A leaf rust resistance gene, different from Lr34, associated with leaf tip necrosis in wheat

The gene Lr34 has contributed to durable resistance to leaf rust caused by Puccinia triticina in wheat worldwide. The closely associated leaf tip necrosis is generally used as the gene's marker. Lr34 has been postulated in many Indian bread wheat cultivars including ‘C 306’, based on the associated leaf tip necrosis and a few other field and glasshouse observations. The present study showed monogenic control of adult‐plant resistance in ‘C 306’ to leaf rust pathotype 77‐5 (121R63‐1). The F₂ segregation in the crosses between ‘C 306’ and the two known carriers of Lr34, ‘Line 897’ and ‘Jupateco 73’‘R’ fitted a digenic ratio. The F₃ families derived from the susceptible F₂ segregants were true breeding for susceptibility, proving the absence of Lr34 in ‘C 306’. The cross between ‘Line 897’ and ‘Jupateco 73’‘R’ did not segregate for susceptibility. Resistance in the cross ‘Agra Local’ (susceptible) × ‘C 306’ was associated with leaf tip necrosis, showing that the leaf rust resistance gene in ‘C 306’ was associated with leaf tip necrosis, but was different from Lr34. This gene is being temporarily designated as Lr‘C 306’. Hence, leaf tip necrosis cannot be considered as an exclusive marker for selecting Lr34 in wheat improvement.     

Genetics of leaf rust resistance in three Americano landrace-derived wheat cultivars from Uruguay

A genetic analysis of the landrace‐derived wheat accessions Americano 25e, Americano 26n, and Americano 44d, from Uruguay was conducted to identify the leaf rust resistance genes present in these early wheat cultivars. The three cultivars were crossed with the leaf rust susceptible cultivar ‘Thatcher’ and approximately 80 backcross (BC1) F₂ families were derived for each cross. The BC1F₂ families and selected BC1F₄ lines were tested for seedling and adult plant leaf rust resistance with selected isolates of leaf rust, Puccinia triticina. The segregation and infection type data indicated that Americano 25e had seedling resistance genes Lr3, Lr16, an additional unidentified seedling gene, and one adult plant resistance gene that was neither Lr12 nor Lr13, and did not phenotypically resemble Lr34. Americano 26n was postulated to have genes Lr11, Lr12, Lr13, and Lr14a. Americano 44d appeared to have two possibly unique adult plant leaf rust resistance genes.     

Identification of a molecular marker linked to an Agropyron elongatum-derived gene Lr19 for leaf rust resistance in wheat

The leaf rust resistance gene Lr19, transferred from Agropyron elongatum into wheat (Triticum aestivum L.) imparts resistance to all pathotypes of leaf rust (Puccinia recondita f.sp. tritici) in South‐east Asia. A segregating F₂ population from a cross between the leaf rust resistant parent ‘HW 2046’ carrying Lr19 and a susceptible parent ‘Agra Local’ was screened in the phytotron against a virulent pathotype 77‐5 of leaf rust with the objective of identifying the molecular markers linked to Lr19. The gene was first tagged with a randomly amplified polymorphic DNA (RAPD) marker S73₇₂₈. The RAPD marker linked to the gene Lr19 which mapped at 6.4 ± 0.035 cM distance, was converted to a sequence characterized amplified region (SCAR) marker. The SCAR marker (SCS73₇₁₉) was specific to Lr19 and was not amplified in the near‐isogenic lines (NILs) carrying other equally effective alien genes Lr9, Lr28 and Lr32 enabling breeders to pyramid Lr19 with these genes.     

Development and Validation of SCAR Markers Co-Segregating with an Agropyron Elongatum Derived Leaf Rust Resistance Gene Lr24 in Wheat

Summary An Agropyron elongatum-derived leaf rust resistance gene Lr24 located on chromosome 3DL of wheat was tagged with six random amplified polymorphic DNA (RAPD) markers which co-segregated with the gene. The markers were identified in homozygous resistant F₂ plants taken from a population segregating for leaf rust resistance generated from a cross between two near-isogenic lines (NILs) differing only for Lr24. Phenotyping was done by inoculating the plants with pathotype 77-5 of Puccinia triticina. To enable gene-specific selection, three RAPD markers (S1302₆₀₉, S1326₆₁₅ and OPAB-1₃₈₈) were successfully converted to polymorphic sequence characterized amplified region (SCAR) markers, amplifying only the critical DNA fragments co-segregating with Lr24. The SCAR markers were validated for specificity to the gene Lr24 in wheat NILs possessing Lr24 in 10 additional genetic backgrounds including the Thatcher NIL, but not to 43 Thatcher NILs possessing designated leaf rust resistance genes other than Lr24. This indicated the potential usefulness of these SCAR markers in marker assisted selection (MAS) and for pyramiding leaf rust resistance genes in wheat.     

