Microbial pathways for nitrous oxide emissions from sheep urine and dung in a typical steppe grassland

The aim of this study was to determine the responses of nitrifiers and denitrifiers to understand microbial pathways of nitrous oxide (N₂O) emissions in grassland soils that received inputs of sheep excreta. Sheep dung and synthetic sheep urine were applied at three different rates, simulating a single, double, or triple overlapping of urine or dung depositions in the field. Quantitative PCR and high-throughput sequencing were combined with process-based modeling to understand effects of sheep excreta on microbial populations and on pathways for N₂O production. Results showed that emissions of N₂O from urine were significantly higher than from dung, ranging from 0.12 to 0.78 kg N₂O-N ha^?1 during the 3 months. The N₂O emissions were significantly related to the bacterial amoA (r?=?0.373, P?<?0.001) and nirK (r?=?0.614, P?<?0.001) gene abundances. It was autotrophic nitrification that dominated N₂O production in the low urine-N rate soils, whereas it was denitrification (including nitrifier denitrification and heterotrophic denitrification) that dominated N₂O production in the high urine-N rate soils. Nitrifier denitrification was responsible for most of the N₂O emissions in the dung-treated soils. This study suggests that nitrifier denitrification is indeed an important pathway for N₂O emissions in these low fertility and dry grazed grassland ecosystems.     

Increases in soil CO<Subscript>2</Subscript> and N<Subscript>2</Subscript>O emissions with warming depend on plant species in restored alpine meadows of Wugong Mountain,China

Purpose

Ecosystem restorations can impact carbon dioxide (CO₂) and nitrous oxide (N₂O) emissions which are important greenhouse gasses. Alpine meadows are degraded worldwide, but restorations are increasing. Because their soils represent large carbon (C) and nitrogen (N) pools, they may produce significant amounts of CO₂ and N₂O depending on the plant species used in restorations. In addition, warming and N deposition may impact soil CO₂ and N₂O emissions from restored meadows.

Materials and methods

We collected soils from degraded meadows and plots restored using three different plant species at Wugong Mountain (Jiangxi, China). We measured CO₂ and N₂O emissions when soils were incubated at different temperatures (15, 25 or 35 °C) and levels of N addition (control vs. 4 g m^?2) to understand their responses to warming and N deposition.

Results and discussion

Dissolved organic C was higher in restored plots (especially with Fimbristylis dichotoma) compared to non-restored bare soils, and their soil inorganic N was lower. CO₂ emission rates were increased by vegetation restorations, decreased by N deposition, and increased by warming. CO₂ emission rates were similar for the three grass species at 15 and 25 °C, but they were lower with Miscanthus floridulus at 35 °C. Soils from F. dichotoma and Carex chinensis plots had higher N₂O emissions than degraded or M. floridulus plots, especially at 25 °C.

Conclusions

These results show that the effects of restorations on soil greenhouse gas emissions depended on plant species. In addition, these differences varied with temperature suggesting that future climate should be considered when choosing plant species in restorations to predict soil CO₂ and N₂O emissions and global warming potential.

     

Abundance of transcripts of functional gene reflects the inverse relationship between CH<Subscript>4</Subscript> and N<Subscript>2</Subscript>O emissions during mid-season drainage in acidic paddy soil

Agricultural management significantly affects methane (CH₄) and nitrous oxide (N₂O) emissions from paddy fields. However, little is known about the underlying microbiological mechanism. Field experiment was conducted to investigate the effect of the water regime and straw incorporation on CH₄ and N₂O emissions and soil properties. Quantitative PCR was applied to measure the abundance of soil methanogens, methane-oxidising bacteria, nitrifiers, and denitrifiers according to DNA and mRNA expression levels of microbial genes, including mcrA, pmoA, amoA, and nirK/nirS/nosZ. Field trials showed that the CH₄ and N₂O flux rates were negatively correlated with each other, and N₂O emissions were far lower than CH₄ emissions. Drainage and straw incorporation affected functional gene abundance through altered soil environment. The present (DNA-level) gene abundances of amoA, nosZ, and mcrA were higher with straw incorporation than those without straw incorporation, and they were positively correlated with high concentrations of soil exchangeable NH₄⁺ and dissolved organic carbon. The active (mRNA-level) gene abundance of mcrA was lower in the drainage treatment than in continuous flooding, which was negatively correlated with soil redox potential (Eh). The CH₄ flux rate was significantly and positively correlated with active mcrA abundance but negatively correlated with Eh. The N₂O flux rate was significantly and positively correlated with present and active nirS abundance and positively correlated with soil Eh. Thus, we demonstrated that active gene abundance, such as of mcrA for CH₄ and nirS for N₂O, reflects the contradictory relationship between CH₄ and N₂O emissions regulated by soil Eh in acidic paddy soils.     

