Genotype × environment interactions in pig breeding programmes. I. Central test

In this first paper of a series, Dutch central test results are examined for genotype × environment interaction (G × E) and the data are further used to estimate genetic correlations between the various evaluations of growth and carcass quality, as used in the distinct environments of the breeding programme. G × E in pig breeding programmes is outlined as genotypes expressing different phenotypes in the distinct levels of the breeding programme or even in different environments within a level (e.g. herds).In most studies on G × E, the expectation of genetic correlation between similar traits measured in different environments has been taken to be one. Estimated correlations between similar traits measured on central tested pigs in this study indicate however, that expectations should be smaller, especially for carcass characteristics. Genetic correlations of carcass backfat thickness (CB) with ultrasonic backfat thickness (UB), normally used in on-farm tests, were 0.61 and 0.57 for Dutch Landrace (NL) and Dutch Yorkshire (GY), respectively. Correlations of UB with backfat class, as used in commercial fattening, were 0.25 and 0.42. Genetic correlations of ham + loin % with type class were 0.60 and 0.94. In future analyses of G × E these differences in genetic background of the traits should be taken into account.Genotype × batch and genotype × sex interactions were investigated for daily gain and feed conversion ratio. No significant interactions were found. However, for daily gain between arriving at the station and the end of the test, as well as for weight for age at the end of the test, genotype × batch interaction was significant (P < 0.05). The possible causes of these interactions are discussed. For slaughter characteristics genotype × month interactions were not of significance.     

Genotype × environment interaction for long-yearling weight in Canchim cattle quantified by reaction norm analysis

The objective of this study was to investigate the presence of genotype × environment interactions (G×E) for long-yearling weight in Canchim cattle (5/8 Charolais + 3/8 zebu) in Brazil using reaction norms (RN). The hierarchical RN model included the fixed effect of age of the animal (linear coefficient) and random effects of contemporary groups and additive animal genetic intercept and slope of the RN and contemporary group effects as random effects. Contemporary groups as the most elemental representation of management conditions in beef cattle were chosen to represent the environmental covariate of the RN. The deviance information criteria demonstrated that a homoskedastic residual RN model provided a better data fit compared with a heteroskedastic counterpart and with a traditional animal model, which had the worst fit. The environmental gradient for long-yearling weight based on contemporary group effects ranged from -105 to 150 kg. The additive direct variance and heritability estimates increased with increasing environmental gradient from 74.33 ± 22.32 to 1,922.59 ± 258.99 kg(2) and from 0.08 ± 0.02 to 0.68 ± 0.03, respectively. The high genetic correlation (0.90 ± 0.03) between the intercept and the slope of the RN shows that animals with the greatest breeding values best responded to environmental improvement, characterizing scale effect as the source of G×E for long-yearling weight. The phenotypic plasticity demonstrated by the slope of the RN of the animal indicates the possibility to change genotype expression along the environmental gradient through selection. The results demonstrate the importance of accounting for G×E in the genetic evaluation of this population.     

Genetic parameters for milk,growth, and reproductive traits in Guzerá cattle under tropical conditions

Tropical Animal Health and Production - This study aimed to estimate the genetic parameters of milk (305-day milk yield (MY305)), growth (weaning weight (WW), yearling weight (YW), and weight at...     

The effect of non-genetic factors on the reproductive performance of Sanga and Friesian × Sanga crossbred dairy cattle breeds kept under hot and humid environment

A study was conducted to assess the effect of non-genetic factors on the reproductive performance of Sanga and Friesian?×?Sanga crossbred dairy cattle kept at Amrahia Dairy Farm, Ghana. Records on 66 crossbred Friesian?×?Sanga and 105 purebred Sanga cattle from 2005 to 2012 were used. The effect of sex of calf (male or female), season of calving (major, minor and dry), year of calving (2005–2012) and parity (first to third) on birthweight, calving interval and age at first calving were determined. The data were analyzed using the general linear model procedures of GenStat (Discovery Edition). The effect of parity of dam, year of calving, season of calving and sex of calf were considered as fixed effects for evaluating the different reproductive traits. Data on calving and conception rates over the period were 74.3 and 76.1 %, respectively. The overall mean values for birthweight, age at first calving and calving interval obtained were 23.9?±?1.5 and 22.8?±?1.4 kg, 38.8?±?2.5 and 40.2?±?2.4 months and 390.8?±?12.5 and 413.6?±?12.1 days for the crossbred and Sanga, respectively. It was observed that all the major determinants of reproductive performance studied apart from birthweight were significantly influenced by year of birth, parity, season of calving and sex.     