Genetic analysis of resistance to leaf-rust (Puccinia recondita f. sp. tritici) pathotypes in the durum wheats 'PBW 34' and 'DWL 5023'

Genetic analysis of leaf-rust resistance was conducted on two durum wheats. Triticum durum cvs. ‘PBW 34’ and ‘DWL 5023’ were crossed with the leaf-rust-susceptible durum wheat ‘Malvi Local’. The F₁, F₂ and F₃ generations were tested against leaf-rust pathotypes 1, 77A and 108. In ‘PBW 34’, a single dominant gene was effective against each of the pathotypes 1 and 108, whereas two independently inherited dominant genes were effective against pathotype 77A. In ‘DWL 5023’, two independently inherited dominant genes were operative against pathotypes 1 and 77A, whereas a single dominant gene was identified as being operative against pathotype 108. Allelic tests on F₂ generation and joint segregation analysis on F₃ generation seedlings, suggested that two different genes in each cultivar are effective against these three leaf-rust pathotypes. Cultivar ‘PBW 34’ has Lrd1 and Lrd2 genes whereas Lrd1 and Lrd3 genes are present in ‘DWL 5023’.     

Effect of Lr34 Resistance on Leaf Rust Development, Grain Yield and Baking Quality in Wheat

The protection provided by the leaf rust resistance gene Lr34 against Puccinia recondita f. sp. tritici was studied in the field over two seasons. In leaf-rust inoculated and fungicide-sprayed control plots, yield of RL6058, the ‘Thatcher’ backcross line with Lr34, was compared to that of the susceptible cultivar ‘Thatcher’. Leaf rust severity remained low on RL6058 in both seasons, but was high on ‘Thatcher’. The latent period of wheat leaf rust isolate 3SA132 in flag leaves of RL6058 was 256 h longer than in ‘Thatcher’. The uredinium density on ‘Thatcher’ was 14.4/cm², compared to 3.7/cm² flag leaf surface on RL6058. Leaf rust infection of ‘Thatcher’ reduced the total grain yield per plot by 25.4% and 1,000 kernel mass by 15.6%. Leaf rust caused little or no damage on RL6058 and rusted plots outyielded the control plots by 0.3 %. Seed weight of RL6058 was reduced by 0.7%. Compared to previous greenhouse studies, the adult-plant resistance conferred by Lr34 is more clearly expressed in the field. Evaluation of milling and baking quality characteristics revealed that compared to ‘Thatcher’, RL6058 had a higher flour protein content, but that its milling, dough development and baking properties were inferior.     

‘CPAN 1842’: a new source of adult plant leaf rust resistance in bread wheat

There is worldwide interest in adult plant resistance (APR) because of greater durability of APR to the cereal rusts. Peruvian bread wheat genotype ‘CPAN (Coordinated Project Accession Number) 1842’ (LM 50–53) has shown leaf rust resistance in disease screening nurseries since its introduction in 1977. However, it is susceptible at the seedling stage to several Puccinia triticina (Pt) pathotypes including the widely prevalent 77‐5 (121R63‐1) that infects bread wheat. Inheritance studies showed that CPAN 1842 carried a dominant gene for APR to pathotype 77‐5, which was different from Lr12, Lr13, Lr22a, Lr34, Lr35, Lr37, Lr46, Lr48, Lr49 and Lr68, based on the tests of allelism; and from Lr67, based on genotyping with the closely linked SSR marker cfd71. This gene should also be different from Lr22b as the latter is totally ineffective against pathotype 77‐5. CPAN 1842 therefore appears to be a new promising source of leaf rust resistance. Also having resistance to stem rust and stripe rust, this line can contribute to breeding for multiple rust resistances in wheat.     

Identification and molecular mapping of a leaf rust resistance gene in spelt wheat landrace Altgold

Leaf rust, caused by Puccinia triticina, is an important disease for wheat production, both in China and worldwide. In laboratory studies spelt wheat (Triticum aestivum ssp. spelta) landrace Altgold was resistant to P. triticina races THT and PHT and genetic analysis indicated that it possessed a dominant leaf rust resistance gene, temporarily designated LrAlt. F₆ recombinant inbred lines (RILs) derived from a cross with the susceptible common wheat cultivar Nongda 3338 were used to map LrAlt with SSR markers. The resistance gene was distal to SSR loci Xbarc212, Xwmc382, Xgwm636, and Xwmc407 on the short arm of chromosome 2A. The closest markers Xbarc212 and Xwmc382 which co-segregated were 1.8 cM away from LrAlt. The relationships of LrAlt and other wheat leaf rust resistance genes located on the short arm of chromosome 2A were discussed, suggesting that LrAlt might be a new leaf rust resistance gene.     