Tillage system affects fertilizer-induced nitrous oxide emissions

Since the development of effective N₂O mitigation options is a key challenge for future agricultural practice, we studied the interactive effect of tillage systems on fertilizer-derived N₂O emissions and the abundance of microbial communities involved in N₂O production and reduction. Soil samples from 0–10 cm and 10–20 cm depth of reduced tillage and ploughed plots were incubated with dairy slurry (SL) and manure compost (MC) in comparison with calcium ammonium nitrate (CAN) and an unfertilized control (ZERO) for 42 days. N₂O and CO₂ fluxes, ammonium, nitrate, dissolved organic C, and functional gene abundances (16S rRNA gene, nirK, nirS, nosZ, bacterial and archaeal amoA) were regularly monitored. Averaged across all soil samples, N₂O emissions decreased in the order CAN and SL (CAN?=?748.8?±?206.3, SL?=?489.4?±?107.2 μg kg^?1) followed by MC (284.2?±?67.3 μg kg^?1) and ZERO (29.1?±?5.9 μg kg^?1). Highest cumulative N₂O emissions were found in 10–20 cm of the reduced tilled soil in CAN and SL. N₂O fluxes were assigned to ammonium as source in CAN and SL and correlated positively to bacterial amoA abundances. Additionally, nosZ abundances correlated negatively to N₂O fluxes in the organic fertilizer treatments. Soils showed a gradient in soil organic C, 16S rRNA, nirK, and nosZ with greater amounts in the 0–10 than 10–20 cm layer. Abundances of bacterial and archaeal amoA were higher in reduced tilled soil compared to ploughed soils. The study highlights that tillage system induced biophysicochemical stratification impacts net N₂O emissions within the soil profile according to N and C species added during fertilization.     

Nitrous oxide (N<Subscript>2</Subscript>O)-reducing denitrifier-inoculated organic fertilizer mitigates N<Subscript>2</Subscript>O emissions from agricultural soils

The only known sink for nitrous oxide (N₂O) is biochemical reduction to dinitrogen (N₂) by N₂O reductase (N₂OR). We hypothesized that the application of N₂O-reducing denitrifier-inoculated organic fertilizer could enhance soil N₂O consumption while the disruption of nosZ genes could result in inactivation of N₂O consumption. To test such hypotheses, a denitrifier-inoculated granular organic fertilizer was applied to both soil microcosms and fields. Of 41 denitrifier strains, 38 generated ³⁰N₂ in the end products of denitrification (³⁰N₂ and ⁴⁶N₂O) after the addition of Na¹⁵NO₃ in culture condition, indicating their high N₂O reductase activities. Of these 41 strains, 18 were screened in soil microcosms after their inoculation into the organic fertilizer, most of which were affiliated with Azospirillum and Herbaspirillum. These 18 strains were nutritionally starved to improve their survival in soil, and 14 starved and/or non-starved strains significantly decreased N₂O emissions in soil microcosms. However, the N₂O emission had not been decreased in soil microcosms after inoculating with a nosZ gene-disruptive strain, suggesting that N₂O reductase activity might be essential for N₂O consumption. Although the decrease of N₂O was not significant at field scales, the application of organic fertilizer inoculated with Azospirillum sp. TSH100 and Herbaspirillum sp. UKPF54 had decreased the N₂O emissions by 36.7% in Fluvisol and 23.4% in Andosol in 2014, but by 21.6% in Andosol in 2015 (H. sp. UKPF54 only). These results suggest that the application of N₂O-reducing denitrifier-inoculated organic fertilizer may enhance N₂O consumption or decrease N₂O emissions in agricultural soils.     

