Selection and use of a mathematical model to evaluate components of resistance to Phytophthora infestans in potato

Five models of general epidemics, spatially homogeneous, were all shown to fit well to disease progress data forPhytophthora infestans on a susceptible potato cultivar. The models were: the logistic equation, the paralogistic or Vanderplank equation, two models from medical epidemiology with similar complexity, and a slightly more complex model with explicit treatment of lesion expansion. The use of the models for analysing the sensitivity of disease progress to changes in resistance components is discussed. Sensitivity analysis of the most complex model, by varying components within their range of genetic variation, indicates lesion expansion and infection efficiency as the components offering the best perspectives for resistance breeding. Improving two components simultaneously reduces disease progress slightly more than additively, but not enough to add other components to the list of breeding objectives. Pitfalls in using models for component sensitivity analysis, in the form of erroneous model initializations, are discussed, including implications for the role of components in the development of natural epidemics and in resistance breeding trials.     

The effect of the presence of R-genes for resistance to late blight (Phytophthora infestans) of potato (Solanum tuberosum) on the underlying level of field resistance

The differential genotypes R₁, R₁₀ and R₁₁, as originally defined by Black, were crossed with R-gene-free cultivars and the progenies divided into two subpopulations comprising those which had inherited the R-gene and those which had not. The underlying level of field resistance of the two groups was compared in a field trial in which they were inoculated with an isolate that could overcome the relevant R-genes. The R-gene-bearing group was significantly ( P  < 0·001) more resistant than the R-gene-free group, with mean scores over four dates in 2000 of 4·86 and 4·09, respectively, on a 1–9 scale of increasing resistance, and of 4·10 and 2·35 on one date in 2001. However, the magnitude of the effect depended on the R-gene and the year of the trial. Data from a progeny of cv. Stirling (with an R-gene and a high level of field resistance) were examined and the same effect of an R-gene found. Fewer of the R-gene-bearing group of clones were highly susceptible, and more were resistant. The most resistant clones always bore the R-gene. It is concluded that increased resistance is conferred by the defeated R-gene or linked genes for field resistance.     

Population structure and host range of the potato late blight pathogen Phytophthora infestans in Peru spanning two decades

The genetic diversity of the late blight pathogen Phytophthora infestans infecting cultivated potato and alternative hosts growing in the vicinity of fields in the main potato-growing areas of the Peruvian Andes was characterized using collections from 1997–2013 as reference. The Peruvian P. infestans population, including previously collected and current isolates, consists of four clonal lineages (EC-1, US-1, PE-3 and PE-7) that belong to the A1 mating type and have been present in the country for decades. The first report of US-1 was in isolates collected between 1982 and 1986; meanwhile, EC-1 and PE-3 appeared for the first time in isolates from 1992 and PE-7 was found in 1997. The pathogen has a very broad host range among the solanaceous plants infecting cultivated potato, tomato, pear melon and several wild species. The solanaceous species growing in the vicinity of the potato fields sampled were identified and surveyed for late blight-like symptoms. Phytophthora infestans was isolated from nine wild species, including three new host species: Solanum zahlbruckneri, Solanum grandidentatum and Iochroma grandiflorum. There was no clear host specialization, but geographical substructuring was found as well as changes in the pathogen populations at the regional level. The clonal lineage EC-1, which is mostly resistant to metalaxyl, has complex virulence and contains a high level of subclonal variation, continues to dominate the population. Some multilocus genotypes of the EC-1 lineage were sampled in high frequencies and were found among the previously collected and new samples.     