Cytogenetic studies in wheat XIX. Chromosome location and linkage studies of a gene for leaf rust resistance in the Australian cultivar 'Harrier'

Monosomic analysis indicated that a seedling leaf rust resistance gene present in the Australian wheat cultivar ‘Harrier’(tentatively designated LrH) is located on chromosome 2A. LrH segregated independently of the stripe rust resistance gene Yr1 located in the long arm of that chromosome, but failed to recombine with Lr17 located in the short arm. LrH was therefore designated Lr17b and the allele formerly known as Lr17 was redesignated as Lr17a. The genes Lr17b and Lr37 showed close repulsion linkage. Tests of allelism indicated that Lr1 7b is also present in the English wheats ‘Dwarf A’(‘Hobbit Sib’), ‘Maris Fundin’ and ‘Norman’. Virulence for Lr17b occurs in Australia, and pathogenicity studies have also demonstrated virulence in many western European isolates of the leaf rust pathogen. Despite this, it is possible that the gene may be of value in some regions if used in combination with other leaf rust resistance genes.     

Genetic Diversity for Adult Plant Resistance to Leaf Rust (Puccinia recondita) in Near-Isogenic Lines and in Indian Wheats

Variation for adult plant resistance in near-isogenic wheat lines carrying Lrl4b, Lrl4ab and Lr30 in a ‘Thatcher’ background indicated the possible presence of novel adult plant resistance genes effective against the Indian leaf rust population. Sixty-one wheats released for cultivation in India were grown in isolated nurseries. Each nursery was separately inoculated with one of four leaf rust pathotypes which had been selected to aid identification of resistance effective only in the adult plant stage. Seven distinct response groups were recognised and a minimum of six sources of adult plant resistance were postulated. In a group of 14 wheats, resistance was explained on the basis of the seedling response genes that were identified. Similar results for two years with pathotype 77-1 gave support to the reliability of field tests. Adult plant resistance (APR) sources were either race-specific or effective against all pathotypes used. Seedlings of cultivars with APR showed susceptible reactions. The possible presence of Lr34 in Indian wheats and its role in durable leaf rust resistance are discussed.     

Sources of resistance to Indian pathotypes of Puccinia graminis tritici and P. triticina in durum wheat

Stem rust and leaf rust are important diseases affecting durum wheat production in India. Inheritance and extent of diversity in resistance were studied in five durum genotypes, viz. ?B 662', ?ED 2398‐A', ?HG 110', ?IWP 5019' and ?Line 1172? using Pgt pathotypes 40A and 117‐6, and Pt pathotypes 12‐2 and 104‐2. F₂ and F₃ analyses showed that resistance was conferred by one or two genes in each line. In all, four genes for resistance to 40A, and eight each for pathotypes 117‐6 and 12‐2 were identified among the five genotypes, and three for resistance to 104‐2 among B 662, ED 2398‐A and IWP 5019 were indicated by tests of allelism. Although the gene identities are not known, at least some of them should be different from Sr2, Sr7b, Sr8a, Sr8b, Sr9e, Sr9g, Sr11, Sr12, Sr13, Sr14, Sr17, Sr23 and Sr28; and from Lr3, Lr14a, Lr23 and Lr27 + Lr31. These genotypes enrich the diversity of resistance to stem rust and leaf rust for durum wheat improvement.     

利用BSR-Seq定位小麦品种郑麦103抗条锈病基因YrZM103

郑麦103是一个高抗条锈病的小麦新品种,为明确其携带的抗病基因,用郑麦103与感条锈病品种农大399杂交构建分离群体,用条锈菌CYR32、CYR33和CRY34(V26)混合菌系进行田间接种和成株期抗性鉴定,对214个F2:3家系的条锈病抗性进行遗传分析,初步确定郑麦103的抗条锈性由单个主效基因控制,定名为Yr ZM103。通过BSR-Seq技术开发了6个与Yr ZM103紧密连锁的分子标记,将Yr ZM103定位于染色体臂7BL分子标记ZM215和ZM221之间,遗传距离分别为11.8 c M和6.9 c M。利用7BL染色体上与其他已知抗条锈病基因紧密连锁的分子标记进行比较作图,发现Yr ZM103是不同于7BL末端其他抗条锈病基因的新基因。     