The effects of silicon fertilizer on denitrification potential and associated genes abundance in paddy soil

This study evaluated the effect of silicate fertilizer on denitrification and associated gene abundance in a paddy soil. A consecutive trial from 2013 to 2015 was conducted including the following treatments: control (CK), mineral fertilizer (NPK), NPK plus sodium metasilicate (NPK + MSF), and NPK plus slag-based silicate fertilizer (NPK + SSF). Real-time quantitative PCR (qPCR) was used to analyze the abundances of nirS, nirK, and nosZ genes. Potential N₂O emissions and ammonium and nitrate concentrations were related to the nirS and nirK gene abundance. Compared with the NPK treatments, the addition of a Si fertilizer decreased N₂O emission rates and denitrification potential by 32.4–66.6 and 22.0–59.2%, respectively, which were probably related to increased rice productivity, soil Fe availability, and soil N depletion. The abundances of nirS and nirK genes were decreased by 17.7–35.8% and 21.1–43.5% with addition of silicate fertilizers, respectively. Rates of total N₂O and N₂O from denitrification (DeN₂O) emission were positively correlated with the nirS and nirK gene abundance. Nitrate, exchangeable NH₄ ⁺, and Fe concentrations were the main factors regulating the nirS and nirK gene abundance. Silicate fertilization during rice growth may serve as an effective approach to decreasing N₂O emissions.     

The effects of different irrigation regimes on nitrous oxide emissions and influencing factors in greenhouse tomato fields

Purpose

Intensive agricultural practices have enhanced problems associated with the competing use of limited water resources. Nitrous oxide (N₂O) is a major contributor to global warming. It is important for researchers to ascertain the relationship between irrigation and soil N₂O emissions in order to identify mitigation strategies to reduce nitrous oxide emissions. Different irrigation amounts affect soil water dynamics and nitrogen turnover. The effect of three lower limits of irrigation on soil N₂O emissions, influencing factors, and abundance of genes involved in nitrification and denitrification were investigated in tomato irrigated in a greenhouse.

Materials and methods

Observations were performed between April and August 2015 in a long-term irrigated field subjected to different lower limits of irrigation: 20 kPa (D₂₀), 30 kPa (D₃₀), and 40 kPa (D₄₀) from greenhouse soil during the tomato crop season. Soil N₂O fluxes were monitored using the static chamber-gas chromatograph method. Copy numbers of genes were determined using the real-time quantitative polymerase chain reaction (real-time PCR) technique. Characteristics of soil N₂O emissions were analyzed, and differences between irrigation regimes were determined. The effects of influencing factors on soil N₂O emissions were analyzed, including soil temperature, soil moisture, soil pH, and soil mineral nitrogen, as well as changes in the abundance of soil ammonia-oxidizing bacteria (AOB) and ammonia-oxidizing archaea (AOA) based on amoA genes and denitrifier genes (nosZ, nirK, and cnorB).

Results and discussion

Our results showed that peaks in N₂O emissions occurred 1–5 days after each irrigation. During the whole tomato growth period, soil N₂O fluxes were lowest under D₃₀ treatment compared with those under D₂₀ and D₄₀ treatments. Soil NO₃ ^?-N concentrations were significantly higher than NH₄ ⁺-N concentrations. Soil N₂O fluxes were significantly related to soil moisture, NH₄ ⁺-N concentrations (P < 0.01), soil pH, and AOA copy numbers (P < 0.05). There was no consistent correlation between soil N₂O emissions, soil temperature, and soil NO₃ ^?-N concentrations. Different irrigation regimes significantly affected AOA copy numbers but did not affect the expression of other genes. AOA copy numbers were higher than those of AOB. Soil N₂O fluxes significantly affected the AOA copy numbers and potential nitrification rates (P < 0.05).

Conclusions

Soil moisture, pH, and NH₄ ⁺-N concentration were important factors affecting soil N₂O emissions. Compared with other genes associated with nitrification and denitrification, AOA plays an important role in N₂O emissions from greenhouse soils. Selecting a lower limit of irrigation of 30 kPa could effectively reduce N₂O emissions from vegetable soils.

     

Predicting soil loss in central and south Italy with a single USLE-MM model

Purpose

The USLE-MM estimates event normalized plot soil loss, A_e,N, by an erosivity term given by the runoff coefficient, Q_R, times the single-storm erosion index, EI₃₀, raised to an exponent b₁?>?1. This modeling scheme is based on an expected power relationship, with an exponent greater than one, between event sediment concentration, C_e, and the EI₃₀/P_e (P_e = rainfall depth) term. In this investigation, carried out at the three experimental sites of Bagnara, Masse, and Sparacia, in Italy; the soundness of the USLE-MM scheme was tested.

Materials and methods

A total of 1192 (A_e,N, Q_REI₃₀) data pairs were used to parameterize the model both locally and considering all sites simultaneously. The performances of the fitted models were established by considering all erosive events and also by distinguishing between events of different severity.

