism of fungal community succession with rice cultivation needs further research.

     

Severe drought-induced community tolerance to heat wave. An experimental study on soil microbial processes

Purpose

The purposes of this study were to identify the influence of a severe drought period on the impact of a subsequent heat–drought disturbance on the microbial community of a Mediterranean agricultural soil and particularly to highlight the long-term effects on the microbial catabolic profiles.

Materials and methods

We performed an experiment in microcosms and applied the MicroResp? method on soil microbial communities.

Results and discussion

A 21-day combined heat–drought disturbance had less impact on soil microbial communities pre-exposed to a 73-day severe drought than on those that were not pre-exposed. These differences were observed not only for biomass and physiological traits (basal respiration, qCO₂), but also for catabolic microbial structure evolution during the recovery time.

Conclusions

These observations suggest that the physiological stress imposed by the initial severe drought changed the microbial catabolic structure or physiological state and favoured a portion of the microbial community best adapted to cope with the final heat–drought disturbance. Consequently, the initial severe drought may have induced a community tolerance to the subsequent heat wave. In this study, we also note that resilience was, more than resistance, an indicator of pre-exposure to stress. In the context of assessing the effects of extreme climatic events on soil microbial processes, these results suggest that future studies should take into account the historic stress of habitats and resilience parameters.

     

Impacts of continuous excessive fertilization on soil potential nitrification activity and nitrifying microbial community dynamics in greenhouse system

Purpose

Sampling and analysis of greenhouse soils were conducted in Shouguang, China, to study continuous excessive fertilization effect on nitrifying microbial community dynamics in greenhouse environment.

Materials and methods

Potential nitrification activity (PNA), abundance, and structure of nitrifying microbial communities as well as the correlations with soil properties were investigated.

Results and discussion

Short-term excessive fertilization increased soil nutrient contents and the diversity of nitrifying microbial communities under greenhouse cultivation. However, the abundance and diversity of nitrifying communities decreased greatly due to the increase of soil acidity and salinity after 14 years of high fertilization in greenhouse. There was a significant positive correlation between soil PNA and the abundance of ammonia-oxidizing bacteria (AOB) but not that of ammonia-oxidizing archaea (AOA) in topsoil (0–20 cm) when pH ≥7. Soil PNA and AOB were strongly influenced by soil pH. The groups of Nitrososphaeraceae, Nitrosomonadaceae, and Nitrospiraceae were predominant in the AOA, AOB, and nitrite-oxidizing bacteria (NOB) communities, respectively. Nitrifying community structure was significantly correlated with soil electrical salinity (EC), organic carbon (OC), and nitrate nitrogen (NO₃ ^?–N) content by redundancy analysis (RDA).

Conclusions

Nitrification was predominated by AOB in greenhouse topsoil with high fertilizer loads. Soil salinity, OC, NO₃ ^?–N content, and pH affected by continuous excessive fertilization were the major edaphic factors in shaping nitrifying community structure in greenhouse soils.

     

Microbial inoculation of seeds characteristically shapes the rhizosphere microbiome in <Emphasis Type="Italic">desi</Emphasis> and <Emphasis Type="Italic">kabuli</Emphasis> chickpea types

Purpose

Chickpea is generally cultivated after seed treatment with host-specific Mesorhizobium ciceri, the nitrogen-fixing bacterium forming root nodules. Some species of free-living cyanobacteria are capable of nitrogen fixation. We examined the rhizosphere microbiota changes and the potential for plant growth promotion by applying a free-living, nitrogen-fixing cyanobacterium and the biofilm formulation of cyanobacterium with M. ciceri, relative to M. ciceri applied singly, to two each of desi and kabuli varieties of chickpea.

Materials and methods

Denaturing gradient gel electrophoresis (DGGE) profiles of archaeal, bacterial and cyanobacterial communities and those of phospholipid fatty acids (PLFAs) were obtained to evaluate the changes of the microbial communities in the chickpea rhizosphere. Plant growth attributes, including the pod yields and the availabilities of soil macronutrients and micronutrients, were monitored.

