Spatial distribution of foot-and-mouth disease in Pakistan estimated using imperfect data

We estimated the spatial distribution of foot-and-mouth disease (FMD) in Pakistan; we used a probability co-kriging model and the number of FMD outbreaks reported between 1996 and 2000 by Pakistan to the Office International des Epizooties. We used a k-Bessel model and small-ruminant and human densities as surrogate covariates for the population at risk and for livestock markets and movements, respectively. Compared to no or only one covariate, the co-kriging model with both densities provided the best fit to independently obtained data on the spatial distribution of virus isolations (P = 0.57). The estimated probability of an FMD outbreak per 25 km² cell ranged from 0.017 to 0.812, with the maximum relative probability of 47.8 (0.812/0.017). Areas with the highest relative probability of having an FMD outbreak were located in the Punjab region; this is a major animal-production area located along a traditional international animal-trade route.     

Experimental studies with foot-and-mouth disease virus type Asia-1, responsible for the 2005 epidemic in China

This study was carried out to investigate the biological characteristics of the foot-and-mouth disease (FMD) virus strain Asia-1 China/2005, which is responsible for the 2005 epidemic in China. The result showed that this strain is not host restricted, and could not only cause FMD in cattle and sheep but also in pigs by either inoculation or direct contact.     

Sequence analysis of the protein-coding regions of foot-and-mouth disease virus O/HK/2001

The nucleotide sequence of the protein-coding region of foot-mouth-disease virus (FMDV) strain O/HK/2001 was determined and compared with the sequences of other FMDVs that were registered in GenBank. The protein-coding region was 6966 nucleotides in length and encoded a protein of 2322 amino acid residues. Comparison of the nucleotide sequence and its deduced amino acid sequence with those of other isolates indicated that O/HK/2001 belonged to the Cathay topotype. A genomic coding region nucleotide sequence phylogenetic tree of several FMDV-O isolates showed that O/HK/2001 was most closely related to FMDV isolates found in Taiwan during 1997, and especially shared significant similarity to HKN/2002, suggesting that the virus causing outbreaks in Hong Kong was genetically most-closely related to that causing an outbreak of type O in Taiwan. Mutations in O/HK/2001 were revealed, including frequent substitutions in the VP1 and L proteins, and deletions involving 10 amino acid residues in the 3A protein. This study was undertaken to assess the regional variation of prevalent FMDV type O viruses and to establish a sequence database for FMDV molecular epidemiological investigation.     

6株猪O型口蹄疫病毒VP1基因的克隆与序列分析

根据口蹄疫病毒（FMDV）VP1基因的序列，设计并合成了2对用于扩增VP1基因的引物。从组织中提取总RNA，首先用P1、P2引物对6株猪。型口蹄疫病毒进行RT—PCR扩增，获得1000bp的片段；再用P3、P4引物进行巢式PCR扩增，结果获得850bp的片段。将850bp的片段克隆到pMD18—-T载体中，通过PCR鉴定，将阳性重组质粒进行测序并分析。结果发现6株FMDV的核苷酸同源性为80．2％～99．4％，其推导的氨基酸序列同源性为86．9％～99．5％；构建遗传发生树，发现6株FMDV属于两个不同的基因型，其中的Shunde00、Sihui01、Shenzhen99、Fushan01株属一个基因型（与Hongkong93、广东86分离株属同一基因型）；Guangzhou99、Shenzhen00株属另一个基因型（与UKG-12—2001株、JPN2000株属同一基因型）。通过对口蹄疫病毒VP1基因的测序与分析，了解其变异情况，为科学地防控FMD提供分子水平的依据。     

A survey to investigate movements off sheep and cattle farms in New Zealand,with reference to the potential transmission of foot-and-mouth disease

AIM: To quantify the numbers and extent of movements off sheep and cattle farms in New Zealand, in order to construct more realistic simulation models to investigate how infectious diseases such as foot-and-mouth disease (FMD) might spread.

METHODS: Farmers from 500 randomly selected farms, comprising 100 from each of the following sectors, viz beef, dairy, grazing/dairy heifer rearing, sheep, and mixed sheep and beef, were asked to fill in diaries in which they recorded the movements of all animals, products, people, vehicles and equipment coming on to or leaving their farms during two separate 3-week periods, representing relatively ‘busy’ and ‘quiet’ times of the year with respect to livestock movements. Where possible, the destination of each movement was identified and geo-coded, to allow the distance travelled to be calculated. Each movement was then classified according to the risk of transfer of FMD virus (FMDV), should the disease have been present on the study farm at the time of the movement. The data were then analysed to establish movement frequencies and distributions of distances travelled, by the different pastoral livestock sectors.