Results and discussion

The b₁ exponent varied widely among the three sites (1.05–1.44) but using a common exponent (1.18) for these sites was possible. The A_e,N prediction accuracy increased in the passage from the smallest erosion events (A_e,N?≤?1 Mg ha^?1, median error =?3.35) to the largest ones (A_e,N?>?10 Mg ha^?1, median error =?1.72). The Q_REI₃₀ term was found to be usable to predict both A_e,N and the expected maximum uncertainty of this prediction. Soil erodibility was found to be mainly controlled by the largest erosion events.

Conclusions

Development of a single USLE-MM model appears possible. Sampling other sites is advisable to develop a single USLE-MM model for a general use.

     

Contrasting response of two grassland soils to N addition and moisture levels: N<Subscript>2</Subscript>O emission and functional gene abundance

Purpose

Nitrification and denitrification processes dominate nitrous oxide (N₂O) emission in grassland ecosystems, but their relative contribution as well as the abiotic factors are still not well understood.

Materials and methods

Two grassland soils from Duolun in Inner Mongolia, China, and Canterbury in New Zealand were used to quantitatively compare N₂O production and the abundance of bacterial and archaeal amoA, denitrifying nirK and nirS genes in response to N additions (0 and 100 μg NH₄ ⁺–N g^?1 dry soil) and two soil moisture levels (40 and 80 % water holding capacity) using microcosms.

Results and discussion

Soil moisture rather than N availability significantly increased the nitrification rate in the Duolun soil but not in the Canterbury soil. Moreover, N addition promoted denitrification enzyme activities in the Canterbury soil but not in the Duolun soil. The abundance of bacterial and archaeal amoA genes significantly increased as soil moisture increased in the Duolun soil, whereas in the Canterbury soil, only the abundance of bacterial amoA gene increased. The increase in N₂O flux induced by N addition was significantly greater in the Duolun soil than in the Canterbury soil, suggesting that nitrification may have a dominant role in N₂O emission for the Duolun soil, while denitrification for the Canterbury soil.

Conclusions

Microbial processes controlling N₂O emission differed in grassland soils, thus providing important baseline data in terms of global change.

     

Nitrogen transformation rates and N<Subscript>2</Subscript>O producing pathways in two pasture soils

Purpose

Better understanding of N transformations and the regulation of N₂O-related N transformation processes in pasture soil contributes significantly to N fertilizer management and development of targeted mitigation strategies.

Materials and methods

¹⁵N tracer technique combined with acetylene (C₂H₂) method was used to measure gross N transformation rates and to distinguish pathways of N₂O production in two Australian pasture soils. The soils were collected from Glenormiston (GN) and Terang (TR), Victoria, Australia, and incubated at a soil moisture content of 60% water-filled pore space (WFPS) and at temperature of 20 °C.

Results and discussion

Two tested pasture soils were characterized by high mineralization and immobilization turnover. The average gross N nitrification rate (n_tot) was 7.28 mg N kg^?1 day^?1 in TR soil () and 5.79 mg N kg^?1 day^?1 in GN soil. Heterotrophic nitrification rates (n_h), which accounting for 50.8 and 41.9% of n_tot, and 23.4 and 30.1% of N₂O emissions in GN and TR soils, respectively, played a role similar with autotrophic nitrification in total nitrification and N₂O emission. Denitrification rates in two pasture soils were as low as 0.003–0.004 mg N kg^?1 day^?1 under selected conditions but contributed more than 30% of N₂O emissions.

Conclusions

Results demonstrated that two tested pasture soils were characterized by fast N transformation rates of mineralization, immobilization, and nitrification. Heterotrophic nitrification could be an important NO₃^?–N production transformation process in studied pasture soils. Except for autotrophic nitrification, roles of heterotrophic nitrification and denitrification in N₂O emission in two pasture soils should be considered when developing mitigation strategies.

