Spontaneous internal desynchronization of locomotor activity and body temperature rhythms from plasma melatonin rhythm in rats exposed to constant dim light

Background  

We have recently reported that spontaneous internal desynchronization between the locomotor activity rhythm and the melatonin rhythm may occur in rats (30% of tested animals) when they are maintained in constant dim red light (LL_dim) for 60 days. Previous work has also shown that melatonin plays an important role in the modulation of the circadian rhythms of running wheel activity (R_w) and body temperature (T_b). The aim of the present study was to investigate the effect that desynchronization of the melatonin rhythm may have on the coupling and expression of circadian rhythms in R_w and T_b.     

Oxygen limitation and tissue metabolic potential of the African fish Barbus neumayeri : roles of native habitat and acclimatization

Background  

Oxygen availability in aquatic habitats is a major environmental factor influencing the ecology, behaviour, and physiology of fishes. This study evaluates the contribution of source population and hypoxic acclimatization of the African fish, Barbus neumayeri, in determining growth and tissue metabolic enzyme activities. Individuals were collected from two sites differing dramatically in concentration of dissolved oxygen (DO), Rwembaita Swamp (annual average DO 1.35 mgO₂ L^-1) and Inlet Stream West (annual average DO 5.58 mgO₂ L^-1) in Kibale National Park, Uganda, and reciprocally transplanted using a cage experiment in the field, allowing us to maintain individuals under natural conditions of oxygen, food availability, and flow. Fish were maintained under these conditions for four weeks and sampled for growth rate and the activities of phosphofructokinase (PFK), lactate dehydrogenase (LDH), citrate synthase (CS), and cytochrome c oxidase (CCO) in four tissues, liver, heart, brain, and skeletal muscle.     

Heat-tolerant rice cultivars retain grain appearance quality under free-air CO2 enrichment

Background

Heat-tolerant rice cultivars have been developed as a countermeasure to poor grain appearance quality under high temperatures. Recent studies showed that elevated CO₂ concentrations (E-[CO₂]) also reduce grain quality. To determine whether heat-tolerant cultivars also tolerate E-[CO₂], we conducted a free-air CO₂ enrichment (FACE) experiment with 12 rice cultivars differing in heat tolerance.

Results

The percentage of undamaged grains of five standard cultivars (Akitakomachi, Kinuhikari, Koshihikari, Matsuribare, Nipponbare) averaged 61.7% in the ambient [CO₂] (AMB) plot and 51.7% in the FACE plot, whereas that of heat-tolerant cultivars (Eminokizuna, Wa2398, Kanto 257, Toyama 80, Mineharuka, Kanto 259, Saikai 290) averaged 73.5% in AMB and 71.3% in FACE. This resulted in a significant [CO₂] by cultivar interaction. The percentage of white-base or white-back grains increased from 8.4% in AMB to 17.1% in FACE in the sensitive cultivars, but from only 2.1% in AMB to only 4.4% in FACE in the heat-tolerant cultivars.

Conclusion

Heat-tolerant cultivars retained their grain appearance quality at E-[CO₂] under present air temperatures. Further improvements in appearance quality under present conditions will be needed to achieve improvements under E-[CO₂], because E-[CO₂] will likely lower the threshold temperature for heat stress.     

OsSUV3 transgenic rice maintains higher endogenous levels of plant hormones that mitigates adverse effects of salinity and sustains crop productivity

Background

The SUV3 (suppressor of Var 3) gene encodes a DNA and RNA helicase, which is localized in the mitochondria. Plant SUV3 has not yet been characterized in detail. However, the Arabidopsis ortholog of SUV3 (AT4G14790) has been shown to be involved in embryo sac development. Previously, we have reported that rice SUV3 functions as DNA and RNA helicase and provides salinity stress tolerance by maintaining photosynthesis and antioxidant machinery. Here, we report further analysis of the transgenic OsSUV3 rice plants under salt stress.

Findings

The transgenic OsSUV3 overexpressing rice T₁ lines showed significantly higher endogenous content of plant hormones viz., gibberellic acid (GA₃), zeatin (Z) and indole-3-acetic acid (IAA) in leaf, stem and root as compared to wild-type (WT), vector control (VC) and antisense (AS) plants under salt (200 mM NaCl) stress condition. A similar trend of endogenous plant hormones profile was also reflected in the T₂ generation of OsSUV3 transgenic rice under defined parameters and stress condition.