Effect of RNF4-SacII gene polymorphism on reproductive traits of Landrace × Large White crossbred sows

The aim of the present study was to investigate whether and to what extent the RNF4-SacII gene polymorphism influences reproduction performances in hyperprolific sow lines. The study involved 101 Landrace x Large White crossbred sows, with 461 records collected on the following reproductive traits: Total Number of piglets Born per litter (TNB), Number of piglets Born Alive per litter (NBA), Number of StillBorn piglets per litter (NSB), piglet Pre-Weaning Mortality (PWM) and Number of piglets at Weaning per litter (NW). The least square method with the GLM procedure in SAS with eight effects was used to pursue the data analysis. Study results revealed that TT homozygotes and TC heterozygotes had a significantly higher (p < .05) NW than CC homozygotes for the life-span performance in all parities and first parity analysed. In the fourth parity analysed, TNB and NBA in TC genotype were significantly higher (p < .05) as compared with TT genotype. Based on the life-span performance, significant effect (p < .05) was recorded for order of parity on TNB, NBA and NW, for farrowing season on TNB and NSB, and for lactation length on PWM. In the second parity, significant effect (p < .05) was recorded for sire of boar on NSB and for gestation length on TNB. Only in the fourth parity, significant effect (p < .05) of RNF4 gene was observed on NBA. There was significant additive effect (p < .05) of the RNF4 gene polymorphism identified on NW in all parities analysed, and significant additive and dominance effects (p < .05) on NSB in the third parity analysed. In conclusion, additional research on related production pig genotypes is necessary to elucidate the effect of RNF4 gene mutation on reproductive traits.     

Effects of pituitary-specific overexpression of FSHα/β on reproductive traits in transgenic boars

Background: Follicle-stimulating hormone(FSH) is a gonadotropin synthesized and secreted by the pituitary gland.FSH stimulates follicle development and maturation in females. It also plays an important role in spermatogenesis in males, including humans and mice. However, the effects of FSH on male pigs are largely unknown. In this study,we generated transgenic pigs to investigate the effects of FSHα/β overexpression on reproductive traits in boars.Results: After five transgenic F_0 founders were crossed with wide-type pigs, 193 F_1 animals were obtained. Of these,96 were confirmed as transgenic. FSHα and FSHβ m RNAs were detected only in pituitary tissue. Transgenic boars exhibited significantly higher levels of FSHα and FSHβ m RNA, serum FSH, and serum testosterone, compared to ful-sib non-transgenic boars. Significant increases in testis weight, vas deferens diameter, seminiferous tubule diameter,and the number of Leydig cel s were observed, suggesting that the exogenous FSHα/β affects reproductive traits. Final y,transgenic and non-transgenic boars had similar growth performance and biochemical profiles.Conclusions: Pituitary-specific overexpression of FSHα/β genes is likely to impact reproductive traits positively, as indicated by enhancements in serum testosterone level, testis weight, the development of vas deferens, seminiferous tubules, and Leydig cells in transgenic boars. A high level of serum FSH induces secretion of serum testosterone,possibly by boosting the number of Leydig cells, which presumably increases the libido and the frequency of sexual activity in transgenic boars. Our study provides a preliminary foundation for the genetic improvement of reproductive traits in male pigs.     