Aggressiveness and host specificity of Brazilian isolates of Phytophthora infestans

The population of Phytophthora infestans in Brazil consists of two clonal lineages, US-1 associated with tomatoes and BR-1 associated with potatoes. To assess whether host specificity in these lineages resulted from differences in aggressiveness to potato and tomato, six aggressiveness-related epidemiological components – infection frequency (IF), incubation period (IP), latent period (LP), lesion area (LA), lesion expansion rate (LER) and sporulation at several lesion ages (SSLA) – were measured on detached leaflets of late blight-susceptible potato and tomato plants. Infection frequency of US-1 was similar on potato and tomato leaflets, but IF of BR-1 was somewhat reduced on tomato. Incubation period was longer on both hosts with US-1, although this apparent lineage affect was not significant. Overall there was no host effect on IP. On potato, BR-1 had a shorter LP (110·3 h) and a larger LA (6·5 cm²) than US-1 (LP = 162·0 h; LA = 2·8 cm²). The highest LER resulted when isolates of BR-1 (0·121 cm² h⁻¹) and US-1 (0·053 cm² h⁻¹) were inoculated on potato and tomato leaflets, respectively. The highest values of the area under the sporulation capacity curve (AUSC) were obtained for isolates of US-1 inoculated on tomato leaflets (6146) and for isolates of BR-1 on potato leaflets (3775). In general, higher values of LA, LER, SSLA and AUSC, and shorter values of LP were measured when isolates of a clonal lineage were inoculated on their original host than with the opposite combinations. There is evidence that there are quantitative differences in aggressiveness components between isolates of US-1 and BR-1 clonal lineages that probably contribute to host specificity of P. infestans populations in Brazil.     

Production, survival and infectivity of oospores of Phytophthora infestans

The formation of oospores of Phytophthora infestans was studied in tomato and potato crops and volunteer plants under field conditions, and in laboratory tests with leaf discs of potato cultivars differing in their level of race-nonspecific resistance. Oospores were readily detected in blight-affected tomato leaflets and fruits, and in leaflets of field crops and volunteer potato plants. Oospores extracted from blighted potato leaflets yielded 13 oospore-derived progeny. Oospores were also produced following inoculation of leaf discs of eight potato cultivars expressing different levels of race-nonspecific resistance with a mixture of sporangia of A1 and A2 isolates. The highest numbers of oospores were produced in cvs Bintje (susceptible) and Pimpernel (resistant), and the lowest in Nicola (intermediate resistance). The relationship between lesions per leaflet and oospore incidence, affected by varying A1 : A2 ratios, was explored using a simple mathematical model, and validated by comparing actual oospore production in leaflets with multiple lesions of the race-nonspecific-resistant potato clone Lan 22-21 with the predictions generated by the model. Survival of oospores was investigated after their incorporation in either a sandy or a light clay soil in buried clay pots exposed to the local weather conditions. Over 6 years these soils were regularly assessed for their infection potential using floating leaflets in a spore-baiting bioassay. Sandy and clay soils contaminated with oospores remained infectious for 48 and 34 months, respectively, when flooded. Infections of floating potato leaflets occurred within 84–92 h and ceased after 11 days. Soil samples remained infective if dried and re-flooded on two, but not more, occasions.     

Phytophthora infestans in a subtropical region: survival on tomato debris, temporal dynamics of airborne sporangia and alternative hosts

Little is known about inoculum dynamics of late blight caused by Phytophthora infestans in tropical/subtropical areas, particularly in Brazil. The objectives of the present study were to assess (i) the survival of the pathogen on stems, leaflets and tomato fruits, either buried or not in soil; (ii) the pathogenicity of P . infestans to mostly solanaceous plant species commonly found in Brazil that could act as inoculum reservoir; and (iii) the temporal dynamics of airborne sporangia. Phytophthora infestans survived in tomato plant parts for less than 36 days under greenhouse and field conditions. In greenhouse tests, pathogen structures were detected earlier on crop debris kept in dry than in wet soil conditions. Isolates of two clonal lineages of P. infestans , US-1 from tomato, and BR-1 from potato, were inoculated on 43 plant species. In addition to potato and tomato, Petunia  ×  hybrida and Nicotiana benthamiana were susceptible to the pathogen. Airborne inoculum was monitored with Rotorod and Burkard spore traps as well as with tomato and potato trap plants. Sporangia were sampled in most weeks throughout 2004 and in the first two weeks of 2005. Under tropical/subtropical conditions, airborne inoculum is abundant and is more important to late blight epidemics than inoculum from crop debris or alternative hosts.     