Conclusions

In response to stress, OsSUV3 rice plants maintained plant hormone levels that regulate the expression of several stress-induced genes and reduce adverse effects of salt on plant growth and development and therefore sustains crop productivity.     

Role of GABAB Receptor and L-Arg in GABA-Induced Vasorelaxation in Non-diabetic and Streptozotocin-Induced Diabetic Rat Vessels

Background:

Hypertension is considered an independent risk factor for cardiovascular mortality in diabetic patients. The present study was designed to determine the role of gamma amino butyric acid B (GABA_B) receptor and L-arginine (L-Arg) in GABA-induced vasorelaxation in normal and streptozotocin-induced diabetic rat vessels.

Methods:

Diabetes was induced by a single i.p. injection of streptozotocin (STZ, 60 mg/kg). Eight weeks later, superior mesenteric arteries of all groups were isolated and perfused according to the McGregor method.

Results:

Baseline perfusion pressure of STZ diabetic rats was significantly higher than non-diabetic rats in both intact and denuded endothelium. In the presence of faclofen, a selective GABA_B receptor blocker, GABA-induced relaxation in intact and denuded endothelium mesenteric beds of STZ diabetic rats was suppressed, but this response in non-diabetic rats was not suppressed. Our results showed that in the presence of L-Arg, a nitric oxide precursor, GABA induced vasorelaxation in both diabetic and non-diabetic vessels.

Conclusion:

From the results of this study, it may be concluded that the vasorelaxatory effect of GABA in diabetic vessel is mediated by the GABA_B receptor and nitric oxide, but it seems that in non-diabetic vessel GABA_B receptor does not play any role in GABA-induced vasorelaxation, but nitric oxide induced GABA relaxation in non-diabetic vessel. Key Words: Gamma amino butyric acid (GABA), Diabetes, GABA_B receptor     

Evaluation of Neurogenic Potential of Human Umbilical Cord Mesenchymal Cells; a Time- and Concentration-Dependent Manner

Background:

Retinoic acid as one of the most important regulators for cell differentiation was examined in this study for differentiation of human umbilical mesenchymal cells (hUCM).

Methods:

After isolation, hUCM were evaluated for mesenchymal stem cell properties by flow cytometry and alkaline phosphatase assay. Also, doubling time of the cells and their differentiation potential into adipogenic and osteogenic cells were tested. hUCM were then cultured with different concentrations of retinoic acid, and on days 1, 7, and 12, the percentage of differentiated cells was determined by immunostaining for nestin, anti-microtubule associated protein 2 (MAP₂), glutamic acid decarboxylase (GAD), and gamma-aminobutyric acid (GABA) markers.

Results:

The isolated cells were negative for the hematopoietic markers and positive for the mesenchymal markers. They showed the population doubling time 60 ± 3 hours and differentiated into osteogenic and adipogenic cells. A descending trend in nestin and an ascending trend in MAP₂, GAD, and GABA expression were observed from the first day until the last day between different concentrations of retinoic acid.

Conclusion:

hUCM cells may have the potential to differentiate into neural cells in the presence of different incubation period and concentration of retinoic acid.Key Words: Cell differentiation, Neural stem cells, Retinoic acid     

Delineation of Inheritance Pattern of Aleurone Layer Colour Through Chemical Tests in Rice

Background

Rice aleurone layer develops different colours with various chemical tests that may help to develop some rapid tests for identification/grouping of rice varieties. Understanding the colour inheritance pattern could enable to develop chemical clues that may help for genetic purity analysis along with grow-out-test.