     

Bacterivore nematodes stimulate soil gross N transformation rates depending on their species

We conducted a microcosm experiment with soil being sterilized, reinoculated with native microbial community and subsequently manipulated the bacterivorous nematodes, including three treatments: without (CK) or with introducing one species of the two bacterivores characterized with different body size but similar c-p (colonizer-persister) value (Rhabditis intermedia and Protorhabditis oxyuroides, accounted for 6 and 59% of bacterivores in initially undisturbed soil, respectively). We monitored the N₂O and CO₂ emissions, soil properties, and especially quantified gross N transformation rates using ¹⁵N tracing technique after the 50 days incubation. No significant differences were observed on soil NH₄ ⁺ and NO₃ ^? concentrations between the CK and two bacterivores, but this was not the case for gross N transformation rates. In comparison to CK, R. intermedia did not affect soil N transformation rates, while P. oxyuroides significantly increased the rates of mineralization of organic N to NH₄ ⁺, oxidation of NH₄ ⁺ to NO₃ ^?, immobilization of NO₃ ^? to organic N and dissimilatory NO₃ ^? reduction to NH₄ ⁺. Furthermore, the mean residence time of NH₄ ⁺ and NO₃ ^? pool was greatly lowered by P. oxyuroides, suggesting it stimulated soil N turnover. Such stimulatory effect was unrelated to the changes in abundance of bacteria and ammonia-oxidizing bacteria (AOB). In contrast to CK, only P. oxyuroides significantly promoted soil N₂O and CO₂ emissions. Noticeably, bacterivores increased the mineralization of recalcitrant organic N but decreased soil δ¹³C_-TOC and δ¹⁵N_-TN values, in particular for P. oxyuroides. Combining trait-based approach and isotope-based analysis showed high potential in moving forward to a mechanistic understanding of bacterivore-mediated N cycling.     

Inhibition of nitrification to mitigate nitrate leaching and nitrous oxide emissions in grazed grassland: a review

Purpose

Climate change is arguably the biggest environmental challenge facing humanity today. Livestock production systems are a major source of greenhouse gases that contribute to climate change. Nitrous oxide (N₂O) is a potent greenhouse gas with a long-term global warming potential 298 times that of carbon dioxide (CO₂). Nitrate (NO₃ ^?) leaching from soil causes water contamination, and this is a major environmental issue worldwide. Agriculture is identified as the dominant source for NO₃ ^? in surface and ground waters. In grazed grassland systems where animals graze outdoor pastures, most of the N₂O and NO₃ ^? are from nitrogen (N) returned to the soil in the excreta of the grazing animal, particularly the urine. This paper reviews published literature on the use of nitrification inhibitors (NI) to treat grazed pasture soils to mitigate NO₃ ^? leaching and N₂O emissions.

Materials and methods

This paper provides a review on: ammonia oxidisers, including ammonia oxidising bacteria (AOB) and ammonia oxidising archaea (AOA), that are responsible for ammonia oxidation in the urine patch areas of grazed pastures; the effectiveness of NIs, such as dicyandiamide (DCD) and 3,4-dimethylpyrazole phosphate (DMPP), in inhibiting the growth and activity of ammonia oxidisers; the efficacy of DCD and DMPP in reducing NO₃ ^? leaching and N₂O emissions in grazed pastures; additional benefits of using NI in grazed pasture, including increased pasture production, decreased cation leaching and decreased NO₃ ^? concentrations in plants; and major factors that may affect the efficacy of NIs.

Results and discussion

Research from a number of laboratory and field studies have conclusively demonstrated that treating grazed pasture soils with a NI, such as DCD, is an effective means of reducing NO₃ ^? leaching and N₂O emissions from grazed livestock production systems. Results show that N₂O emissions from animal urine-N can be reduced by an average of 57 % and NO₃ ^? leaching from animal urine patches can be reduced by 30 to 50 %. The NI technology has been shown to be effective under a wide range of soil and environmental conditions. The NI technology also provides other benefits, including increased pasture production, reduced cation (Ca²⁺, Mg²⁺ and K⁺) leaching and reduced NO₃ ^? concentration in pasture plants which would reduce the risk of NO₃ ^? poisoning for the animal.

Conclusions

The use of NIs such as DCD to treat grazed pasture soil is a scientifically sound and practically viable technology that can effectively mitigate NO₃ ^? leaching and N₂O emissions in grazed livestock production systems.

