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1.
Summary DNA polymorphism among five Asparagus officinalis L. cultivars-Imperial, Snow, Steline, UC-157 and Larac, as detected by random amplified polymorphic DNA (RAPD), is reported. Thirty one decamer primers were tested. and twenty six of them yielded amplification products. Fourteen primers gave products with at least one polymorphic DNA fragment. Among a total of 119 amplified fragments 33 were polymorphic. These RAPD markers enabled the identification of asparagus cultivars. Unique markers for cultivars were: Snow-bands 475 bp, 772 bp, 412 bp, 935 bp and 820 bp amplified by primers D5, OPA-07, OPA-09, OPA-10 and OPA-18, respectively. Steline-bands 645 bp, 680 bp and 997 bp amplified by primers A32, OPA-03 and OPA-09, respectively. A band 903 bp, amplitied by primer OPA-12, is a marker for Imperial, and a band 420 bp, amplified by primer D52, is a marker for Larac. Cultivar UC-157 could be identified by a combination of shared polymorphic bands. The pairwise marker difference between cultivars ranged from 0.08 to 0.17. A phenogram of the genetic relationship based on RAPD fits with the known origin of the cultivars. 相似文献
2.
Genetic characterization and identification of new accessions from Syria in an olive germplasm bank by means of RAPD markers 总被引:4,自引:0,他引:4
Angjelina Belaj Juan M. Caballero Diego Barranco Luis Rallo Isabel Trujillo 《Euphytica》2003,134(3):261-268
Thirty-two olive cultivar accessions from Syria, most of them obtained from collecting expeditions, were characterized by
means of RAPD markers before being introduced in the World Germplasm Bank of Cordoba. A total of 79 polymorphic bands(6.1
polymorphisms per primer) out of 93(7.1 bands per primer) were scored for the13 primers used, corresponding to 84.9% of the
amplification products. Thirty-one different genotypes were clearly discriminated. Differences were not found among the amplification
profiles from different individuals of the same cultivar. Only two cases of mislabeling or errors of planting were found.
Fourteen accessions corresponding to 6 homonyms were discriminated by RAPDs as different genotypes. The dendrogram obtained
by RAPD analysis included three major groups. Some evidence of relationships of the Syrian accessions studied according to
their geographic origin and/or diffusion was found. For instance, cultivars from the Central Syria (Tadmur/Palmyra)such as
Toffahi', ‘Abbadi Abo Gabra’-1033,‘Abo Kanani’, ‘Shami’-1041, ‘Abbadi Shalal’ ‘Adgam’-844 and ‘Majhol’-1013 clustered in Group
1 and 2. Six cultivars from Northern Syria clustered in Group 2. But it was not found a geographic structure for the cultivars
from South and West of Syria. These results agree with the hypothesis of autochthonous origin of most of the olive cultivars.
Some associations between cultivars from Central Syria and their fruit size were observed. This suggests that fruit size was
a criterion of local selection in olive cultivars of this area.
This revised version was published online in July 2006 with corrections to the Cover Date. 相似文献
3.
Bhawna Saxena Rajinder Kaur Satya Vrat Bhardwaj 《Journal of Crop Science and Biotechnology》2011,14(3):191-196
Genetic relationship and diversity among seven cabbage cultivars were analyzed using RAPD and SSR markers. These cultivars
are of great commercial value in India and are confirmed for their reaction to black rot caused by Xanthomonas campestris pv. campestris. However, so far the extent of genetic diversity and relatedness has not been studied in these cultivars. A total of 17 selected
RAPD primers generated 90 bands, 76 of which were polymorphic (84.44%). In addition, 27 selected SSR primers generated 67
amplified bands with 59 of which were polymorphic (87.6%). Though both the marker techniques were able to discriminate the
cultivars effectively, analysis of combined data of markers (RAPD and SSR) resulted in better distinction of cultivars. By
combining both the markers, a total of 157 bands were detected of which 135 bands (85.98%) were polymorphic, i.e. an average
of 5.95 bands per primer. High level of polymorphism (> 85%) recorded with two different marker systems indicated a high level
of genetic variation existing among the cultivars. Genetic relationship estimated using similarity co-efficient (Jaccard’s)
values between different pairs of cultivars varied from 0.21 to 0.77 in RAPD, 0.42 to 0.82 in SSR, and 0.43 to 0.89 with combined
markers. A high correspondence had been recorded between the values of genetic variations generated by UPGMA, clustering,
and scatter plot diagrams. The cultivars ‘January King Sel. Improved’ and ‘Golden Acre’ are highly divergent cultivars as
demonstrated by both the marker systems. 相似文献
4.