Influence of competition and host plant resistance on selection in Phytophthora infestans populations in Michigan, USA and in Northern Ireland

Competition between genotypes of Phytophthora infestans was studied by inoculating potato cultivars with differing susceptibility to late blight in field experiments over three years in Northern Ireland, UK, and Michigan, USA. Multiple isolates of six genotype groups of P. infestans were chosen from the local populations in both N. Ireland and Michigan for inoculation of separate field trials planted in 2003, 2004 and 2005. Four cultivars were used in each trial; two (susceptible cv. Atlantic and the partially resistant cv. Stirling) were common to both locations, whereas the two additional cultivars (with partial resistance to late blight) were cvs Santé and Milagro in N. Ireland and cvs Pike and Jacqueline Lee in Michigan. Single-lesion isolates of P. infestans were obtained from leaves at 1% level of infection, characterized using pre-assigned markers and re-assigned to their respective genotype groups. Extreme selection occurred within the population of genotypes of P. infestans in N. Ireland in each year, with different genotype groups dominating the infection of different cultivars. Selection was observed on all cultivars tested, but was greatest on the more resistant cultivars. Over the 3 years, all of the 114 isolates obtained from cv. Milagro belonged to a single group, whereas among the 118 isolates from cv. Atlantic all six groups were represented. By contrast, in Michigan, the US-8 genotype dominated infection in all cultivars in each year; only 12 of 374 isolates characterized belonged to other genotypes (11 US-14 and a single US-10 isolate).     

Production and Germination of Oospores of Phytophthora infestans (Mont.) de Bary in Morocco

One hundred and eight isolates of Phytophthora infestans were collected from infected potato and tomato crops in the middle-north of Morocco during 1997–2000. Pairings of these isolates with tester isolates of mating type A1 and A2 revealed that 60% of the isolates were mating type A2 (65/108) and 40% were mating type A1. After 10 days incubation at 20 °C and a 16-h photoperiod, approximately 25% and 18% of the oospores produced in-vitro germinated in potato soil extract and potato root extract, respectively. Oospores were observed in potato leaf tissues in pairings that were fertile in-vitro. Maximum production of oospores was obtained in potato leaves of cultivars that were moderately susceptible (Desirée, Nicola) after 10 days of incubation at 15 °C and a 16-h photoperiod. These results confirm the presence of P. infestans strains that are sexually compatible under Moroccan climatic conditions. Production of oospores constitutes a threat for these crops because of the occurrence of recombinants with new virulences which may be difficult to control and as a consequence survival of oospores in absence of the host plant in the soil.     

Stability of partial resistance in potato cultivars exposed to aggressive strains of Phytophthora infestans

Potato cultivars were evaluated for their resistance responses to aggressive strains of Phytophthora infestans in field and laboratory experiments. Analysis of variance revealed differential cultivar-by-isolate interactions for both foliar and tuber blight resistance. Differential responses occur as revealed by specific susceptibilities of cultivars to certain pathogen genotypes and changing rank order. In general, severity of late blight epidemics as observed in the haulms did not correlate well with foliar blight resistance ratings as presented in the National List of Recommended Potato Varieties. No significant correlation was found between tuber blight incidence under field conditions and the tuber blight rating in the National List. Also, there was no relation between the field and laboratory tuber blight resistance assessments. A significant association was demonstrated between late blight infection in the foliage and tuber blight incidence under field conditions. The presence of differential interaction, independent of R-gene-based resistance, indicates some adaptation of P. infestans to partial resistance and consequently adverse effects on the stability and durability of partial resistance to potato late blight.     