Results

In this study, inheritance pattern of aleurone layer colour was studied in parents, F₁ and F₂ progenies derived from the crosses IR 36 × Acc. No. 2693 and IR 64 × Acc. No. 2693. The parent IR 36 showed light yellow (NaOH/KOH) and brown (phenol/modified phenol test) colour; whereas, Acc. No. 2693 revealed wine red/dark wine red (NaOH/KOH) and light brown colour/no reaction (phenol/modified phenol test). In contrary, another parent IR 64 exhibited light yellow (KOH/NaOH) and dark brown (phenol, modified phenol) colour. Both the F₁ showed an intermediate light wine red colour (NaOH/KOH) and dark brown (phenol and modified phenol) colour, which is dominant over their one of the parents. The colour pattern with standard phenol/modified phenol, NaOH and KOH tests in F₂ progenies of both the crosses showed 9:7 (complementary gene interaction) and 11:5 ratios (reciprocal dominance modification of recessive alleles), respectively.

Conclusions

Our findings clearly elucidate the colour inheritance pattern in rice that may facilitate to develop rapid chemical tests to identify/ group the varieties for genetic purity analysis.

     

Age-Specific Gastric Cancer Risk Indicated by the Combination of Helicobacter pylori Sero-Status and Serum Pepsinogen Levels

Background:

Serologic screening of gastric cancer (GC) by serum pepsinogens (sPG) levels and Helicobacter pylori (Hp) sero-status, though highly informative, has provided heterogeneous results. Here, we have evaluated the modifying effects of demographic factors on the risk impact of Hp sero-status/sPG levels in gastric cancer, with particular emphasis on age.

Methods:

A cross-sectional study was carried out on 1341 individuals (GC = 578, healthy = 763), who were stratified into two age groups: 35-59 years (middle-aged, n = 830) and ≥ 60 years (60 years-plus, n = 511). Demographic factors and serological states (Hp sero-staus and sPG levels) were recorded by subject interview and serum ELISAs, respectively. Covariate-specific odds ratios were calculated by multivariable logistic regression.

Results:

Hp infection was consistently associated with increased sPGI and sPGII levels in the 60 year-plus, but not the middle-aged group. The joint examination of the variable states of the three serum biomarkers (Hp serology, sPGI, and sPGI/II ratio), in the 60 year-plus age group, demonstrated a stepwise escalation of risk from the single (sPGI_low; OR = 2.6), to double (sPGI_low/sPGI/II_low; OR = 3.55, and Hp_positive/sPGI_low; OR = 5.0) and ultimately triple (Hp_positive/PGI_low/PGI/II_low; OR = 10.48) positive states, in reference to the triple negatives. However, this pattern was not exhibited in the middle-aged subjects.

Conclusion:

Age was clearly identified as a modifying factor on the risk projection of the combined states of Hp serology and sPG levels in gastric cancer screening, reflected by the augmented (~10.5 fold) risk of GC in the triple positive (Hp_positive/sPGI_low/sPGI/II_low) 60 year-plus subjects, which was not evident in the middle-aged group. Key Words: Biomarkers, Demography, Age Distribution     

Controlled-release fertilizer,floating duckweed,and biochar affect ammonia volatilization and nitrous oxide emission from rice paddy fields irrigated with nitrogen-rich wastewater

It is of great concern that nitrogen-rich (N-rich) wastewater irrigation increases ammonia (NH₃) volatilization from rice (Oryza sativa L.) paddy fields. A pilot-scale field trial was conducted to study the impact of different management practices on reducing NH₃ volatilization and their subsequent impacts on nitrous oxide (N₂O) emission from a paddy field irrigated with N-rich wastewater generated by livestock production and supplemented with urea N fertilizer. A total of 225 kg N ha^?1 combined with urea and N-rich wastewater was split into basal, the first, and second supplementary applications for the following five treatments: urea N mixed with controlled-release N fertilizer (BBF), floating duckweed (FDW), biochar alone (BC), biochar mixed with calcium superphosphate (BCP), and control with no amendment (CK). Results showed that each treatment had similar pattern of NH₃ volatilization and N₂O emission after N application. Treatments of BBF, FDW, and BCP effectively reduced NH₃ losses by 22.8, 55.2, and 39.2 %, respectively, compared with the CK. BBF treatment decreased NH₃ volatilization after the first supplementary N fertilization; BCP treatment reduced NH₃ volatilization after the basal fertilization; and FDW treatment reduced NH₃ volatilization after both the basal and first supplementary fertilization. Besides controlling the NH₃ volatilization, BCP treatment also reduced 19.5 % of N₂O loss. However, BC alone suppressed N₂O emission by 24.3 %, but did not reduce NH₃ loss. The findings can practically guide farmers to choose the appropriate management practices in improving N use efficiency and minimizing the impact of fertilization on environmental quality.     