RESULTS: Two hundred and seventeen farmers returned one or more diaries. One hundred and ninety-three farmers completed a Busy-period diary, recording a total of 12,052 movements off their farms, a crude average of 62.4 per 3-week period, or 2.97 per day. Of these, 4.0% involved the transport of livestock, equating to 0.12 livestock consignments per day. In contrast, 186 Quiet-period diaries were returned, recording a total of 10,885 movements off, representing a crude average of 58.5 during the 3-week period, or 2.78 per day. Of these, 2.1% involved livestock, equating to 0.06 livestock consignments per day. The mean and median distances travelled during the Busy periods were 30.9 km and 13.1 km, respectively (range 0–1,167 km). In comparison, the mean and median distances travelled during Quiet periods were 41.3 and 14 km, respectively (range 0.4–1,203 km).

CONCLUSIONS: People, vehicles, livestock and other items can travel off pastoral livestock farms in New Zealand to other farms either directly or via saleyards over extensive distances. This has implications for the potential spread of infectious diseases such as FMD. Movement parameters intended for use in the InterSpread Plus inter-farm simulation model of FMD were established, which will facilitate the prediction of likely spread and efficacy of controls in the unlikely event of a real-life outbreak.     

Asia1型FMDV非结构蛋白3A基因的克隆、表达与抗原性鉴定

为了研究Asia1型口蹄疫病毒(FMDV)非结构蛋白3A的抗原性,试验对Asia1型口蹄疫病毒非结构蛋白3A基因进行扩增、亚克隆及测序,将3A克隆至表达载体pET-32a(+)中,选取阳性克隆转化Rosetta(DE3)pLysS大肠杆菌感受态细胞,用IPTG诱导表达和纯化3A蛋白,并进行SDS-PAGE鉴定与Western-blot分析。结果表明:在大肠杆菌中成功地表达了3A蛋白,表达的目的蛋白能与Asia1型FMDV阳性血清发生特异性反应。说明非结构蛋白3A具有较好的抗原活性。     

Evaluation of cross-protection against three topotypes of serotype O foot-and-mouth disease virus in pigs vaccinated with multi-epitope protein vaccine incorporated with poly(I:C)

Epitope-based vaccines are always questioned for their cross-protection against the antigenically variable foot-and-mouth disease virus (FMDV). In this study, we proved the cross-protection effect of a multi-epitope vaccine incorporated with poly(I:C) against three topotypes of O type FMDV. A total of 45 naïve pigs were vaccinated with different doses of multi-epitope protein vaccine incorporated with poly(I:C). At 28 days post-vaccination, 45 vaccinated and 6 unvaccinated control pigs (two pigs for each group) were challenged with three topotypes of virulent O type FMDV, namely, O/Mya/98 (Southeast Asia topotype), O/HN/CHA/93 (Cathay topotype) and O/Tibet/CHA/99 (PanAsia topotype) strains. All unvaccinated pigs developed generalised FMD clinical signs. Results showed that all pigs (n = 15) conferred complete protection against the O/Mya/98 and O/HN/CHA/93 FMDV strains, 11 of which were protected against the O/Tibet/CHA/99 FMDV strain. The 50% protective dose values of the vaccine against the O/Mya/98, O/HN/CHA/93 and O/Tibet/CHA/99 FMDV strains were 15.59, 15.59 and 7.05, respectively. Contact challenge experiment showed that transmission occurred from the donors to the unvaccinated but not to vaccinated pigs. These results showed that vaccination with multi-epitope protein vaccine incorporated with poly(I:C) can efficiently prevent FMD in pigs.     