     

Responses of soil nitrous oxide production and abundances and composition of associated microbial communities to nitrogen and water amendment

Soil moisture and nitrogen (N) are two important factors influencing N₂O emissions and the growth of microorganisms. Here, we carried out a microcosm experiment to evaluate effects of soil moisture level and N fertilizer type on N₂O emissions and abundances and composition of associated microbial communities in the two typical arable soils. The abundances and community composition of functional microbes involved in nitrification and denitrification were determined via quantitative PCR (qPCR) and terminal restriction length fragment polymorphism (T-RFLP), respectively. Results showed that N₂O production was higher at 90% water-filled pore (WFPS) than at 50% WFPS. The N₂O emissions in the two soils amended with ammonium were higher than those amended with nitrate, especially at relatively high moisture level. In both soils, increased soil moisture stimulated the growth of ammonia-oxidizing bacteria (AOB) and nitrite reducer (nirK). Ammonium fertilizer treatment increased the population size of AOB and nirK genes in the alluvial soil, while reduced the abundances of ammonia-oxidizing archaea (AOA) and denitrifiers (nirK and nosZ) in the red soil. Nitrate addition had a negative effect on AOA abundance in the red soil. Total N₂O emissions were positively correlated to AOB abundance, but not to other functional genes in the two soils. Changed soil moisture significantly affected AOA rather than AOB community composition in both soils. The way and extent of N fertilizers impacted on nitrifier and denitrifier community composition varied with N form and soil type. These results indicate that N₂O emissions and the succession of nitrifying and denitrifying communities are selectively affected by soil moisture and N fertilizer form in the two contrasting types of soil.     

Changes in CH<Subscript>4</Subscript> production during different stages of litter decomposition under inundation and N addition

Purpose

Our aim was to examine linkages between mass loss, chemical transformation and CH₄ production during decomposition of leaf litters submerged under water. We hypothesised that (i) labile leaf litters would fuel a rapid, high rate of methane (CH₄) production and that recalcitrant litters would fuel long-lasting but lower emissions, (ii) leaf litters experiencing a greater alteration to chemical properties would stimulate increased CH₄ production and (iii) nitrogen (N) addition would increase CH₄ emissions.

Materials and methods

Litters from six plant species were collected from a riparian ecosystem adjacent to Wyaralong Dam, located in Queensland, Australia, i.e., Lophostemon confertus, Cynodon dactylon, Heteropogon contortus, Chamaecrista rotundifolia, Chrysocephalum apiculatum and Imperata cylindrica. We evaluated the rate of mass loss and CH₄ emissions for 122 days of incubation in inundated microcosms with and without N addition. We quantified the chemical changes in the decomposing litters with ¹³ C-cross polarization and magic angle spinning (CPMAS) nuclear magnetic resonance (NMR) spectrum.

Results and discussion

The inundation treatment of plant litters significantly affected decomposition rates. All litters decomposed in either inundated or aerobic microcosms were quite distinct with regard to the NMR spectra of their initial litters. N addition altered the NMR spectra under both inundation and aerobic conditions. The N treatment only marginally influenced the decomposition rates of I. cylindrica and C. apiculatum litters. The diurnal patterns of CH₄ production in the H. contortus, C. rotundifolia and C. apiculatum litters under inundation incubation could be expressed as one-humped curves, with the peak value dependent on litter species and N treatment. N addition stimulated CH₄ emission by C. rotundifolia and C. apiculatum litters and inhibited CH₄ emission from microcosms containing the litters of the three gramineous species, i.e., I. cylindrica, C. dactylon and H. contortus.

Conclusions

Our results provide evidence that labile leaf litters could fuel a rapid, high rate of CH₄ production and that recalcitrant litters fuelled a lower CH₄ emission. We did not find that leaf litters with altered chemical properties stimulated increased CH₄ production. We also found that N addition was able to increase CH₄ emissions, but this effect was dependent on the litter species.

     

Measuring the bioavailability of polychlorinated biphenyls to earthworms in soil enriched with biochar or activated carbon using triolein-embedded cellulose acetate membrane

Purpose

Polychlorinated biphenyls (PCBs) are persistent soil contaminants that resist biodegradation and present serious risks to living organisms. The presence of biochar in soils can lower the availability of PCBs to biota. In this study, the effect of biochar enrichment in soils on bioaccumulation of PCBs was investigated.

Materials and methods

We applied two types of biochar including pine needle biochar (PC) and wheat straw biochar (WC), and an activated carbon (AC) to soil (2 % w/w) and employed two alternative methods to quantified rates of bioaccumulation: a living bioassay (using earthworm, Eisenia fetida, as a model organism) and a triolein-embedded cellulose acetate membrane (TECAM).

Results and discussion

Our results show that the application of biochar or AC greatly reduced the uptake of PCBs (particularly less-chlorinated PCBs) by earthworms (the reduction in total PCBs concentration was up to 40.0 and 49.0 % for PC and WC treatments, while 71.6 % for AC application). We found that the bioaccumulation factors (BAFs) for PCBs in the earthworms in biochar/AC-enriched soils were strongly correlated with O:C ratio of the biochar/AC (R ²?=?0.998, p?<?0.05). We observed that BAFs increased at log K _OW below 6.3 and decreased at log K _OW values greater than 6.3. We demonstrated that the concentration of PCBs in TECAM membranes were positively correlated with the concentration of PCBs earthworms in soil.