Development of a co-dominant SCAR marker linked to the Ph-3 gene for Phytophthora infestans resistance in tomato (Solanum lycopersicum)

Random amplified polymorphism DNA (RAPD) and bulk segregant analysis (BSA) approaches were used to characterize the molecular marker linked to the Phytophthora infestans resistance gene Ph-3 in tomato. A total of 800 RAPD primers were screened. One RAPD marker UBC#602 was identified to be tightly linked to the Ph-3 gene. The marker was successfully converted into a co-dominant sequence characterized amplified region (SCAR) marker. The SCAR marker SCU602 was used to analyze 96 F₂ progenies and fitted the expected 1:2:1 Mendelian segregation ratio. Forty one tomato inbred lines were screened using the SCAR marker in comparison with a reference marker linked to the Ph-3 gene and both markers gave the same results. SCU602 was further validated for association to resistance and its potential in MAS in 72 tomato lines and cultivars. The marker identified three genotypes harbouring the resistance allele. This SCAR marker can be used in breeding programs for the selection of the Ph-3 gene for Phytophthora infestans resistance.     

Characterization of some Asian isolates of Phytophthora infestans

A total of 401 isolates of Phytophthora infestans were collected from eight Asian regions (Korea, India, Taiwan, Indonesia, Thailand, Nepal, China and Japan) between 1992 and 2000 – 318 from potato and 83 from tomato. The isolates were analysed for mating type, metalaxyl resistance, RG57 fingerprinting, mitochondrial DNA (mtDNA) haplotype and the polymorphism of three allozyme loci, i.e. glucose-6-phosphate isomerase ( Gpi ), peptidase ( Pep ) and malic enzyme ( Me ). The isolates were multilocus-genotyped based on RFLP (RG57) fingerprint, dilocus allozyme genotype, mtDNA haplotype and mating type. Twenty multilocus genotypes were identified among 125 isolates. Of these genotypes, 14 had not been previously reported. Some of the multilocus genotypes were common to isolates from several geographical regions, suggesting migration. The metalaxyl-resistant isolates belonged to the multilocus genotypes JP-1, JP-2, and JP-3. Multilocus genotypes coexisting in a single field were found in following regions: Thailand (1994), central China (1996), Nepal (1997) and Japan (1998 and 2000). The possible origins of certain genotypes are discussed, including the possibility of sexual recombination within the P. infestans populations in Nepal and perhaps Thailand.     