Quantitative trait loci mapping of adult‐plant resistance to leaf rust in a Fundulea 900 × ‘Thatcher’ wheat cross

Wheat leaf rust (LR), caused by the obligate biotrophic fungus Puccinia triticina (Pt), is a destructive foliar disease of common wheat (Triticum aestivum L.) worldwide. The most effective, economic means to control the disease is resistant cultivars. The Romanian wheat line Fundulea 900 showed high resistance to LR in the field. To identify the basis of resistance to LR in Fundulea 900, a population of 188 F_2:3 lines from the cross Fundulea 900/‘Thatcher’ was phenotyped for LR severity during the 2010–2011, 2011–2012 and 2012–2013 cropping seasons in the field at Baoding, Hebei Province. Bulked segregant analysis and simple sequence repeat markers were used to identify the quantitative trait loci (QTLs) for LR adult‐plant resistance in the population. Three QTLs were detected and designated as QLr.hebau‐1BL, QLr.hebau‐2DS and QLr.hebau‐7DS. Based on the chromosome positions and molecular marker tests, QLr.hebau‐1BL is Lr46, and QLr.hebau‐7DS is Lr34. QLr.hebau‐2DS was derived from ‘Thatcher’ and was close to Lr22. This result suggests that Lr22b may confer residual resistance on field nurseries when challenged with isolates virulent on Lr22b, or another gene linked to Lr22b confers this resistance from ‘Thatcher’. This study confirms the value of Lr34 and Lr46 in breeding for LR resistance in China; the contribution of the QTL to chromosome 2D needs further validation.     

Genetic analysis of resistance to root-lesion nematode (Pratylenchus thornei) in wheat

The inheritance of resistance to root‐lesion nematode was investigated in five synthetic hexaploid wheat lines and two bread wheat lines using a half‐diallel design of F₁ and F₂ crosses. The combining ability of resistance genes in the synthetic hexaploid wheat lines was compared with the performance of the bread wheat line ‘GS50a’, the source of resistance to Pratylenchus thornei used in Australian wheat breeding programmes. Replicated glasshouse trials identified P. thornei resistance as polygenic and additive in gene action. General combining ability (GCA) of the parents was more important than specific combining ability (SCA) effects in the inheritance of P. thornei resistance in both F₁ and F₂ populations. The synthetic hexaploid wheat line ‘CPI133872’ was identified as the best general combiner, however, all five synthetic hexaploid wheat lines possessed better GCA than ‘GS50a’ The synthetic hexaploid wheat lines contain novel sources of P. thornei resistance that will provide alternative and more effective sources of resistance to be utilized in wheat breeding programmes.     

Resistance to leaf rust in cultivars of bread wheat and durum wheat grown in Spain

A set of bread wheat and durum wheat cultivars adapted to Spanish conditions was tested for resistance against leaf rust caused by different pathotypes of Puccinia triticina in field trials and in growth chamber studies. Lower levels of resistance were found in durum wheat than in bread wheat. The most frequent Lr genes found in bread wheat were Lr1, Lr10, Lr13, Lr20, Lr26 and Lr28. In durum wheat, additional resistance genes that differed from the known Lr genes were identified. The level of partial resistance to leaf rust was in general low, although significant levels were identified in some bread wheat and durum wheat cultivars.     

The Transfer of Thinopyrum-Derived Leaf-rust Resistance from Common Wheat to Durum Wheat.

The leaf rust resistance gene on chromosome 7AL of ‘Chinese Spring’ transfer no. 12 derived from Thinopyrum ponticum, was transferred to durum wheat by standard backcrossing. In ‘Agatha’ and ‘Indis’ a leaf rust resistance gene from Thinopyrum ponticum and Thinopyrum ponticum respectively, is found on a translocated segment on chromosome arm 7DL. The use of the ‘Langdon’ disomic D-chromosome substitution lines for 7A and 7B resulted in the recovery of tetraploid leaf-rust resistant lines from the crosses with ‘Agatha’ in the B₂F₁ generation. Tetraploid lines carrying the ‘Indis’ translocation segment were recovered in the B₂F₂ generation. The F₂ segregation ratios for rust resistance after selfing or back-crossing generally fitted a 1: 1 ratio indicating non-transmission of the translocation segments in the male gametes. Homozygous resistant plants were not obtained. Meiotic instability was observed in 28 chromosome B₂ F₂ derivatives of the crosses between ‘Chinese Spring’ transfer no. 12 and durum wheat.     