A QTL on mouse chromosome 12 for the genetic variance in free-running circadian period between inbred strains of mice

Background  

Many genes control circadian period in mice. Prior studies suggested a quantitative trait locus (QTL) on proximal mouse chromosome 12 for interstrain differences in circadian period. Since the B6.D2NAhr ^d /J strain has DBA/2 alleles for a portion of proximal chromosome 12 introgressed onto its C57BL/6J background, we hypothesized that these mice would have a shorter circadian period than C57BL/6J mice.     

Biotic and abiotic drivers of intraspecific trait variation within plant populations of three herbaceous plant species along a latitudinal gradient

Background

The importance of intraspecific trait variation (ITV) is increasingly acknowledged among plant ecologists. However, our understanding of what drives ITV between individual plants (ITV_BI) at the population level is still limited. Contrasting theoretical hypotheses state that ITV_BI can be either suppressed (stress-reduced plasticity hypothesis) or enhanced (stress-induced variability hypothesis) under high abiotic stress. Similarly, other hypotheses predict either suppressed (niche packing hypothesis) or enhanced ITV_BI (individual variation hypothesis) under high niche packing in species rich communities. In this study we assess the relative effects of both abiotic and biotic niche effects on ITV_BI of four functional traits (leaf area, specific leaf area, plant height and seed mass), for three herbaceous plant species across a 2300 km long gradient in Europe. The study species were the slow colonizing Anemone nemorosa, a species with intermediate colonization rates, Milium effusum, and the fast colonizing, non-native Impatiens glandulifera.

Results

Climatic stress consistently increased ITV_BI across species and traits. Soil nutrient stress, on the other hand, reduced ITV_BI for A. nemorosa and I. glandulifera, but had a reversed effect for M. effusum. We furthermore observed a reversed effect of high niche packing on ITV_BI for the fast colonizing non-native I. glandulifera (increased ITV_BI), as compared to the slow colonizing native A. nemorosa and M. effusum (reduced ITV_BI). Additionally, ITV_BI in the fast colonizing species tended to be highest for the vegetative traits plant height and leaf area, but lowest for the measured generative trait seed mass.

Conclusions

This study shows that stress can both reduce and increase ITV_BI, seemingly supporting both the stress-reduced plasticity and stress-induced variability hypotheses. Similarly, niche packing effects on ITV_BI supported both the niche packing hypothesis and the individual variation hypothesis. These results clearly illustrates the importance of simultaneously evaluating both abiotic and biotic factors on ITV_BI. This study adds to the growing realization that within-population trait variation should not be ignored and can provide valuable ecological insights.

     

Generalist dinoflagellate endosymbionts and host genotype diversity detected from mesophotic (67-100 m depths) coral Leptoseris

Background  

Mesophotic corals (light-dependent corals in the deepest half of the photic zone at depths of 30 - 150 m) provide a unique opportunity to study the limits of the interactions between corals and endosymbiotic dinoflagellates in the genus Symbiodinium. We sampled Leptoseris spp. in Hawaii via manned submersibles across a depth range of 67 - 100 m. Both the host and Symbiodinium communities were genotyped, using a non-coding region of the mitochondrial ND5 intron (NAD5) and the nuclear ribosomal internal transcribed spacer region 2 (ITS2), respectively.     

GIS habitat analysis for lesser prairie-chickens in southeastern New Mexico

Background  

We conducted Geographic Information System (GIS) habitat analyses for lesser prairie-chicken (LPCH, Tympanuchus pallidicinctus) conservation planning. The 876,799 ha study area included most of the occupied habitat for the LPCH in New Mexico. The objectives were to identify and quantify: 1. suitable LPCH habitat in New Mexico, 2. conversion of native habitats, 3. potential for habitat restoration, and 4. unsuitable habitat available for oil and gas activities.     