Resistance to metalaxyl in Phytophthora infestans in the Netherlands

Two hundred and twenty two isolates ofPhytophthora infestans from infected potato foliage or tubers, obtained in 1981 from different potato fields in various regions of the Netherlands, were tested for their ability to infect potato leaf discs floating on solutions of metalaxyl of various concentrations. Isolates were designated as resistant to metalaxyl when sporulation occurred at a concentration of 1 g ml^–1 or higher.Forty-one isolates appeared to be resistant. Thirty-five of the resistant isolates and 29 sensitive ones originated from three areas involving circa 15% of the total Dutch potato acreage. In these areas 28% of the fields sampled were metalaxyl-treated and 78% of these fields yielded resistant isolates. Only one of the three areas had a history of metalaxyl resistance in 1980. Six metalaxyl-resistant and 152 sensitive isolates were found in potato fields in other areas including those with major problems of resistance in 1980. All of four old potato cull piles sampled in the latter areas yielded metalaxyl-resistant isolates and two of these sites had possibly been inoculum sources for nearby potato fields. Only 9% of the fields sampled in these areas were metalaxyl-treated and none of these yielded a metalaxyl-resistant isolate.The data are compatible with the idea that infected seed potatoes were the major source of the incoculum that initiated the early and severe late blight epidemic in 1981 in the Netherlands. The severity has been enhanced by late-blight-conducive weather conditions during the emergence of the crop and its early stages of development, when fungicides had not yet been applied. Old potato cull piles are assumed to have been less important in starting the 1981 epidemic.Apparently, infected seed potatoes carried predominantly metalaxyl-sensitive strains, which explains the prevalence of metalaxyl-sensitive strains in most of the fields. In 1980, the seed potato crop had been harvested before the problem of metalaxyl-resistance surfaced. Hence, it might be assumed that infection of seed potatoes, favoured by late-blight-conducive weather in 1980, had been caused by metalaxyl-sensitive strains. Evidence that seed potatoes could also carry metalaxyl-resistant strains was obtained in two cases. It might explain their early occurrence in fields located in areas without a history of metalaxyl resistance in 1980 and the rapid build-up of a resistant population in a number of metalaxyl-treated fields.Development of resistance in potato fields, which were under heavy disease pressure after spraying with a mixture of metalaxyl and mancozeb, could not be proven definitely. In one experimental field the seed tubers very likely carried metalaxyl-resistant strains, which initiated an epidemic, and in a second field the influx of resistant strains from elsewhere could not be completely ruled out. In the latter field spraying the mixture at a two-week interval could not effectively control the disease. In this field a considerable degree of tuber infection by metalaxyl-resistant strains was noticed.No correlation existed between the behaviour of a particular strain towards metalaxyl and the genes for virulence present. Among a total of 79 isolates, the race of which has been identified, 23 different races were found. Race 1.3.4.7.10.11 was most frequently found, followed by race 1.3.4.7.11. Among 37 resistant isolates 10 different races could be identified.Samenvatting Gedurende de zomer en najaar van 1981 werden 222 veldisolaten vanPhytophthora infestans met behulp van een drijftoets getoetst op resistentie tegen metalaxyl. Per perceel werd meestal één isolaat, hetzij afkomstig van een door de aardappelziekte aangetast blad, hetzij van een zieke knol, getoetst.Eén en veertig isolaten bleken resistent te zijn. Van deze 41 waren er 35 afkomstig uit West Brabant, de Hoekse Waard en Oost Brabant/Noord Limburg, waar ongeveer 15% van het totale aardappelareaal in Nederland is gelegen. Daarnaast werden uit deze gebieden 29 gevoelige isolaten verkregen. Van de bemonsterde percelen uit de drie genoemde gebieden was 29% één- of tweemaal met metalaxyl behandeld, meestal in combinatie met andere middelen. Uit 78% van de aldus behandelde percelen werd een resistant isolaat verkregen. In de genoemde gebieden werden in 1980 alleen in Oost-Brabant/Noord Limburg problemen ondervonden van metalaxylresistentie.In percelen in overige gedeelten van Nederland, waar in 1980 algemeen metalaxylresistentie werd waargenomen, werden in totaal slechts zes metalaxyl-resistente en 152 gevoelige isolaten aangetroffen. Geen enkel van de met metalaxyl bespoten percelen (9% van het aantal bemonsterde percelen) leverde hier een resistent isolaat op. Uit een viertal aardappelafvalhopen in deze gebieden waarop de aardappelziekte voorkwam, werden metalaxyl-resistente stammen verkregen en twee ervan hadden waarschijnlijk een naburig perceel besmet.De resultaten van het onderzoek en de waarnemingen in de percelen wijzen erop dat de vroege en hevige epidemie van de aardappelziekte in 1981 is veroorzaakt door besmet pootgoed waaruit secundair zieke planten zijn ontstaan. Daarnaast werd het uitbreken van de epidemie vooral begunstig door de voorPhytophthora gunstige weersomstandigheden gedurende de periode eind mei tot half juni en het feit dat de eerste bespuiting te laat werd uitgevoerd, hetzij door overmacht, hetzij door het te traag reageren op de waarschuwingen via de radio.In 1980 hebben voornamelijk metalaxyl-gevoelige stammen het pootgoed kunnen besmetten, hetgeen verklaarbaar is uit het feit dat in dat jaar de problemen met metalaxylresistentie pas werden waargenomen nadat het loof van het pootgoed was vernietigd. In een tweetal gevallen zijn evenwel aanwijzingen verkregen dat pootgoed ook besmet kon zijn met resistente stammen. Een dergelijke besmetting is waarschijnlijk ook de verklaring voor het op grote schaal voorkomen van resistente stammen in West Brabant en de Hoekse Waard na een eenmalige toepassing van metalaxyl.In een tweetal proefvelden, waarvan er één was gelegen in Zuid-Flevoland en het andere te Heelsum, is het ontstaan van een resistante populatie bestudeerd bij een twee-wekelijkse toepassing van een mengsel van metalaxyl en mancozeb. Pootgoed, gebruikt in het op praktijkschaal uitgevoerde experiment in Zuid-Flevoland, bleek waarschijnlijk besmet te zijn met metalaxyl-resistente stammen, zoals op 1 juli werd vastgesteld in een onbehandeld gedeelte van het perceel. Op het behandelde gedeelte bleek het mengsel de ontwikkeling van de ziekte aanzienlijk te vertragen; evenwel werd na 16 juli een wekelijkse bespuiting met een maneb/fentin acetaat-bevattend produkt uitgevoerd voor een zo goed mogelijk ziektebestrijding.Op het in Heelsum gelegen proefveld werd op 5 augustus de ziekte het eerst waargenomen in het behandelde gedeelte, nadat de planten in het onbehandelde gedeelte, ten gevolgen van een doelbewuste inoculatie met gevoelige stammen op een naast gelegen aardappel-selectieveld, reeds voor meer dan 50% waren aangetast. Uit aangetaste bladeren van het behandelde gedeelte konden metalaxyl-resistente stammen worden geïsoleerd. In de loop van augustus bleek het metalaxyl/mancozeb-mengsel niet in staat verdere uitbreiding van de ziekte tegen te gaan en trad knolinfectie op. Begin september werden uitsluitend resistente stammen aangetroffen.Geen enkel verband kon worden vastgesteld tussen het optreden van metalaxyl-resistentie en het voorkomen van een bepaald fysio van de schimmel. Op een totaal van 79 isolaten konden 23 verschillende fysio's worden geïdentificeerd. Het fysio 1.3.4.7.10.11 werd de meeste keren gevonden, gevolgd door fysio 1.3.4.7.11. Tien verschillende fysio's werden aangetroffen onder de 37 getoetste metalaxyl-resistente isolaten.     