Conclusions

TECAM offers an efficient and cost-effective method for predicting the bioavailability of PCBs in field-contaminated soils undergoing sorbent-based remediation.

     

<Emphasis Type="Italic">Trichoderma</Emphasis> improves the growth of <Emphasis Type="Italic">Leymus chinensis</Emphasis>

Bio-fertilizer application has been proposed as a strategy for enhancing soil fertility, regulating soil microflora composition, and improving crop yields, and it has been widely applied in the agricultural yields. However, the application of bio-fertilizer in grassland has been poorly studied. We conducted in situ and pot experiments to investigate the practical effects of different fertilization regimes on Leymus chinensis growth, with a focus on the potential microecological mechanisms underlying the responses of soil microbial composition. L. chinensis biomass was significantly (P?<?0.05) increased by treatment with 6000 kg ha^?1 of Trichoderma bio-fertilizer compared with other treatments. We found a positive (R² =?0.6274, P <?0.001) correlation between bacterial alpha diversity and L. chinensis biomass. Hierarchical cluster analysis and nonmetric multidimensional scaling (NMDS) revealed that soil bacterial and fungal community compositions were all separated according to the fertilization regime used. The relative abundance of the most beneficial genera in bio-fertilizer (BOF) (6000 kg ha^?1Trichoderma bio-fertilizer) was significantly higher than in organic fertilizer (OF) (6000 kg ha^?1 organic fertilizer) or in CK (non-amend fertilizer), there the potential pathogenic genera were reduced. There were significant negative (P?<?0.05) correlations between L. chinensis biomass and the relative abundance of several potential pathogenic genera. However, the relative abundance of most beneficial genera were significantly (P?<?0.05) positively correlated with L. chinensis biomass. Soil properties had different effects on these beneficial and on these pathogenic genera, further influencing L. chinensis biomass.     

Straw amendment to paddy soil stimulates denitrification but biochar amendment promotes anaerobic ammonia oxidation

Purpose

Organic matter amendment is usually used to improve soil physicochemical properties and to sequester carbon for counteracting climate change. There is no doubt that such amendment will change microbial activity and soil nitrogen transformation processes. However, the effects of straw and biochar amendment on anammox and denitrification activity and on community structure in paddy soil are unclear.

Materials and methods

We conducted a 30-day pot experiment using rice straw and rice straw biochar to deepen our understanding about the activity, microbial abundance, and community structure associated with soil nitrogen cycling during rice growth.

Results and discussion

Regarding activity, anammox contributed 3.1–8.1% of N₂ production and denitrification contributed 91.9–96.9% of N₂ production; straw amendment resulted in the highest denitrification rate (38.9 nmol N g^?1 h^?1), while biochar amendment resulted in the highest anammox rate (1.60 nmol N g^?1 h^?1). Both straw and biochar amendments significantly increased the hzsB and nosZ gene abundance (p < 0.05). Straw amendment showed the highest nosZ gene abundance, while biochar amendment showed the highest hzsB gene abundance. Phylogenetic analysis of the anammox bacteria 16S rRNA genes indicated that Candidatus Brocadia and Kuenenia were the dominant genera detected in all treatments.

Conclusions

Straw and biochar amendments have different influences on anaerobic ammonia oxidation and denitrification within paddy soil. Our results suggested that the changes in denitrification and anammox rates in the biochar and straw treatments were mainly linked to functional gene abundance rather than microbial community structure and that denitrification played the more major role in N₂ production in paddy soil.