Genetic variation within and between two cultivars of red clover (Trifolium pratense L.): Comparisons of morphological,isozyme, and RAPD markers 总被引:2,自引:0,他引:2
Summary Morphological, isozyme and random amplified polymorphic DNA (RAPD) markers were used to estimate genetic variation within and between cultivars of red clover (Trifolium pratense L.), an important temperate forage legume. Two cultivars of red clover, Essi from Europe and Ottawa from Canada, were evaluated. Six monogenic morphological characters were observed for 80 plants from each of these two cultivars. All six morphological loci were polymorphic in the cultivar Essi whereas only four loci were polymorphic in the cultivar Ottawa. Forty plants from each cultivar were assayed for isozyme markers. A total of 21 enzyme-coding loci with 43 alleles was detected using twelve enzyme systems. Thirteen and nine of these loci were polymorphic in Essi and Ottawa, respectively. The mean number of alleles per locus was 1.81 in Essi and 1.67 in Ottawa. Seventeen random 10-mer primers were screened for RAPD markers. Nine primers which gave clear and consistent amplified products were used to assay 20 individuals from each cultivar. Each primer gave from 7 to 20 amplified bands with an average of 14.8 bands per primer. One hundred and eight of 116 putative loci were polymorphic in Essi and 90 of 98 loci were polymorphic in Ottawa. High within-cultivar variation was observed in both cultivars using both isozyme and RAPD markers. This high polymorphism makes these markers useful for germplasm characterization and genetic studies in red clover. 相似文献
5.
利用基因组DNA的RAPD、ISSR与SRAP等3种分子标记技术,以日本芜菁品种作为外类群,对来自于温州不同地区具有代表性的10个盘菜品种进行品种鉴定与遗传多样性分析。10个RAPD引物共产生多态性条带70条,多态率为71.7%;12个ISSR引物共产生142条清晰带,其中多态性条带70条,多态率为49.3%;8个SRAP引物组合共产生105条谱带,其中多态性谱带78条,多态性比率为74.3%,表明品种间存在较高的多态性。用单个引物NAURP299、NAUISR43以及SRAP引物组合mel/em2,都可以将11个品种完全区分开来。基于3种标记的聚类分析结果表明,11个材料可以分为3大类,一定程度上能够揭示品种之间园艺学性状的相似性及亲缘关系远近。 相似文献
6.
Genetic variation of sweet potatoes (Ipomoea batatas L.) cultivated in Chile determined by RAPDs 总被引:1,自引:0,他引:1
Boris Sagredo Patricio Hinrichsen Horacio López Alberto Cubillos Carlos Muñoz 《Euphytica》1998,101(2):193-198
RAPD (randomly amplified polymorphic DNA) technology was applied to analyze the genetic variability of sweet potato germplasm
existing in Chile and elsewhere. Analysis of 28 cultivars from all over the world showed polymorphic bands with all 18 primers
tested. A total of 124 RAPD bands were scored with an average of 6.9 polymorphic bands per primer. These results confirm that
sweet potato exhibits high genetic variation. Two groups were distinguished: one containing Peruvian cultivars, and another
containing cultivars from the rest of the world. Analysis of 14 accessions from Central Chile and one from Northern Chile
showed polymorphic bands with 24 of 26 primers tested, but almost all of the 140 polymorphic bands merely showed the distinctness
of the Northern accession. The almost complete uniformity of the other 14 accessions shows that sweet potato germplasm collected
in Central Chile has very little genetic variability and may be derived from a single cultivar.
Based on these results and on historical records, some hypotheses are proposed to explain the origin of sweet potatoes cultivated
in Chile.
This revised version was published online in July 2006 with corrections to the Cover Date. 相似文献
7.