Genetic diversity and host differentiation among isolates of Phytophthora infestans from cultivated potato and wild solanaceous hosts in Peru

To test the hypothesis that isolates of Phytophthora infestans attacking wild Solanaceae exhibit specialization for particular host species, 115 isolates of P. infestans were collected from cultivated potatoes, nontuber-bearing Solanum spp. of the Basarthrum section and wild tomatoes from five departments in the northern and central highlands of Peru, and characterized using several neutral markers. All isolates belonged to one of four clonal lineages described previously in Peru: EC-1, US-1, PE-3 and PE-7. There was a strong association of three lineages with host species: PE-3 was only isolated from cultivated potato, while PE-7 and US-1 were only isolated from nontuber-bearing Solanum spp. ( Basarthrum section and wild tomatoes). EC-1 was isolated from all host groups sampled. A subset ( n  = 74) of the isolates was evaluated for metalaxyl resistance. High levels of resistance were found almost exclusively in EC-1 and PE-3, while US-1 and PE-7 isolates were generally sensitive. In a detached-leaf assay for lesion diameter using five EC-1 isolates from S. caripense and seven EC-1 isolates from cultivated potato, there was a significant interaction between isolate origin and inoculated host, caused by higher aggressiveness of EC-1 from cultivated potato on its host of origin. In a comparison of EC-1 (seven isolates from cultivated potato) and US-1 (three isolates from S. caripense ), each pathogen lineage was more aggressive on its original host species, causing a highly significant interaction between isolate origin and inoculated host. Wild tomatoes and nontuber-bearing Solanum spp. harbour several pathogen lineages in Peru and could serve as reservoirs of inoculum that might contribute to epidemics on potato or tomato. Potential risks associated with the use of wild Solanum hosts as sources of resistance to P. infestans are discussed .     