Impact of biodiversity-climate futures on primary production and metabolism in a model benthic estuarine system

Background  

Understanding the effects of anthropogenically-driven changes in global temperature, atmospheric carbon dioxide and biodiversity on the functionality of marine ecosystems is crucial for predicting and managing the associated impacts. Coastal ecosystems are important sources of carbon (primary production) to shelf waters and play a vital role in global nutrient cycling. These systems are especially vulnerable to the effects of human activities and will be the first areas impacted by rising sea levels. Within these coastal ecosystems, microalgal assemblages (microphytobenthos: MPB) are vital for autochthonous carbon fixation. The level of in situ production by MPB mediates the net carbon cycling of transitional ecosystems between net heterotrophic or autotrophic metabolism. In this study, we examine the interactive effects of elevated atmospheric CO₂ concentrations (370, 600, and 1000 ppmv), temperature (6°C, 12°C, and 18°C) and invertebrate biodiversity on MPB biomass in experimental systems. We assembled communities of three common grazing invertebrates (Hydrobia ulvae, Corophium volutator and Hediste diversicolor) in monoculture and in all possible multispecies combinations. This experimental design specifically addresses interactions between the selected climate change variables and any ecological consequences caused by changes in species composition or richness.     

Influence of irrigation frequency on greenhouse gases emission from a paddy soil

Water management is known to be a key factor on methane (CH₄), carbon dioxide (CO₂), and nitrous oxide (N₂O) emissions from paddy soils. A field experiment was conducted to study the effect of continuous irrigation (CI) and intermittent irrigation (II) on these emissions. Methane, CO₂, and N₂O emissions from a paddy soil were sampled weekly using a semi-static closed chamber and quantified with the photoacoustic technique from May to November 2011 in Amposta (Ebro Delta, NE Spain). Intermittent irrigation of rice paddies significantly stimulated (N₂O + N₂)–N emission, whereas no substantial N₂O emission was observed when the soil was re-wetted after the dry phase. The cumulative emission of (N₂O + N₂)–N was significantly larger from the II plots (0.73 kg N₂O–N ha^?1 season^–1, P < 0.05) than from the CI plots (?1.40 kg N₂O–N ha^?1 season^?1). Draining prior to harvesting increased N₂O emissions. Draining and flooding cycles controlled CO₂ emission. The cumulative CO₂ emission from II was 8416.35 kg CO₂ ha^?1 season^?1, significantly larger than that from CI (6045.26 kg CO₂ ha^?1 season^?1, P < 0.05). Lower CH₄ emission due to water drainage increased CO₂ emissions. The soil acted as a sink of CH₄ for both types of irrigation. Neither N₂O–N nor CH₄ emissions were affected by soil temperature. Global warming potential was the highest in II (4738.39 kg CO₂ ha^?1) and the lowest in CI (3463.41 kg CO₂ ha^?1). These findings suggest that CI can significantly mitigate the integrative greenhouse effect caused by CH₄ and N₂O from paddy fields while ensuring the highest rice yield.     

Genetic structure of Leptopilina boulardi populations from different climatic zones of Iran

Background  

The genetic structure of populations can be influenced by geographic isolation (including physical distance) and ecology. We examined these effects in Leptopilina boulardi, a parasitoid of Drosophila of African origin and widely distributed over temperate and (sub) tropical climates.     

Association of tcdA+/tcdB+ Clostridium difficile Genotype with Emergence of Multidrug-Resistant Strains Conferring Metronidazole Resistant Phenotype

Background:

Reduced susceptibility of Clostridium difficile to antibiotics is problematic in clinical settings. There is new evidence indicating the cotransfer of toxin-encoding genes and conjugative transposons encoding resistance to antibiotics among different C. difficile strains. To analyze this association, in the current study, we evaluated the frequency of toxigenic C. difficile among the strains with different multidrug-resistant (MDR) profiles in Iran.

Methods:

Antimicrobial susceptibility patterns and minimal inhibitory concentrations (MIC) of the isolates were determined against metronidazole, imipenem, ceftazidime, amikacin, and ciprofloxacin by agar dilution method. The association of the resistance profiles and toxigenicity of the strains were studied by PCR targeting tcdA and tcdB genes.