Simulation of foot-and-mouth disease spread within an integrated livestock system in Texas, USA

We used a simulation study to assess the impact of an incursion of foot-and-mouth disease (FMD) virus on the livestock industries in an 8-county area of the Panhandle region of Texas, USA. The study was conducted in a high-density livestock area, with an estimated number of cattle on-feed of approximately 1.8 million. We modified an existing stochastic, spatial simulation model to simulate 64 scenarios for planning and decision-making. Our scenarios simulated four different herd types for the index herd (company feedlot, backgrounder feedlot, large beef, backyard) and variations in three mitigation strategies (time-of-detection, vaccine availability, and surveillance during disease control). Under our assumptions about availability of resources to manage an outbreak, median epidemic lengths in the scenarios with commercial feedlot, backgrounder feedlot, large beef and backyard index herd types ranged from 28 to 52, 19 to 39, 18 to 32, and 18 to 36 days, respectively, and the average number of herds depopulated ranged from 4 to 101, 2 to 29, 1 to 15 and 1 to 18, respectively. Early detection of FMD in the index herd had the largest impact on reducing (13–21 days) the length of epidemics and the number of herds (5–34) depopulated. Although most predicted epidemics lasted only 1–2 months, and <100 herds needed to be depopulated, large outbreaks lasting 8–9 months with up to 230 herds depopulated might occur.     

Serosurveillance of foot-and-mouth disease in sheep and goat population of India

Serological investigation to detect foot-and-mouth disease (FMD) virus circulation in the domestic small ruminant population of India was conducted. A total of 4407 and 4035 serum samples from sheep and goats, respectively were collected at random covering majority of the states across the country during 2010–2012. These samples were analyzed for antibodies against the non-structural proteins (NSP) of FMD virus in an indirect 3AB NSP ELISA and against the structural proteins (SP) in a liquid phase blocking (LPB) ELISA. A total of 20.35% sheep and 13.60% goats were found to be positive for 3AB NSP antibodies providing a serological evidence of extensive viral activity. In LPB ELISA, only 4.54% sheep and 6.27% goats were found to have protective antibody (log₁₀ titre of ≥1.8) against all three serotype strains in the vaccine, which correlates with “no or sparse vaccination” scenario in these species in the country. Hence, to check silent amplification and dissemination of virus in a mixed farming set up, small ruminants may be brought under the ambit of routine vaccination and surveillance programmes.     

Risk factors for herdsman-reported foot-and-mouth disease in the Adamawa Province of Cameroon

We analysed responses from 147 Fulani herdsmen to a questionnaire about cattle herd-level risk factors for foot-and-mouth disease (FMD) in the previous year. The study used a cross-sectional design with a stratified, two-stage random sample of cattle herds in the Adamawa Province of Cameroon. The questionnaire was pre-tested at a local cattle market before a final version was translated into Foulfoulde (the local Fulani dialect). Variables were screened using a univariable analysis and logistic multiple-regression models were developed in a forward-selection process.

Fifty-eight percent (50–65; 90% CIs) of herdsmen reported FMD in their herd in the previous 12 months. Important risk factors for FMD in the previous 12 months included going on transhumance (OR = 2.6), buying cattle from markets (OR = 2.2), mixing of herds at watering points (OR = 2.4), feeding cotton-seed cake (OR = 3.3), buffalo near the herd (OR = 2.2) and administrative division. For the subset of herds that went on transhumance, coming in contact with an FMDV-diseased herd while on transhumance was the strongest factor (OR = 16).     

Diagnosis and screening of foot-and-mouth disease

Foot-and-mouth disease (FMD) diagnostic methods are reviewed. As the presence of clinical signs alone is inconclusive, laboratory diagnosis should always be carried out. The presence of FMD virus can be demonstrated by cell culture isolation, complement fixation test, ELISA or the more recent polymerase chain reaction (PCR) method. Serological diagnosis is also a valuable tool. The virus neutralization test has been replaced by ELISA and the antibody response to some viral non-structural proteins allows to discriminate between vaccinated and infected animals on a herd basis. More rapid and accurate tests as well as an earlier detection system in preclinical state are still needed.

Résumé

Les différentes méthodes de diagnostic de la FA (fièvre aphteuse) sont exposées. Le recours au laboratoire est indispensable; la seule présence de signes cliniques ne permettant pas d'établir le diagnostic. Le virus peut être mis en évidence par isolement en culture cellulaire, par le test de fixation du complément, l'ELISA ou la technique récente de polymérisation en chaine (PCR). La recherche des anticorps est aussi reconnue comme outil diagnostic. Le test de séroneutralisation a été supplanté par l'ELISA et la réponse anticorps contre certaines des protéines virales non structurales permet la différenciation entre troupeaux vaccinés et troupeaux infectés. Des tests plus rapides et précis, la possibilité de détecter le virus lors de la phase préclinique seraient d'utilité certaine.     