Genotype × Environment interactions in pig breeding programmes. II. Environmental effects and genetic parameters in central test

Environmental effects were investigated and genetic parameters estimated in central test results from Dutch Landrance and Dutch Yorkshire pigs, tested on two stations under a restricted feeding regime.To investigate the environmental effects within test stations, different definitions of environmental effects were included separately in models for analysis of variance. Batch effects were significant (P < 0.001) for daily gain and feed conversion ratio, and explained 7–12% of the variance. Backfat measurements and ham + loin percentage were significantly (P < 0.05) influenced by month effects. Indications for an optimal environmental classification were shown only for daily gain and feed conversion ratio. For the carcass characteristics no balance could be found between chance and environmental fluctuations.The estimated heritabilities for daily gain, feed conversion ratio and ultrasonic backfatàt thickness were 0.18, 0.21 and 0.28, respectively, if averaged over the two breeds, and were lower than those reported in the literature for pigs on restricted feeding. A different genetic structure (only A.I. data were used) and the chosen definition of environmental effects may have contributed to these differences. The differences between the two breeds in heritability, especially for ham + loin percentage (h² = 0.34 for Dutch Landrace and h² = 0.75 for Dutch Yorkshire), may be the result of the selection against halothane-positive animals in the first breed.     

Occurrence of β-lactam-resistant Staphylococcus aureus in milk from primiparous dairy cows in the northeastern region of Brazil

Tropical Animal Health and Production - The objective of the current study was to isolate and identify Staphylococcus (S.) aureus strains resistant to beta-lactam antibiotics from primiparous...     

Seroprevalence and risk factors for leptospirosis in cattle,sheep, and goats at consorted rearing from the State of Piauí, northeastern Brazil

Leptospirosis is an endemic disease in Latin America, caused by pathogenic bacteria of the genus Leptospira. It is considered one of the main causes responsible for the negative economic impact on global livestock by causing reproductive problems. The research aimed to determine the prevalence of leptospirosis in cattle, sheep, and goats at consorted rearing in the micro-region of Teresina, Piauí state, northeastern Brazil, as well as to identify prevalent serovars and risk factors associated with seroprevalence. Serum samples were analyzed in 336 sheep, 292 goats, and 253 cattle using microscopic agglutination test (MAT). Overall, 378 samples were positive to MAT, with seroprevalence of 42.9%. The prevalences in cattle, sheep, and goats were 50.5, 40.5, and 34.6%, respectively. All herds presented at least one seropositive animal; the Hardjo/Wolffi serovar association was the most common in cattle and Icterohaemorrhagiae in goats and sheep. Beef production (OR?=?4.9), cattle herd over 35 animals (OR?=?4.0), feeding on pasture (OR?=?6.4), weir and/or stream as water source (OR?=?2.1), and no veterinary services (OR?=?2.9) were risk factors for cattle infection. For sheep, intensive management system (OR?=?5.3), suspended slatted facilities (OR?=?2.2), more than 20 sheep in reproductive age (OR?=?1.9), and absence of deworming (OR?=?3.5) were the risk factors, while for goats, the identified risk factors were sheep herd over 52 animals (OR?=?1.9) and no veterinary services (OR?=?1.8). We conclude that the infection was spreading in consorted herds in this region. Thus, it would be interesting and important to conduct educative activities to farmers on the economic impacts of this disease and the need of preventive and control strategies mainly focused on sanitary measures and animal handling.     

Evaluation of candidate genotype of leptin gene associated with fertility and production traits in Hardhenu (Bos taurus × Bos indicus) cattle

The present study was conducted on Hardhenu cattle to screen genomic region of leptin gene with an objective to find the association of genotypes with fertility and production traits. The association analysis with traits under study was analysed by least squares analysis of variance by taking SNPs genotype as fixed effects in the statistical model. The genotypic frequencies with respect to targeted loci g.92450765 G > A indicated that AG (0.54) genotype was highest in Hardhenu cattle. Chi-squared tests showed that g.92450765G > A SNP meet with the Hardy–Weinberg equilibrium (p > .05).The association analysis revealed significant association of genotypes with total milk yield (TMY) and 305 days milk yield (MY) (p < .05). Service period (SP) and calving interval (CI) were also found significantly associated with genotypes (p < .05). Whereas, lactation length (LL), dry days (DD) and age at first calving (AFC) did not divulge any significant association with genotype. The AG and GG genotypes were associated with higher milk yields as compared to AA genotype, indicating that allele G was associated with superior milk performance. However, AA genotyped cattle found to be favourable with SP, CI and artificial insemination (AI) per conception compared to AG and GG genotyped cows. Chi-square analysis revealed that genetic variants of g.92450765 G > A SNP of leptin gene differ significantly with regard to reproductive disorders incidence (p < .05). The frequency of GG genotype (88.89%) in the affected animal group was very high followed by AG. The animals with GG genotype were found to be more susceptible to reproductive disorders as suggested by the higher odd ratio value (16.00) in logistic model. These observations and their differential association with the fertility and production traits can be utilized as an aid to selection for genetic improvement of antagonistic traits in dairy cows.     