番茄抗晚疫病Ph-3基因RAPD标记 的克隆与CAPS标记的建立

目前,番茄晚疫病(Phytophthora infestans)在世界各番茄主产区普遍发生,并造成严重的经济损失,已经成为番茄生产的主要障碍之一.防御番茄晚疫病最有效的方法是培育抗病品种.依靠常规方法耗时、耗力,同时由于人为鉴定标准的差异,会直接影响鉴定结果,延长育种周期,分子标记技术的发展为解决此问题提供了可能.分子标记可被用于在苗期进行大量的抗病鉴定,不受时间、地域的限制,从而加速育种工作进程[1].Qiu等[2]已找到1条与抗晚疫病Ph-3基因连锁的RAPD标记,本研究旨在将此RAPD标记转化为稳定的CAPS标记,为抗晚疫病分子辅助选择育种(MAS)奠定良好的基础.     

Sensitivity of Phytophthora infestans to flumorph: in vitro determination of baseline sensitivity and the risk of resistance

The sensitivity of 127 Phytophthora infestans isolates to flumorph was determined in 2003 and 2004. The isolates originated from two geographical regions and showed similar levels of sensitivity in both years. Baseline sensitivities were distributed as a unimodal curve with EC₅₀ values for growth of mycelia ranging from 0·1016 to 0·3228  µ g mL⁻¹, with a mean of 0·1813 (± 0·0405) µ g mL⁻¹. There was no cross-resistance between flumorph and metalaxyl. Laboratory studies were conducted to evaluate the risk of P. infestans developing resistance to flumorph. Mutants resistant to metalaxyl or flumorph were obtained by treating mycelium of wild-type isolates with ultraviolet radiation. Metalaxyl-resistant mutants were obtained with a high frequency and exhibited resistance factor values (EC₅₀ resistant/EC₅₀ sensitive phenotypes) of more than 100, while flumorph-resistant mutants were obtained at much lower frequencies and had very small resistance factors (1·5–3·2). There was cross-resistance between flumorph and dimethomorph, but not with azoxystrobin or cymoxanil. Most flumorph-resistant mutants showed decreases in hyphal growth in vitro and in sporulation both in vitro and on detached leaf tissues. These studies suggested that the risk of resistance developing was much lower for flumorph than metalaxyl. However, as P. infestans is a high-risk pathogen, appropriate precautions against resistance development should be taken.     

Evaluation of foliar resistance in potato to Phytophthora infestans based on an international field trial network

During the period 2000–03, local potato cultivars in Estonia, Latvia, Lithuania, Poland and Denmark were tested for foliar resistance to Phytophthora infestans (late blight) in an international field trial network. Four standard cultivars were included in the trials: Sava, Oleva, Danva and Kuras. Primary disease-assessment data were entered into a common database, and parameters from the disease progress curves were calculated and made available on interactive web pages. A regression model, using relative area under disease progress curve (RAUDPC) values for cv. Oleva as a reference, was developed for the estimation of 1–9 scale values, where 1 = most susceptible. Standard deviations for the estimated 1–9 scale values and a nonparametric rank stability analysis of RAUDPC were used to evaluate the stability of resistance of the cultivars. Overall, the results showed stability of resistance for cvs Sava, Oleva and Danva, but not for Kuras. Use of the Internet-based Web-Blight service in this study facilitated comparison of results among countries for the level and stability of resistance. The estimated 1–9 scale values were similar to, or slightly lower than, those from official cultivar lists or from the European Cultivated Potato Database, especially for the more resistant cultivars. Possible reasons for discrepancies from different sources and locations are discussed. It is concluded that RAUPDC and the derived 1–9 scale values are useful for ranking cultivars for resistance to P. infestans , but this information is not detailed enough for use in a decision support system for late blight control.     

Inoculum Sources and Genotypic Diversity of Phytophthora infestans in Southern Flevoland,The Netherlands