Results and discussion

The DGGE profiles showed distinct and characteristic changes due to the microbial inoculation; varietal differences exerted a marked influence on the archaeal and cyanobacterial communities. However, bacterial communities were modulated more by the type of microbial inoculants. Abundance of Gram-negative bacteria (in terms of notional PLFAs) differed between the desi and the kabuli varieties inoculated with M. ciceri alone, and the principal component analysis of PLFA profiles confirmed the characteristic effect of microbial inoculants tested. Microbial inoculation led to increases in the 100-seed weight and differential effects on the concentrations of available nitrogen and phosphorus, and those of iron, zinc and copper, suggesting their increased cycling in the rhizosphere.

Conclusions

Microbial inoculation of chickpea brought out the characteristic changes in rhizosphere microbiota. Consequently, the growth promotion of chickpea and nutrient cycling in its rhizosphere distinctively differed. Further studies are needed to analyse the association and dynamic changes in the microbial communities to define the subset of microorganisms selected by chickpea in its rhizosphere and the influence of microbial inoculation.

     

Effect of nanoparticles on crops and soil microbial communities

Purpose

Nanoparticles (NPs) have received increased attention in recent past due to their unique distinct properties. Metal-based NPs are widely used in chemical and allied sector. Most of the research is directed to study the efficiency of NPs in medicine and agriculture. The aim of this review is to explore the possible threats posed by toxicity of various NPs on plants and microbial diversity.

Materials and methods

First, major sources of NPs to the environment were analyzed. The effects of metal-based NPs on the microbiota and plants are presented in this review. The results obtained by the authors during last 12 years of research are used.

Results and discussion

The exposure of soil to nanoparticles causes a decrease in soil microbial biomass and enzymatic activity, which impacts microbial community composition including yeasts, bacteria, fungi, and biological diversity. The effects of NPs on plants result in various types of abnormalities. Nanoparticles can also pose risks to human health.

Conclusions

Increased applications of NPs pose a threat to beneficial microbial communities as well as crops and soils. Thus, it is important to explore whether NPs could compromise crop yield, soil properties, soil organisms, and functional activities of soil.

     

Soil microbial abundance and community structure vary with altitude and season in the coniferous forests,China

Purpose

Soil microbes control the bioelement cycles and energy transformation in forest ecosystems, and are sensitive to environmental change. As yet, the effects of altitude and season on soil microbes remain unknown. A 560 m vertical transitional zone was selected along an altitude gradient from 3023, 3298 and 3582 m, to determine the potential effects of seasonal freeze-thaw on soil microbial community.

Materials and methods

Soil samples were collected from the three elevations in the growing season (GS), onset of freezing period (FP), deeply frozen period (FPD), thawing period (TP), and later thawing period (TPL), respectively. Real-time qPCR and polymerase chain reaction denaturing gradient gel electrophoresis (PCR-DGGE) were used to measure the abundance and structure of soil microbial community.

Results and discussion

The bacterial, archaeal, and fungal ribosomal DNA (rDNA) copy numbers decreased from GS to freezing stage (FP and FPD) and then increased in thawing stage (TP and TPL). Similarly, the diversity of microbial community varied with seasonal freeze-thaw processes. The diversity index (H) of the bacterial and archaeal communities decreased from GS to FP and then increased to TPL. The fungal community H index increased in the freezing process.

Conclusions

Our results suggested that abundance and structure of soil microbial community in the Tibetan coniferous forests varied by season and bacterial and archaeal communities respond more promptly to seasonal freeze-thaw processes relative to fungal community. This may have important implications for carbon and nutrient cycles in alpine forest ecosystems. Accordingly, future warming-induced changes in seasonal freeze-thaw patterns would affect soil nutrient cycles via altering soil microbial properties.

     

Arsenic modulates the composition of anode-respiring bacterial community during dry-wet cycles in paddy soils

Purpose

Bacteria able to extracelluar respiration, which could be enriched in the anode of microbial fuel cells (MFCs), play important roles in dissimilatory iron reduction and arsenic (As) desorption in paddy soils. However, the response of the bacteria to As pollution is unknown.

Materials and methods

Using soil MFCs to investigate the effects of As on anode respiring bacteria (ARB) communities in paddy soils exposed to As stress. The soil MFC performances were evaluated by electrochemical methods. The bacterial community compositions on anodes were studied using Illumina sequencing.