克新系列马铃薯遗传多样性的RAPD分析 总被引:3,自引:1,他引:2
利用RAPD标记技术对19份克新系列马铃薯品种进行了遗传多样性分析,分别提取19份马铃薯品种的DNA,进行随机引物多态性扩增,从1000条随机引物中初步筛选出7条有多态性的引物进行详细研究,每条RAPD引物扩增出4~9条带,共获得52条带,其中多态性条带为43条;19份马铃薯品种的遗传距离介于0.17~0.72之间,平均值为0.39,平均遗传距离介于0.31~0.51之间;聚类分析结果在GS=0.53处可将克新系列马铃薯品种划分为三类,聚类结果与系谱分析基本相符,同时也说明克新系列马铃薯的遗传基础有所拓宽。研究表明:RAPD标记简便、快速、成本低,适用于分析马铃薯遗传多样性,指导马铃薯育种实践中的亲本组配。 相似文献
8.
Evidence of gene introgression in apple using RAPD markers 总被引:4,自引:0,他引:4
Summary A genomic remnant of Malus floribunda clone 821 introgressed into the cultivated apple M. x domestica Borkh. was identified using randomly amplified polymorphic DNA (RAPD) markers obtained by the polymerase chain reaction (PCR). Using a set of 59 oligonucleotide decamer primers, polymorphic DNA markers were identified among three pooled DNA samples. Based on the presence or absence of bands among bulked apple scab-resistant selections and cultivars, bulked scab-susceptible cultivars, and a M. floribunda clone 821 sample, one primer, A 15, identified amplified fragments in the scab-resistant bulked sample that was also unique to the M. floribunda clone 821. The unique band from M. floribunda clone 821 was amplified in four out of 17 scab-resistant selections/cultivars. This RAPD, designated OA15900, identifies an introgressed fragment that has as yet no known function. 相似文献
9.
Aromatic rices are preferred by the consumers all over the world due to its flavour and palatability. Although a large number
of these collections are available, little systematic analysis of genetic diversity has been carried out. With the objective
of identification and classification of aromatic rice genotypes, RAPD profiling was employed using 58 random decamer primers.
Most of these primers (96.5%) detected polymorphism among the genotypes. Of the 465 amplified bands, 314 were polymorphic.
Cluster analysis based on Jaccard's similarity coefficient using UPGMA grouped all the traditional tall, photosensitive, low
yielding, long grained ‘basmati’ aromatics together. The short grained aromatic cultivars, formed a different cluster with
high level of average similarity among themselves. The dendrogram based on 58 primers was highly similar to that based on
10 and 15 primers with matrix correlation (r) of 0.88 and 0.91, respectively. This suggested that a set of 10 primers can
be employed for an initial assessment of genetic diversity in a large number of collections. All the rice genotypes included
in the study could be distinguished from each other at the level of 19 to 186 polymorphic bands between individuals in pair
wise comparison over all the 58 primers. Probability of identical profiles by chance suggested that about 1041 genotypes can be unambiguously differentiated by RAPD fingerprints obtained by 58 primers. A diagrammatic mode of presentation
of DNA fingerprints of the aromatic rices based on 10 of the informative primers was developed.
This revised version was published online in July 2006 with corrections to the Cover Date. 相似文献
10.
用RAPD、ISSR和AFLP标记分析系谱关系明确的甘薯品种的亲缘关系 总被引:24,自引:1,他引:24
用RAPD、ISSR和AFLP标记对系谱关系明确的7个甘薯品种进行了亲缘关系分析。24个RAPD引物、14个ISSR引物和9对AFLP引物分别扩增出173、174和168条多态性带。3种分子标记在检测甘薯品种间遗传差异上相关程度高,其中RAPD与ISSR之间的相关系数最大为0.9328。用ISSR标记估计的品种间遗传距离为0.1286~1.0932,平均0.4883,大于其余2个标记的估计值。3种分子标记皆可揭示甘薯品种的亲缘关系,其中ISSR标记产生的聚类图与系谱图最吻合,认为ISSR标记更适于分析甘薯品种的亲缘关系。 相似文献
11.
Variation in Capsicum annuum revealed by RAPD and AFLP markers 总被引:16,自引:0,他引:16
Genetic relationships were examined among thirty-four pepper (Capsicum annuum) cultivars of different types. Two types of
PCR-based markers were used, RAPD and AFLP, and their relative effectiveness was compared. A dendrogram based on RAPD markers
separated the large-fruited sweet cultivars from the small-fruited pungent peppers, and the former group showed less divergence
than the latter. The percentage of polymorphic markers was lower for AFLP than for RAPD markers (13 and 22% respectively).