Predictions for the timing and use of culling or vaccination during a foot-and-mouth disease epidemic

First-fortnight incidence (FFI) is a modelling parameter that can be used to predict both the prevalence and duration of a foot-and-mouth disease (FMD) epidemic at regional and national levels. With an indication of how long an epidemic may last by the end of week two, it becomes possible to estimate whether vaccination would be economically viable from the start of an epidemic. Where FFI indicates that an epidemic is unlikely to last for as long as an export ban on agricultural produce, it may be inappropriate to implement a policy of 'vaccination to live'. Alternatively where FFI indicates that an epidemic will equal or exceed the ban length, then the benefits of vaccination should be considered at an early stage, during or after the first fortnight. Since blanket vaccination of the national or regional herds and flocks would be both costly and heighten the risk of producing carrier animals, targetting vaccination through risk assessment becomes useful.     

Genome analysis and development of infectious cDNA clone of a virulence-attenuated strain of foot-and-mouth disease virus type Asia 1 from China

The RNA genome sequence of the rabbit passage-attenuated strain of foot-and-mouth disease virus (FMDV) Asia 1, ZB/CHA/58(att), was determined to be 8165 nt in length excluding the poly(C) tract in the 5′ UTR and the poly(A) tail at the 3′ end. ZB/CHA/58(att) was most similar to the vaccine strain Asia 1/YNBS/58 in genome sequence and there were no deletions or insertions within the deduced polyprotein between ZB/CHA/58(att) and YNBS/58, but there were a total of 25 substitutions at the amino acid level and an extra 19-nt stretch in the 5′ UTR was found in ZB/CHA/58(att). An infectious full-length cDNA clone of ZB/CHA/58(att) was developed. Infectious virus could be recovered in BHK-21 cells transfected with the synthetic viral RNA transcribed in vitro. The plaque morphology, growth kinetics and antigenic profile of the infectious clone-derived virus (termed tZB) were indistinguishable from those induced by the parental virus. Furthermore, the virulence properties of ZB/CHA/58(att) and tZB were found to be highly similar in the mouse model. The availability of genome sequence information and infectious cDNA clone of the FMDV ZB/CHA/58(att) lays a new ground for further investigation of FMDV virulence determinants and development of new potent vaccine to FMD.     

新城疫病毒SDWF2003株F基因的克隆与分子特征分析

将新城疫病毒（Newcastle disease virus,NDV）SDWF2003株经10日龄SPF鸡胚增殖后,提取病毒基因组RNA,并以此为模板,RT-PCR扩增获得与F基因预期大小一致的DNA片段,亚克隆到pMD18-T载体并酶切鉴定正确后进行测序。软件分析显示：基因全长1662bp,编码553个氨基酸,裂解住点为^112R-R-Q-K-R-F^117,是典型强毒株氨基酸序列结构;此分离毒株属于基因Ⅶ型,该型F蛋白第101位、第121位特征性氨基酸残基分别是K（赖氨酸）和V（缬氨酸）,而本研究分离病毒F蛋白第101位、第121位分别是Q（谷氨酰胺）和V（缬氨酸）;同源性比较,与LaSota、F48E9、Ch99核苷酸同源性分别为84．4％、87．1％、98．9％,氨基酸同源性分别为88．3％、91．7％、98．4％。     

Emergence of a novel subgroup within the widely circulating lineage of foot-and-mouth disease virus serotype Asia 1 in India

The complete VP1 encoding (1D) gene of 54 foot-and-mouth disease (FMD) virus serotype Asia1 field isolates, most of which were isolated during 2000 and 2001, was sequenced. The phylogenetic analysis identified a novel subgroup (>10% nucleotide divergence) within the widely circulating lineage of this serotype. The newly emerged viruses were responsible for disease outbreaks in both cattle and buffaloes and were present in six different states in the country. Amino acid sequence comparison of these isolates revealed significant sequence divergence at many of the amino acid positions in comparison to those of lineage VI-A and C. Emergence of such viruses may affect the efficacy of vaccine strain currently used for protection against FMD in India.     