Results and discussion

In wet 1 phase, polarization curves of MFCs showed cathode potentials were enhanced at low As exposure but inhibited at high As exposure. In the meantime, anode potentials increased with As levels. The dry-wet alternation reduced As levels in porewater and their impacts on electrodes microorganisms. Arsenic addition significantly influenced the anode microbial communities. After dry-wet cycles, Deltaproteobacteria dominated in the anode with high As.

Conclusions

The dynamic changes of the communities on cathodes and anodes of soil MFCs in paddy soils with different As addition might be explained by their different mechanisms for As detoxification. These results provide new insights into the microbial evolution in As-contaminated paddy soils.

     

Impacts of sea-level rise on sediment microbial community structure and function in two New England salt marshes,USA

Purpose

There is growing evidence for a tight linkage between the structure and function of microbial communities and for the importance of this relationship in ecosystem responses to disturbances such as sea-level rise (SLR). While the role of plants in determining the capacity of salt marshes to keep pace with SLR through sediment accretion has received considerable attention, the role of microbes in offsetting these gains via decomposition is less understood.

Materials and methods

We conducted a controlled experiment to determine the structural and functional responses of microbes to SLR, using soil from the low intertidal zone of two New England salt marshes in Massachusetts and New Hampshire, USA. We used terminal restriction fragment length polymorphisms (t-RFLPs) generated from microbial 16S rDNA to evaluate community composition and diversity and focused on changes in respiration with SLR, measured as total respired carbon normalized by percent organic matter, as a surrogate for decomposition rate.

Results and discussion

We observed a 24% reduction in microbial respiration with a simulated rise in sea level of 40 cm. This functional change was accompanied by a structural shift in microbial community composition among samples from New Hampshire but not Massachusetts, assessed via principal coordinate analysis of t-RFLP data. We also found greater microbial diversity within our New Hampshire samples, suggesting that low diversity may constrain community compositional shifts.

Conclusions

Our results suggest that decreased microbial respiration could alleviate the negative effects of SLR on salt marsh surface elevation, at least in the short term, and that the diversity of the soil microbial community may positively influence functional responses such as respiration.

     

Temporal dynamics of fungal communities in soybean rhizosphere

Purpose

Many biotic and abiotic factors influence the structural and functional diversity of microbial communities in the rhizosphere. This study aimed to understand the dynamics of fungal community in the soybean rhizosphere during soybean growth and directly compare the influence of abiotic and biotic factors in shaping the fungal communities across different growth periods.

Materials and methods

High-throughput sequencing based on internal transcribed spacer (ITS) region, quantitative PCR, and statistical analysis approaches were used to measure the fungal community structure, abundance, and dynamic changes of 63 rhizosphere soil samples which were taken from different fertilization regimes and rhizobium inoculation treatments during three soybean growth stages.

Results and discussion

Among the taxa examined, more than 16 fungal classes were detected from the 21 soil samples. Sordariomycetes was the most abundant class, followed by Dothideomycetes, Agaricomycetes, and Eurotiomycetes. Soybean growth stage was the most important factor determining the diversity patterns of the fungal communities. Fungal community diversity was closely related to the base-fertilizer application, and fungal community richness was associated with rhizobium inoculation. Beta diversity of the fungal community based on the Bray-Curtis distance was significantly related to plant growth stage. Network analysis showed that mutual cooperation among fungal taxa became more intimate during the plant growth.

Conclusions

Compared with edaphic properties, plant growth stage was the dominant factor in determining soil fungal community dynamics. Base-fertilizer and rhizobium inoculation affected the alpha diversity of the soil fungi.

     

The influence of soil properties and geographical distance on the bacterial community compositions of paddy soils enriched on SMFC anodes

Purpose

Exoelectrogens are important microorganisms playing crucial roles in the biogeochemistry of elements in paddy soils. But it remains unclear how the soil properties and geographical distances affect the exoelectrogen communities of Chinese paddy soils. So the objectives of this study were to investigate the diversity and composition of these microbial communities which were enriched on the anodes of soil microbial fuel cells (SMFCs) and to elucidate the links between the microbial community compositions and their driving factors.