However, AFLP primers amplified on average six times more products than RAPD markers. The average numbers of polymorphic products
per primer were 1.6 and 6.5 for RAPD and AFLP primers, respectively, i.e., AFLP primers were four times more efficient than
RAPD primers in their ability to detect polymorphism in pepper. While four blocky type cultivars were indistinguishable by
RAPD, two AFLP primer pairs were sufficient to distinguish the four cultivars from each other.
This revised version was published online in July 2006 with corrections to the Cover Date. 相似文献
12.
Amit Kaushik Navinder Saini Sunita Jain Poonam Rana R.K. Singh Rajinder K. Jain 《Euphytica》2003,134(2):231-238
Segregation for salinity tolerance and ISSR markers based molecular polymorphism were investigated in a F3 plant population raised via single-seed descent method from a cross between salt-tolerant indica rice variety CSR10 and salt-susceptible
premium traditional Basmati rice variety Taraori Basmati HBC19. A total of 130 F3plants were evaluated individually for salinity tolerance on 1–9 scale on the basis of seedling growth parameters; the average
score ranged between 1.7 to 8.3. Frequency distribution curve obtained using the salinity tolerance data of F3 population and a chi-square analysis, showed a good fit to a normal distribution. Eleven plants each in the category of salt-tolerant
and salt-susceptible were selected from the segregating F3 population for ISSR marker analysis. A total of 149 bands (4–11 bands per primer) ranging from 200 to 3530 bp were scored
for the two rice varieties and the selected CSR10 × HBC19 segregating F3 plants using 26 ISSR primers. Of these, 89 were monomorphic and 60 were polymorphic. Of the 60 polymorphic bands,36 and 20
bands were specific to CSR10 andHBC19 respectively. The remaining four bands were amplified using UBC primers 810,848, 853
and 886 and present in only some of the CSR10 × HBC19 F3 plants. Notably, ISSR primers with dinucleotide repeat motif and 5'-anchored end amplified more number of bands (7.0 bands/primer)
compared to3'-anchored dinucleotide primers (5.4bands/primer), but 3'-anchored dinucleotide primers revealed higher level
of polymorphism (2.6 polymorphic bands/primer) compared to 5'-anchoreddinucleotide primers (1.43 polymorphic bands/ primer).
While distribution of majority of the polymorphic bands were more or less in the expected ratios in salt-tolerant and/or salt-sensitive
F3segregating plants, but some of the bands amplified using UBC ISSR primers 823, 825,826, 849, 853, 864, 866 and 884 showed
highly skewed distribution. Such polymorphic bands stand greater chances of having a linkage with the genes/ QTLs for salinity
tolerance and shall be the target for further studies.
This revised version was published online in July 2006 with corrections to the Cover Date. 相似文献
13.
Twenty two RAPD and 22 ISSR markers were evaluated for their potential use in determination of genetic relationships in chickpea
(Cicer arietinum L.) cultivars and breeding lines. We were able to identify six chickpea cultivars/breeding lines by cultivar-specific markers.
All of the cultivars tested displayed a different phenotype generated either by the RAPD or ISSR primers. Though ISSR primers
generated less markers than RAPD primers, the ISSR primers produced higher levels of polymorphism (% of polymorphic markers
per primer) than RAPD primers. A high level of within cultivar homogeneity was observed in chickpea. Cultivars/breeding lines
originating from a common genetic background showed closer genetic relationship. Chickpea lines with similar seed type(kabuli
or desi) had a tendency to cluster together.
This revised version was published online in August 2006 with corrections to the Cover Date. 相似文献
14.
利用RAPD技术鉴定大白菜主栽品种及品种间遗传多样性分析 总被引:7,自引:0,他引:7
采用随机引物扩增多态DNA(RAPD)技术分析了21个大白菜主栽品种。用13个引物共扩增出87个清晰可重复的DNA片段,其中39条带具有多态性,多态性条带的频率为44.8%。OPE01是多态性频率最高的引物,它可区分15个大白菜品种,再与引物OPH03和OPH12配合,即可将21个大白菜品种区别开。 相似文献
15.