Genotypic changes in populations of Phytophthora infestans in Southern Flevoland (150km²) were analysed by characterising isolates from potato refuse piles, conventional and organic potato fields, and potatoes and tomatoes in allotment gardens for mating type (1712 isolates) and DNA fingerprint pattern using probe RG57 (1048 isolates). The overall percentages of genotypes (and of isolates) that were A2 varied from 32 (4) in 1994 to 45 (56) in 1996. Among the 1048 isolates 170 different genotypes were identified, of which 138 (81%) were rare (i.e., detected in only one sampling site in the research area during 1993–1996). Many rare genotypes were encountered in organic potato fields and in allotment gardens. In 1994 and 1995, four genotypes were abundant. The highest percentages of isolates with these common genotypes were encountered in refuse piles and conventional potato fields. The common genotypes were nearly absent in 1996, suggesting that the population may have passed through a bottleneck at the transition from 1995 to 1996. The Shannon index of genotypic diversity was high in allotment gardens and in organic potato fields. For the total populations the normalised Shannon index of genotypic diversity increased from 0.34 in 1994, with weather favourable to late blight, to 0.61 in 1996, with unfavourable weather. The high numbers of rare genotypes detected every year indicate that oospores may act as an infection source in commercial potato fields. However, refuse piles were identified as the most important infection sources for commercial fields in 1994 and 1995. In 1996 disease in commercial organic fields was probably initiated by a few genotypes originating from seed tubers. In allotment gardens oospores were probably the most important infection source.     

Severe outbreaks of late blight on potato and tomato in South India caused by recent changes in the Phytophthora infestans population

Late blight, caused by Phytophthora infestans, has emerged as the most destructive disease of potato and tomato in South India since 2008. One hundred and fifty‐seven isolates of Phytophthora infestans, 63 from potato and 94 from tomato, were collected from major potato and tomato production areas of South India between 2010 and 2012. Their phenotypic and genotypic characteristics were determined and compared with reference isolates. Isolates were characterized based on mating type, in vitro metalaxyl sensitivity, mitochondrial DNA haplotype, RG57 DNA fingerprinting patterns, SSR markers and aggressiveness on potato and tomato, in order to monitor population changes in P. infestans. All isolates were A2 mating type, metalaxyl resistant, mtDNA haplotype Ia and had RG57 and SSR fingerprints almost identical to the 13_A2 clonal lineage reported in Europe. Variation at the D13 and SSR4 loci allowed discrimination of minor variants, designated as 13_A2_3, 13_A2_3b, 13_A2_3c and 13_A2_1. A comparison of the lesion diameters caused by 157 isolates on detached leaflets of three potato and tomato cultivars showed all isolates to be equally aggressive, confirming that the same clonal population is infecting both hosts. This study demonstrates that the 13_A2 lineage was responsible for severe late blight outbreaks on potato and tomato in South India and has replaced the prior population represented by the US‐1 and other genotypes. Revised management strategies will be required to combat this destructive 13_A2 clonal lineage and monitoring of the population across other potato‐ and tomato‐growing regions of India is warranted.     

Stability of resistance to Phytophthora infestans in potato: an international evaluation

Ten institutions in nine countries joined together to test the stability of resistance of 14 potato genotypes to the oomycete pathogen Phytophthora infestans in three separate trials. Seven of the genotypes were tested in one trial involving seven locations, and all 14 were tested in two subsequent trials, each involving eight locations. Stability of resistance was tested with nonparametric tests and with an additive main effects and multiplicative interaction (AMMI) model. Overall, resistance to P. infestans was robust; resistant genotypes were consistently resistant in all locations and trials. The nonparametric analysis indicated that specific genotypes were basically stable across sites for resistance. In trial 3, the Z statistic for overall stability was significant at 0·05%, indicating a significant level of interaction across the trial, but there were no significant interactions for specific genotypes in this trial. The genotype by environment (G × E) effect of the AMMI model was highly significant in both trials, but the mean square of G × E was less than 10% of the genotype effect in each trial. The first two principal components (PCA1 and PCA2) of the AMMI analyses together explained 75 and 80% of the interaction effects in trials 2 and 3, respectively. Based on both nonparametric and AMMI analyses, Ecuador and Argentina were locations of relatively high interaction effects for both trials 2 and 3, although in Ecuador this interaction was not associated with any particular potato genotype. Other locations also had high interaction effects, but these occurred in only one trial. The genotypes Chata Blanca and, to a lesser extent, Torridon were relatively unstable in trials 2 and 3, but in the case of Torridon, resistant, this did not represent a significant loss of resistance.