Materials and methods

We used Illumina HiSeq sequencing to determine the bacterial community structures which were enriched on the anodes of SMFCs. Variance partitioning analysis (VPA) was used to obtain the contribution of soil properties and geographical distance to the variations of bacterial communities.

Results and discussion

Active bacterial community on anodes of the closed circuit SMFCs differs significantly from the control open circuit SMFCs. Anodes of all the closed circuit SMFCs were characterized by the presence of high numbers of Nitrospira and Anaerolineae. Taxonomic similarities and phylogenetic similarities of bacterial communities from different paddy soil samples across North and South China were found to be significantly correlated with geographical distances. The relationship between the similarities and the geographic distance exhibited a distance-decay relationship. VPA showed that both geographical distances and soil properties affect the structure of bacterial communities detected on anodes.

Conclusions

Our study gives a foundation for understanding the distribution and diversity of exoelectrogens in paddy soils and elucidates the links between the distribution and the diversity of extracellular respiring bacteria and their driving factors. Furthermore, this study also identifies the crucial factors which should be used to evaluate the response of exoelectrogens to environmental perturbations in Chinese paddy soils.

     

Assessing soil microbial respiration capacity using rDNA- or rRNA-based indices: a review

Purpose

Understanding soil heterotrophic respiration in relation to microbial properties is not only fundamental to soil respiration modelling, prediction, and regulation through management, but also essential to interpreting microbial community dynamics from an ecologically meaningful perspective. This paper reviewed the recent advances in knowledge and proposed future directions for exploring the respiration-microbe relationships by means of rDNA- or rRNA-based indices (i.e. rDNA copies, rRNA copies, and rDNA- or rRNA-based community structures).

Materials and methods

We first elucidated the theoretical basis for using rDNA- or rRNA-based indices to probe into soil microbial respiration. Then, the published studies that simultaneously measured soil microbial respiration and the rDNA- or rRNA-based indices were synthesized, extracted, and analysed to further explore the respiration-microbe relationships. At last, the uncertainties and perspectives for establishing the respiration-microbe links were proposed and discussed.

Results and discussion

The rDNA- or rRNA-based indices are theoretically promising for pinpointing the relationships between soil heterotrophic respiration and microbial properties. Our systematic review suggested that the correlations between bacterial rDNA copies and microbial respiration are inconsistent across studies, while the fungal and archaeal rDNA (or ITS) copies showed moderately positive and negative correlations with soil microbial respiration, respectively. Bacterial 16S rDNA-based community structures were significantly correlated with soil microbial respiration in some studies, but not in some short-term situations. Although rRNA copies are widely used as the proxies of microbial activity, no significant correlations between rRNA copies and soil microbial respiration have been found in previous studies. Bacterial 16S rRNA-based community structures were correlated well with the short-term responses of soil microbial respiration to rewetting or labile carbon amendments and clearly outperformed other rDNA- or rRNA-based indices. As respiration-microbe relationships can be affected by many factors, such as soil physicochemical properties and even the analysis methods of microbial indices, the 69 previous studies included in this review actually provided limited information on them, and the aforementioned results still need to be further confirmed in future studies.

Conclusions and perspectives

Overall, the relationships between soil microbial respiration and rDNA- or rRNA-based indices are still far from being well established. Future research should be directed to systematically understanding the respiration-microbe links, with more attention to the fungus-, archaea- and RNA-related molecular indices. The relationships between microbial specific lineages and total respiration rates should be explored in future studies, and the effects of edaphic properties on the respiration-microbe relationships should also be evaluated.

     

Effects of different fertilization regimes on nitrogen and phosphorus losses by surface runoff and bacterial community in a vegetable soil

Purpose

Vegetables are major economic crops in China. Their cultivation usually involves high fertilizer application rates leading to significant losses of N and P to the wider environment, resulting in water contamination and low nutrient use efficiency. Hence, it is a matter of urgency to understand the mechanisms and factors that affect N and P losses in vegetable production systems in order to develop optimum fertilization regimes.