Forty-one apple (Malus × domestica Borkh.) cultivars were screened for RAPD (Random Amplified Polymorphic DNA) and AFLP(Amplified Fragment Length Polymorphism)
markers. RAPD analysis was performed with 35 arbitrary 10-mer primers, selected from 60 primers tested (kits A, C and E, Operon
Technologies, Inc.). Of a total of 362bands observed, 208 (57.5%) were polymorphic. Three-hundred-and-eighty-one AFLP fragments
were obtained with 8primer combinations, of which 218 (57.2%) were polymorphic. Cultivars differentiated through mutation
were included in this study and showed identical patterns when analysed with both RAPD and AFLP analysis. The estimated genetic
relationships were correlated (r = 73.7%) between the analysis with the two different markers. UPGMA analysis was performed
and dendrograms were constructed using either the data apart from each(RAPD and AFLP) method or combined in a single joint
matrix. The relationships among the forty-one studied cultivars were basically consistent with the known lineage and geographic
origins of the cultivars. The four Portuguese cultivars included in this study clustered together and diverged from the other
cultivars. Apparently they constitute an independent genetic pool, which could be of interest for apple plant breeders.
This revised version was published online in July 2006 with corrections to the Cover Date. 相似文献
16.
Genetic variation among five elite winter barley cultivars (H. vulgare L.) currently grown in Bulgaria was assessed at the molecular level using restriction fragment length polymorphism (RFLP)
and randomly amplified polymorphic DNA (RAPD) markers. The present study sampled RFLPs in four well characterized multigene
families in barley: the seed storage protein loci; the 18S, 5.8S and 26S ribosomal DNA loci; the loci coding for 5S ribosomal
RNA and the loci coding subunit α of ATP-A complex in the mitochondrial genome. RFLPs were detected in three out of five investigated
chromosomal loci in the barley cultivars studied. RAPD assay using arbitrary 10-base primers was applied to generate amplified
length polymorphic markers in barley. Overall a total of 15 polymorphic phenotypes were found among the studied barley cultivars
by using 11 out of 25 tested primers. All RAPDs were considered as dominant genetic markers except for two, where PCR and
Southern blot
analysis indicated the presence of codominant amplification products. Five RAPD polymorphisms in F1 and F2 progenies of the cross between Alpha and Obzor were inherited in Mendelian fashion. The determined values for the genetic
variation proved a high genetic similarity among the tested cultivars. Genetic similarity (GS) calculated from RFLP and RAPD data ranged from 0.888 to 0.997 with a mean GS – 0.933.
This revised version was published online in July 2006 with corrections to the Cover Date. 相似文献
17.
Genetic diversity of hexaploid wheat cultivars estimated by RAPD markers, morphological traits and coefficients of parentage 总被引:3,自引:0,他引:3
Estimates of genetic diversity can be based on different types of data. The aim of this research were to study genetic diversity among Croatian wheat cultivars by random amplified polymorphic DNA (RAPD) markers, morphological traits and pedigree records; to analyse differences between wheat cultivars from two breeding centres; and to evaluate usability of RAPD markers for estimation of genetic diversity among wheat cultivars in comparison with morphological traits and pedigree record data. Studies were conducted on 14 wheat cultivars and breeding lines from two breeding centres in Croatia. For the RAPD analysis 36 primers were screened and the 14 most polymorphic ones yielded 341 polymorphic bands. Twelve morphological traits were used for morphological analysis. Pedigrees were composed of seven generations of ancestors. RAPD markers showed a high level of polymorphism among the cultivars examined and the breeding lines. No significant correlations were observed among the methods tested. 相似文献
18.
亚麻RAPD标记分子身份证体系的构建与遗传多样性分析 总被引:3,自引:1,他引:2
本试验选用了1480条RAPD引物,以26份国内外亚麻种质资源或品种为材料,进行了引物筛选。筛选出了32条多态性比较好的引物,32个RAPD标记共产生79个多态性条带,多态性比率为44.4%。并利用这32条引物对26份材料进行了遗传多样性分析,利用UPGMA法做聚类图,计算其遗传相似系数。将26份材料分为3个类群。在筛选出的32个RAPD引物中选出多态性好,特异性好的10个核心引物,编号分别为:S1047、S1230、S1238、S1270、S1314、S1353、S2105、SC07、SH04、ST09。利用这10个核心引物构建了26份亚麻材料的DNA指纹图谱,并将条带的有或无转化成1或0,每份材料构成了一组71位数二进制数据,将每份材料的二进制数据转换为22位的十进制数据,构成了每份材料的分子身份证,初步建立亚麻RAPD标记分子身份证体系。 相似文献
19.