Use of heterogeneous operation-specific contact parameters changes predictions for foot-and-mouth disease outbreaks in complex simulation models

The role of contact parameters in a complex spatial simulation model of foot-and-mouth disease spread was determined by comparing predictions of number of infected premises, epidemic duration, and relative infection risk for different production sectors between a model that included the Full, heterogeneous (differing by production type) type-specific information about animal, vehicle and personnel movement between premises, and models that used partial and homogeneous (similar across production types) weighted-mean or proxy parameter sets for contacts between premises of all types. The model was run using a dataset of known premises locations in a three-county area in the Central Valley of California and categorized into 13 premises types and six production sectors.Results from models run with homogeneous contact parameters were always different from those obtained from the Full model, demonstrating that model predictions are affected by heterogeneity in contact parameters. Models simplified by using weighted-mean parameters predicted fewer infected premises. Models that were simplified by using medium dairy farm or large swine operation proxy parameters predicted longer epidemics with more infected premises, while those using small beef operation proxy parameters predicted shorter epidemics with fewer infected premises. Simplified-parameter models underestimated the impact on the economically important dairy sector, while overestimating the impact on beef and backyard operations. Results establish a need for heterogeneous, operation-specific contact parameters in complex stochastic simulation models that must be weighed against the cost of obtaining and coding premises type-specific contact information.     

O型、A型及Asia1型3个型口蹄疫病毒通用套式RT-PCR检测方法的建立

为了建立针对流行于我国及周边国家主要口蹄疫病毒(FMDV)血清型的检测方法,本实验设计2对特异性引物,通过对反应条件的优化,建立了能够同时扩增O型、A型及Asia1型FMDV VP1全基因的套式RT-PCR (RT-nPCR)方法.该方法能特异性检测O型、A型和Asia1型FMDV,对其它相关动物病毒的检测结果均为阴性;比FMDV多重RT-PCR商品试剂盒敏感约1 000倍.利用该方法对10份FMDV样品进行扩增检测,结合扩增产物的克隆测序技术,对所检样品进行了准确定型.实验结果表明,该方法通用型强,可用于3个血清型FMDV的检测和分子流行病学调查.     

Effectiveness of movement-prevention regulations to reduce the spread of foot-and-mouth disease in The Netherlands

After the foot-and-mouth disease (FMD) outbreak in 2001 the Dutch government implemented movement-prevention regulations to reduce the number of contacts between farms and consequently the risk of spread of highly contagious animal infections in the future. We studied the efficacy of these regulations by comparing registered cattle-movement data from 2000 to those from 2002. We also used the spatial and stochastic simulation model InterFMD to evaluate the consequences of the observed alterations in cattle-contact structure on the spread and control of a FMD epidemic.

There was a significant decrease in the number of cattle movements “for live use”, no difference in the number of group movements “for live use” and a distinct change in the overall contact structure. The most important structure changes were a decrease in the number of group movements from dairy farms to cattle-collection centres (−44%), and an increase in the number of group movements from dairy farms to beef farms (111%).

Our simulations demonstrated that the implemented regulations result in a concentration of the FMD-affected area and therefore in a reduction in size of the epidemics. Based on the intended Dutch strategy to control future FMD outbreaks, the decrease in extreme epidemics (95th percentiles) went from 31 infected farms in an epidemic-length of 65 days to 8 infected farms in an epidemic-length of 53 days in sparsely populated areas. In densely populated areas this decrease went from 135 infected farms to 103, while the duration reduced from 88 days to 81.     

Herd demographics correlated with the spatial distribution of a foot-and-mouth disease epidemic in Buenos Aires province, Argentina

During a recent foot-and-mouth disease epidemic in Argentina, cattle herds affected in 2001 were located mainly (69%) in Buenos Aires province. The densities of outbreaks (no. of outbreaks per km²) and cattle-demographic variables in the province were estimated using a geographical information system and kernel function. Before the epidemic officially was recognized, the density of outbreaks was correlated (r_sp = 0.28–0.47) with the geographic distribution of small (≤100 cattle), dairy and fattening herds. During the mass-vaccination campaign to control the epidemic (April–July), the density of outbreaks was most strongly correlated (r_sp = 0.20–0.25) with the distribution of large (>500 cattle) and breeding herds. After the end of the mass-vaccination campaign, large herds and number of cows were most strongly correlated (r_sp = 0.16–0.26) with outbreak density. These relationships might indicate that: (1) the disease spread more rapidly or was more easily detected in intensive production systems at the beginning of the epidemic; (2) vaccination and other control methods applied were less effective in large, semi-intensive production systems; (3) incomplete vaccine protection was responsible for herd outbreaks that occurred after the end of the mass-vaccination campaign.