Recessive genes controlling resistance to Helminthosporium leaf blight in synthetic hexaploid wheat

A study was conducted under controlled environment conditions in a phytotron to determine the nature of the inheritance of resistance Helminthosporium leaf blight (HLB) in a synthetic hexaploid wheat line, ‘Chirya‐3’, against the isolate KL‐8 of Bipolaris sorokiniana from the major wheat growing region of India. Crosses were made between two susceptible lines ‘WH 147’ and ‘Chinese Spring’. Analyses of F₁ and F₂ populations of these two crosses (‘WH 147’בChirya‐3’ and ‘Chinese Spring’בChirya‐3’) showed that resistance against the isolate in ‘Chirya‐3’ was governed by two recessive genes functioning in a complementary interaction giving an F₂ segregation pattern of 1 : 15 (resistant : susceptible). The segregation pattern of the resistant F₂ progenies in F₃ families from both crosses confirmed that two homozygous recessive genes were responsible for resistance to the isolate of Bipolaris sorokiniana in the synthetic line ‘Chirya‐3’. It is proposed that the genes be designated as hlbr1 and hlbr2.     

Identification of microsatellite markers for a leaf rust resistance gene introgressed into common wheat from Triticum timopheevii

The tetraploid wheat Triticum timopheevii Zhuk (A^tA^tGG) is known as a source of genes determining resistance to many diseases. An introgressive line 842, with durable resistance to leaf rust was established by crossing T. aestivum cv. ‘Saratovskaya29’ with T. timopheevii ssp. viticulosum and used for mapping leaf rust resistance genes. Molecular analysis of the line 842 with polymorphic microsatellite markers detected introgressions of T. timopheevii into the homoeologous group 2 chromosomes of common wheat. Transloca‐tion breakpoints of introgressed fragments were localized between the markers Xgwm95 and Xgwm817 on chromosome 2A, as well as Xgwm1128 and Xgwm1067 on chromosome 2B. Linkage analysis demonstrated the association of disease resistance at the seedling stage with chromosome 2A. The gene was found to be linked with marker Xgwm817 at a genetic distance of 1.5 cM. The alien leaf rust resistance gene was temporarily designated as lrTt1.     

Evidence of allelism between genes Pm8 and Pm17 and chromosomal location of powdery mildew and leaf rust resistance genes in the common wheat cultivar'Amigo'

TIBL-1RS wheat-rye translocation cultivars utilized in wheat programmes worldwide carry powdery mildew resistance gene Pm8. Cultivar‘Amigo’possesses resistance gene Pm17 on its TIAL-1RS translocated chromosome. To be able to use Pm17efficiently in breeding programmes, this gene was transferred to a TIBL-1RS translocation in line Helami-105, and allelism between Pm8 and Pm17was studied. The progenies of the hybrids in the F₂ generation and F₃ families provided evidence that the two genes are allelic. Genetic studies using monosomic analyses confirmed that in cultivar‘Amigo', Pm17 and leaf rust resistance gene Lr24 are located on a translocated chromosome involving 1 A and 1B, respectively.     

The linkage between the stem rust resistance gene Sr2 and pseudo-black chaff in wheat can be broken

Recessively inherited gene Sr2 has provided the basis of durable resistance to stem rust (caused by Puccinia graminis tritici) in wheat (Triticum aestivum L.) worldwide. The associated earhead and stem melanism or ‘pseudo‐black chaff’ is generally used as a marker for this gene. Sr2 has been postulated in many wheat cultivars of India including ‘Lok 1’, based on associated pseudo‐black chaff in adult plants, and leaf chlorosis in seedlings. However, dominant inheritance of the resistance factor operating in ‘Lok 1’, and a 13 : 3 (resistant : susceptible) F₂ segregation in the ‘Sr2‐line’ (‘Chinese Spring’⁶ × ‘Hope’ 3B) × ‘Lok 1’ cross confirmed that Sr2 was absent in ‘Lok 1’. Susceptible plants with a pseudo‐black chaff phenotype were observed in F₂ populations of ‘Agra Local’ (susceptible) × ‘Lok 1’, and the ‘Sr2‐line’ × ‘Lok 1’ crosses. Most of the F₃ families derived from the susceptible F₂ segregants with pseudo‐black chaff phenotypes were true breeding for the expression of pseudo‐black chaff with susceptibility to stem rust. Thus, linkage of pseudo‐black chaff with Sr2 in wheat can be broken, and hence, caution may be exercised in using pseudo‐black chaff as a marker for selecting Sr2 in breeding programmes.