[The role of reproductive biology in SDGs] Global warming and cattle reproduction: Will increase in cattle numbers progress to global warming?

The livestock industry produces a large amount of greenhouse gases (GHG) that cause global warming. A high percentage of GHG emissions are derived from cattle and has been suggested to be a factor in global warming. With the global increase in the consumption of livestock products, the number of farm animals has increased. In addition, the reduction in productivity and reproductive capacity of cattle has resulted in accelerated GHG emissions. In a high-temperature environment, the pregnancy rate decreases, leading to an increase in animals that do not contribute to production. Consequently, GHG emission per unit product increases, thereby accelerating global warming. To reduce this environmental impact, it is important to improve the breeding efficiency of cattle by the use of reproductive technology and, thus, reduce the number of non-productive animals. Thus, reproductive biology plays a major role in mitigating global warming related to the livestock industry.     

Prevalence of Neospora caninum antibodies in cattle from Santarém, Pará, Brazil

Prevalence of anti-Neospora caninum antibodies was measured in serum samples randomly collected from dairy (40 cows from four farms) and beef cattle (120 animals from 12 farms) from the municipality of Santarém, Pará State, Brazil, calculated by using the Win Episcope 2.0 statistical program. The presence of anti-N. caninum antibodies was determined by indirect immunofluorescence-antibody test with a cut-off value of 1:100. We found that 13 farms (81.25%) showed infection rates above 10%, which indicates widespread distribution of N. caninum in the region. The frequency per animal was 19%. No difference was observed between the prevalence values in dairy and beef animals or between farms, which was probably due to the small number of dairy farms examined. The results confirm, for the first time, the presence of anti-N. caninum antibodies in cattle from Pará State and the necessity to further investigate the epidemiology of N. caninum in the Amazon region.     

Anthelmintic resistance in cattle nematodes in northwestern São Paulo State, Brazil

The present study was carried out in the northwestern region of S?o Paulo State, Brazil, to determine the anthelmintic resistance status in cattle naturally infected with gastrointestinal nematodes. The anthelmintics tested were levamisole phosphate (Ripercol, Fort Dodge), albendazole sulphoxide (Ricobendazole, Fort Dodge), ivermectin (Ivomec, Merial) and moxidectin (Cydectin, Fort Dodge), administered at the doses recommended by the manufacturers. From April 2002 to May 2004, 25 cattle farms were evaluated. On each farm, steers were divided into treatment and control (not treated) groups based on fecal egg counts (FEC). Between 7 and 10 days after the anthelmintics administration, fecal samples were collected from each animal for post-treatment FEC. Fecal cultures from each group were also prepared for larval identification. After treatment, mean FEC reduction (FECR) in treatment groups (compared with control groups) was assessed on each farm. FECR was lower than 90% on 23 farms after ivermectin treatment. On 19 farms, FECR of 100% was recorded following moxidectin treatment; on the remaining 6, FECR ranged from 90% to 97.2%. After albendazole treatment, FECR was higher than 90% on 20 farms and ranged from 47.4% to 84.6% on other 5. After levamisole treatment, FECR was higher than 90% on 23 farms and equal to 47.4% and 73.7% on other 2 farms. Results indicated the presence of resistant Cooperia spp. and Haemonchus spp., especially to ivermectin; on some farms, resistance to albendazole and levamisole was also observed.     

Postpartum reproductive failure in cattle: is the examination of gene expression in the endometrium a key to success?

High reproductive performance is required for successful management of dairy farms. After calving, especially endometritis is one of the main reasons for reproductive failure. However, subclinical endometritis remains undetected in many cases and causes a high financial loss. To elucidate the cellular processes in the endometrium, the acquisition of the gene expression will provide helpful information. In the literature, numerous cytokines and enzymes were discussed to play important roles in preparing the endometrium for implantation. This review gives an overview about our present understanding of the functions of cyclooxygenases 1 and 2 (COX-1/COX-2), tumor necrosis factor alpha (TNFalpha), the inducible nitric oxide synthase (iNOS), haptoglobin as well as the interleukins 1 and 6 (IL-1/IL-6). Their role is not only to regulate certain physiological processes in the bovine reproductive tract, but to act also as inflammatory mediators in infectious diseases. A better understanding of cellular processes may help to improve identification and treatment of postpartum reproductive failure.     