Materials and methods

Different fertilization regimes were applied in a long-term chili (Capsicum spp. L.) production soil to study the effects on nitrogen (N) and phosphorus (P) runoff losses, microbial biomass, microbial community, and crop yields. Three fertilization regimes were implemented: control (no fertilizer; CK), farmer’s fertilization practice (FFP), and site-specific nutrient management (SSNM). A fixed collection device was used to quantify the total volume of water output after each precipitation event. All water samples were analyzed for total nitrogen, ammonium nitrogen (NH₄⁺-N), nitrate nitrogen (NO₃^?-N), total phosphorus (TP), and available phosphorus (AP). Soil samples were collected for analysis of the physicochemical properties and for DNA extraction after chili harvest. High-throughput sequencing was used to further investigate the relationship between the microbial community and nutrient losses.

Results and discussion

The SSNM fertilizer regime resulted in a 23.3% yield increase and enhanced agronomic N use efficiency from 11.87 to 15.67% compared with the FFP treatment. Soil available nutrients (i.e., AN and AP) and ATP content increased significantly after SSNM implementation. Under the SSNM regime, N losses decreased by 25.8% compared with FFP but did not lead to significantly different P losses. High-throughput sequencing results showed that each treatment formed a unique microbial community structure. VPA results revealed that the microbial community structure was mainly (50.56%) affected by the interactions between N and P. Mantel results indicated that the soil properties that significantly affected soil microbial community structure followed the order: AP, AK, and salinity.

Conclusions

Our study has demonstrated that SSNM not only generates lower N losses but also provides higher contents of soil available nutrients and plant yield, which were mainly attributed to the multiple top dressings and meeting of the plants’ demand with adequate nutrient supplies. The combined data showed that the microbial community differentiation between the different fertilizer regimes was mainly linked to the interactions between N and P in the soil.

     

Effect of copper and zinc on microbial tolerance to triclosan in two soil types

Purpose

Sewage sludge and biosolid application to land is a common approach to fertilise soils, but sewage-derived contaminants like the antimicrobial agent triclosan, and heavy metals zinc and copper, are known to affect soil microbial communities. In this study, the tolerance to triclosan was examined for soil microbial communities chronically pre-exposed to one of two heavy metals (Cu or Zn) and the antimicrobial triclosan. This was investigated in two different soil types.

Materials and methods

The impacts of chronic exposure of copper, zinc and triclosan as individual compounds or in mixtures on soil microbial communities were assessed in soils collected from two sites. The first was a Horotiu sandy loam with ample carbon and nitrogen levels and the second was a Templeton silt loam with very low carbon and nitrogen levels. The end points used to characterise the response of the soil microbial community were biomass, metabolic activity and pollution-induced community tolerance (PICT) to triclosan (using Biolog EcoPlates). In addition, metabolic activities for individual substrates were examined and those that significantly changed with the applied treatments were identified.

Results and discussion

Exposure to mixtures of both triclosan and copper in the Horotiu sandy loam reduced microbial biomass, increased metabolic activity and reduced microbial tolerance to triclosan. The decrease in soil microbial tolerance correlated with an increased metabolic activity for N-acetyl-d-glucosamine providing a potential link between triclosan exposure and nitrogen mineralisation. Exposure to both triclosan and high zinc levels decreased microbial biomass in the Horotiu sandy loam but did not have an effect on microbial tolerance to triclosan. In the finer-textured and less fertile Templeton soil, microbial tolerance to triclosan and the microbial biomass were not impacted by copper/triclosan or zinc/triclosan mixtures.

Conclusions

Mixture effects could become a cause for concern when soil microbial communities are exposed to triclosan in fertile soils with copper concentrations in excess of 50 mg kg^?1 and could be especially important in the more coarsely textured soils. Current regulations for soil contaminants only consider the risk and effects of single contaminants. Greater protection of soil resources could result from considering mixture effects and soil types.

     

Dry cultivation enhances cadmium solubility in contaminated soils but minimizes cadmium accumulation in a leafy vegetable

Purpose

Water management has a strong influence on Cd solubility in agricultural soils, affecting Cd uptake in crops. In the process, sulfur interaction with other metals such as zinc may play an important role. A pot experiment was carried out to investigate the effects of water management coupled with zinc and sulfate amendment on Cd uptake by the leafy vegetable amaranth with a strong Cd accumulation tendency in its edible parts.