Results:

Among 86 characterized strains, the highest and lowest resistance rates were related to ciprofloxacin (97%) and metronidazole (5%), respectively. The frequency of resistance to other antibiotics was as follow: imipenem (48%), ceftazidime (76%), and amikacin (76.5%). Among the resistant strains, double drug resistance and MDR phenotypes were detected in the frequencies of 10.4% and 66.2%, respectively. All of the metronidazole-resistant strains belonged to tcdA ⁺/tcdB ⁺ genotype with triple or quintuple drug resistance phenotypes. MIC₅₀ and MIC₉₀ for this antibiotic was equally ≤ 8 μg/ml.

Conclusion:

These results proposed the association of tcdA ⁺/tcdB ⁺ genotype of C. difficile and the emergence of resistance strains to broad-spectrum antibiotics and metronidazole. Key Words: Multidrug resistance, Clostridium difficile, Metronidazole     

Dissection and fine-mapping of two QTL for grain size linked in a 460-kb region on chromosome 1 of rice

Background

Grain size is a key determinant of grain weight and a trait having critical influence on grain quality in rice. While increasing evidences are shown for the importance of minor-effect QTL in controlling complex traits, the attention has not been given to grain size until recently. In previous studies, five QTL having small effects for grain size were resolved on the long arm of chromosome 1 using populations derived from indica rice cross Zhenshan 97///Zhenshan 97//Zhenshan 97/Milyang 46. One of them, qTGW1.2c that was located in a 2.1-Mb region, was targeted for fine-mapping in the present study.

Results

Firstly, the qTGW1.2c region was narrowed down into 1.1 Mb by determining genotypes of the cross-over regions using polymorphic markers newly developed. Then, one BC₂F₉ plant that was only heterozygous in the updated QTL region was identified. A total of 12 populations in generations from BC₂F_11:12 to BC₂F_15:16 were derived and used for QTL mapping. Two QTL linked in a 460-kb region were separated. The qGS1-35.2 was delimited into a 57.7-kb region, containing six annotated genes of which five showed nucleotide polymorphisms between the two parental lines. Quantitative real-time PCR detected expression differences between near isogenic lines for qGS1-35.2 at three of the six annotated genes. This QTL affected grain length and width with opposite allelic directions, exhibiting significant effect on ratio of grain length to width but showing little influence on yield traits. The other QTL, qGW1-35.5, was located within a 125.5-kb region and found to primarily control grain width and consequently affect grain weight.

Conclusions

Our work lays a foundation for cloning of two minor QTL for grain size that have potential application in rice breeding. The qGS1-35.2 could be used to modify grain appearance quality without yield penalty because it affects grain shape but hardly influences grain yield, while qGW1-35.5 offers a new gene recourse for enhancing grain yield since it contributes to grain size and grain weight simultaneously.

     

Effect of litter separation on 24-hour rhythmicity of plasma prolactin,follicle-stimulating hormone and luteinizing hormone levels in lactating rabbit does

Background  

This work describes the effect of a 48-h litter separation on 24-h patterns of plasma prolactin, FSH and LH concentration in female lactating rabbits kept under a 16:8 light-dark photoperiod (lights on at 0800 h).     

Enhancing the performance of transplanted coarse rice by seed priming

Raising the rice seedlings in the nursery and its transplantation into the flooded fields is principal method of rice cultivation in the world. Traditional nursery raising method in Pakistan is tedious and produces week seedlings, which reduces the final yield due to high mortality. The potential of seed priming to improve the nursery seedlings and thus the transplanted rice was evaluated in the present study. Seed priming tools employed during the investigation included traditional soaking (pre-germination), hydropriming for 48 h, osmohardening (KCl or CaCl₂) (ψs-1.25 MPa) for 24 h (1 cycle), ascorbate priming (with 10 ppm ascorbate) for 48 h or seed hardening for 24 h. Priming improved nursery seedling vigor and resulted in improved growth, yield and quality of transplanted rice. Osmohardening (KCl) consequently resulted in the best performance, followed by osmohardening (CaCl₂)_, hardening and ascorbate priming. Osmohardening (KCl) produced 4.28 t ha⁻¹ (vs. 3.51 t ha⁻¹ from untreated control) kernel yield, 10.27 t ha⁻¹ (vs. 9.34 t ha⁻¹ from untreated control) straw yield and 29.41% (vs. 27.31% from untreated control) harvest index. The improved yield was attributed to increase in number of fertile tillers.