Wasting and mortality in beef cattle parasitized by Eurytrema coelomaticum in the State of Paraná, southern Brazil

A sporadic wasting syndrome affecting beef cattle herds parasitized by Eurytrema coelomaticum is described in the State of Paraná, southern Brazil. The disease was characterized by progressive weight loss, poor body condition despite plenty of good quality forage available, and death. Annual losses ranged from 1 to 3%. The clinical course of the disease varied from 2 to 10 months after the onset of the first clinical signs. At necropsy, one of the three distinct following patterns of lesions were observed: the pancreas was of normal size and color; small, shrunken, white and markedly and diffusely firm (fibrosis); or slightly enlarged and dark with a shriveled capsular surface. Myriads of leaf-shaped trematodes of the genus Eurytrema were packed inside multiple dilated ducts with thickened, whitish fibrous walls, or the flukes were embedded in the remaining pancreatic parenchyma. Microscopic findings included extensive loss of the pancreatic parenchyma with replacement fibrosis, intralesional flukes and eggs, and ductal hyperplasia. Inflammatory reaction varied from absent to severe with the presence of a granulomatous reaction around the trematode eggs. One affected animal had high plasma amylase concentration (1580U/L) suggesting exocrine pancreatic insufficiency. Glucose blood levels were not significantly increased. We suggest that diffuse and marked fibrosis of the pancreas induced by the presence of large amounts of pancreatic flukes is the cause of the sporadic cases of chronic wasting and death of cattle in this geographic area.     

Partition of sire effects for international sire evaluation in the presence of genotype×environment interaction

Both simulation and field data were analyzed to compare the current MACE (multiple-trait across-country evaluation) and a proposed partition model (MACE_P) for international sire evaluation in the presence of genotype–environment (GE) interaction. The partition model decomposes the sire effect into two components: constant effect that is stable genetically across countries and interaction effect that varies from country to country. Simulation results indicate that interaction effect was estimated more accurately by MACE_P when GE interaction is strong than when it is weak. The accuracy of estimating sire effects increased as GE interaction and/or heterogeneity of sire variances between countries lessened, indicating the importance of accounting for GE interaction and heterogeneous sire variances in the international genetic evaluation. A joint analysis of Japanese and the US Holstein populations reveals that the estimated interaction correlation (r_I) as a new measure of GE interaction was 0.924, suggesting little evidence of sire by country interaction for milk yield. A general formula was developed to convert the estimates of sire effects from MACE to MACE_P. Although MACE_P demands more computing resources than MACE, the use of this simple conversion formula would greatly reduce the computing requirements by MACE_P. Both constant and interaction effects estimated by MACE_P sums to the sire effect estimated by MACE. Sire (co)variances obtained as a sum of constant and interaction (co)variances estimated by MACE_P were very similar to those estimated by MACE. The partition of sire effect into the constant and interaction effects by MACE_P allows the indexing of these two component traits with different weights to maximize overall response in the presence of GE interaction.     

Comparison of tick resistance of crossbred Senepol × Limousin to purebred Limousin cattle

The comparison of resistance to natural tick infestation by Rhipicephalus microplus (Canestrini, 1887) of crossbred Senepol?×?Limousin and purebred Limousin cattle was investigated. The Senepol breed, originated from St Croix Island in the Caribbean is considered as a Bos taurus breed adapted to tropical conditions. Despite its B. taurus genetic background, it is believed to have a good tick resistance, but this resistance has never been assessed previously. Tick counts under natural infestation were carried out to investigate the difference of susceptibility between crossbred Senepol?×?Limousin and purebred Limousin cattle. Mixed-effect models were used to assess the effect of the breed on the number of ticks. Results show that Senepol?×?Limousin are five times less infested by ticks than purebred Limousin. These results underline the opportunity to use Senepol cattle for crossing with susceptible B. taurus breeds in tick infested areas, to combine tick resistance with beef production abilities.