     

Nitrogen Removal and N<Subscript>2</Subscript>O Emission During Low Carbon Wastewater Treatment Using the Multiple A/O Process

With the organic carbon of acetate (SBR-A) and propionate (SBR-P), the effect of organic carbon sources on nitrogen removal and nitrous oxide (N₂O) emission in the multiple anoxic and aerobic process was investigated. The nitrogen removal percentages in SBR-A and SBR-P reactor were both 72%, and the phosphate removal percentages were 97 and 85.4%, respectively. During nitrification, both the NH₄ ⁺-N oxidation rate in the SBR-A and SBR-P had a small change without the influence of the addition of nitrite nitrogen (NO₂ ^?-N). With the addition of 10 mg/L NO₂ ^?-N, the nitrate nitrogen (NO₃ ^?-N) production rate, N₂O accumulation rate and emission factor had increased. At the same time, the N₂O emission factor of SBR-A and SBR-P reactors increased from 2.13 and 0.87% to 4.66 and 2.08%, respectively. During exogenous denitrification, when nitrite was used as electron acceptor, the N₂O emission factors were 34.1 and 8.6 times more than those of NO₃ ^?-N as electron acceptor in SBR-A and SBR-P. During endogenous denitrification with NO₂ ^?-N as electron acceptor, the accumulation rate and emission factor of N₂O were higher than those of NO₃ ^?-N as electron acceptor. High-throughput sequencing test showed that the dominant bacteria were Proteobacteria and Bacteroidetes in both reactors at the phylum level, while the main denitrification functional bacteria were Thauera sp., Zoogloea sp. and Dechloromonas sp. at the genus level.     

Effects of cover crop in an apple orchard on microbial community composition,networks, and potential genes involved with degradation of crop residues in soil

Changes in the soil microbial communities and networks were monitored after planting the cover crop for 9 years. The field experiment included plots with a cover crop and without a cover crop but with weed control, and two subplots with or without chemical fertilizer (192 kg N ha^?1, 108 kg P₂O₅ ha^?1, and 168 kg K₂O ha^?1 each year). After applying the cover crop and chemical fertilizer for 9 years, the composition and activity of bacterial and fungal communities changed significantly (p?<?0.05), with the cover crop had greater effects than the chemical fertilizer on the composition of the soil microbial community. The relative abundances of 22 selected genera (in Firmicutes and Bacteroidetes) and two selected classes (Ascomycota) related to cover crop residue degradation increased significantly in the presence of the cover crop (p?<?0.05). Network analysis showed that the cover crop decreased the number of positive links between bacterial and fungal taxa by 25.33%, and increased the negative links by 22.89%. The positive links among bacterial taxa increased by 16.63% with the cover crop, mainly among Proteobacteria (increase of 39), Firmicutes (16), Actinobacteria (five), and Bacteroidetes (10). The links among fungal taxa were less than among bacterial taxa and were not significantly affected by cover crop. Taxa such as Thaumarchaeota, unidentified_Nitrospiraceae, unidentified_Nitrosomonadaceae, Faecalibacterium, Coprococcus_3, and Ruminococcaceae_NK4A214_group dominated the network without the cover crop but they were not dominant with the cover crop. The relative abundances of potential genes involved with the degradation of cellulose, hemicellulose, and cello-oligosaccharides increased significantly with the cover crop. Therefore, the SOC and TN contents were enhanced by the cover crop with the increase of the soil enzyme activities. Thus, the apple yield was improved by the cover crop.     

Effect of biochar and nitrapyrin on nitrous oxide and nitric oxide emissions from a sandy loam soil cropped to maize

A field experiment was conducted to evaluate the combined or individual effects of biochar and nitrapyrin (a nitrification inhibitor) on N₂O and NO emissions from a sandy loam soil cropped to maize. The study included nine treatments: addition of urea alone or combined with nitrapyrin to soils that had been amended with biochar at 0, 3, 6, and 12 t ha^?1 in the preceding year, and a control without the addition of N fertilizer. Peaks in N₂O and NO flux occurred simultaneously following fertilizer application and intense rainfall events, and the peak of NO flux was much higher than that of N₂O following application of basal fertilizer. Mean emission ratios of NO/N₂O ranged from 1.11 to 1.72, suggesting that N₂O was primarily derived from nitrification. Cumulative N₂O and NO emissions were 1.00 kg N₂O-N ha^?1 and 1.39 kg NO-N ha^?1 in the N treatment, respectively, decreasing to 0.81–0.85 kg N₂O-N ha^?1 and 1.31–1.35 kg NO-N ha^?1 in the biochar amended soils, respectively, while there was no significant difference among the treatments. NO emissions were significantly lower in the nitrapyrin treatments than in the N fertilization-alone treatments (P?<?0.05), but there was no effect on N₂O emissions. Neither biochar nor nitrapyrin amendment affected maize yield or N uptake. Overall, our results showed that biochar amendment in the preceding year had little effect on N₂O and NO emissions in the following year, while the nitrapyrin decreased NO, but not N₂O emissions, probably due to suppression of denitrification caused by the low soil moisture content.