Materials and methods

The soils were amended with Cd, Cd+SO₄ and Cd+SO₄+Zn with no amendment as control. Then, the soils were flooded for 1 month, after which amaranth was grown with soil kept saturated (wet cultivation). In the succeeding planting, soils were tilled to aeration condition under which amaranth was grown again (dry cultivation). Soil and crop samples were collected and analysed for various parameters.

Results and discussion

The readily exchangeable quantities of Cd and Zn in the soil decreased under wet cultivation, increasing again under dry cultivation but to levels lower than those in the initial soil. Wet cultivation enhanced plant Cd concentration but reduced Zn accumulation compared to dry cultivation. Zn bioavailability was strongly affected by soil water status but failed to reduce Cd uptake by amaranth. Irreversible or slowly reversible changes occurred in Cd and Zn solubility and phytoavailability as soil water-saturated status was altered by periodic flooding events.

Conclusions

Dry cultivation with lower soil water content ensured high production with low Cd in the edible part of this leaf vegetable and so remains the recommended irrigation regime.

     

Biochar for crop production: potential benefits and risks

Purpose

Biochar, the by-product of thermal decomposition of organic materials in an oxygen-limited environment, is increasingly being investigated due to its potential benefits for soil health, crop yield, carbon (C) sequestration, and greenhouse gas (GHG) mitigation.

Materials and methods

In this review, we discuss the potential role of biochar for improving crop yields and decreasing the emission of greenhouse gases, along with the potential risks involved with biochar application and strategies to avoid these risks.

Results and discussion

Biochar soil amendment improves crop productivity mainly by increasing nutrient use efficiency and water holding capacity. However, improvements to crop production are often recorded in highly degraded and nutrient-poor soils, while its application to fertile and healthy soils does not always increase crop yield. Since biochars are produced from a variety of feedstocks, certain contaminants can be present. Heavy metals in biochar may affect plant growth as well as rhizosphere microbial and faunal communities and functions. Biochar manufacturers should get certification that their products meet International Biochar Initiative (IBI) quality standards (basic utility properties, toxicant assessment, advanced analysis, and soil enhancement properties).

Conclusions

The long-term effects of biochar on soil functions and its fate in different soil types require immediate attention. Biochar may change the soil biological community composition and abundance and retain the pesticides applied. As a consequence, weed control in biochar-amended soils may be difficult as preemergence herbicides may become less effective.

     

Patterns and drivers of fungal diversity along an altitudinal gradient on Mount Gongga,China

Purpose

Fungi are essential components of soil microbial communities and have a crucial role in biogeochemical processes. Alpine regions are sensitive to climate change, and the importance of changes in fungal community composition along altitudinal gradients in alpine regions is hotly debated.

Materials and methods

We used 454 pyrosequencing approaches to investigate the fungal communities at 1600, 2300, 2800, 3000, and 3900 m above sea level along an altitudinal gradient on Mount Gongga.

Results and discussion

The results showed that Agaricomycetes, Sordariomycetes, and Tremellomycetes are the dominant classes at all sampling sites. Operational taxonomic unit richness decreased with increasing altitude, and the fungal communities were clustered into three groups that corresponded to altitudes of, i.e., 1600, 2300, and above 2800 m. The evenness of fungi was not significantly correlated with altitude, whereas beta diversities were significantly correlated with altitude. The distance-based redundancy analysis and Mantel test indicated that the composition of fungal assemblages was mostly driven by altitude and temperature.

Conclusions

Our results indicated that ecological processes possibly related to altitude and temperature play an important role in structuring fungal biodiversity along the elevational gradient. Our results highlight that different microbes may respond differently to environmental gradients.

     

Effect of grazing intensity on protozoan community,microbial biomass,and enzyme activity in an alpine meadow on the Tibetan Plateau

Purpose

The alpine meadow has received mounting attention due to its degradation resulting from overgrazing on the Tibetan Plateau. However, belowground biotic characteristics under varied grazing stresses in this ecosystem are poorly understood.

Materials and methods

Here, the responses of soil protozoan abundance, community composition, microbial biomass, and enzyme activity to five grazing patterns including (1) artificial grassland without grazing (AG), (2) winter grazing (WG), (3) grazing for 7 months within a fence (GF), (4) continuous grazing for a whole year (CG), and (5) natural heavy grazing (HG) were investigated for two continuous years. Soil protozoan community composition was investigated using the most possible number (MPN) method, and soil microbial biomass and enzyme activity were analyzed using chloroform fumigation extraction and substrate utilization methods, respectively. Multivariate statistical analysis, the analysis of variance (ANOVA), multiple comparisons, and correlation analysis were together performed.

Results and discussion

The WG treatment had the highest abundance of total protozoa (2342–2524 cell g^?1). Compared with AG treatment, HG treatment significantly reduced the abundance of soil total, flagellate and ciliate protozoa, and protease activities in 2012 and 2013. Significantly, lower soil microbial biomass nitrogen (MBN) was also observed in the HG (6.60 and 14.6 mg N kg^?1) than those in other four treatments (22.3–82.9 mg N kg^?1) both in 2012 and 2013, whereas significantly higher microbial biomass carbon (MBC) was observed in HG than that in AG treatment in 2012. Moreover, significantly positive correlations were detected between the abundance of soil protozoa and soil moisture, pH, organic C, total N, and MBN. Our results indicated that soil protozoa showed a negative response to increasing grazing intensities and therefore, suggesting that aboveground grazing practices also exerted strong impact on belowground protozoa, not only on soil microbial characteristics.

Conclusions

Soil protozoan community composition was apparently different between the HG treatment and other four grazing patterns and was potentially impacted by altered soil properties and MBC and/or MBN. Our results suggested that moderate grazing may sustain better belowground biotic diversity and ecosystem functioning in this alpine meadow on the Tibetan Plateau.

     

Evaluation of palygorskite for remediation of Cd-polluted soil with different water conditions

Purpose

The study aimed at comparing the effects of different water managements on soil Cd immobilization using palygorskite, which was significant for the selection of reasonable water condition.

Materials and methods

Field experiment was taken to discuss the in situ remediation effects of palygorskite on Cd-polluted paddy soils, under different water managements, using a series of variables, including pH and extractable Cd in soils, plant Cd, enzyme activity, and microorganism number in soils.

Results and discussion

In control group, the pH in continuous flooding was the highest under three water conditions, and compared to conventional irrigation, continuous flooding reduced brown rice Cd by 37.9%, and brown rice Cd in wetting irrigation increased by 31.0%. In palygorskite treated soils, at concentrations of 5, 10, and 15 g kg^?1, brown rice Cd reduced by 16.7, 44.4, and 55.6%; 13.8, 34.5, and 44.8%; and 13.1, 36.8, and 47.3% under continuous flooding, conventional irrigation, and wetting irrigation (p < 0.05), respectively. The enzyme activity and microbial number increased after applying palygorskite to paddy soils.

Conclusions

Continuous flooding was a good candidate as water management for soil Cd stabilization using palygorskite. Rise in soil enzyme activity and microbial number proved that ecological function regained after palygorskite application.

     

Biochar improves sediment microbial fuel cell performance in low conductivity freshwater sediment

Purpose

The low conductivity of sediments for mass and electron transport is the most severe limiting factor in sediment microbial fuel cells (SMFCs), so that sediment ameliorations yielded more remarkable effects than electrode improvements. The objective of this research was to enhance the electricity generation of SMFCs with amendments of biochar to freshwater sediments for conductivity enhancement.

Materials and methods

Laboratory-scale SMFCs were constructed and biochars were produced from coconut shells at different temperatures. Variations in the power output, electrode potential, internal resistance, total organic carbon (TOC) content, and microbial communities were measured.

Results and discussion

Amending with biochar reduced the charge transfer resistances of SMFCs and enriched the Firmicutes (mainly Fusibacter sp.) in the sediment, which improved the SMFC power generation by two- to tenfold and enhanced the TOC removal rate by 1.7- to fourfold relative to those without the amendment.

Conclusions

The results suggested that biochar amendment is a promising strategy to enhance SMFC power production, and the electrical conductivity of biochar should be considered important when interpreting the impact biochar has on the electrical performance of soil or freshwater sediment MFCs.