Influence of management practices on soil organic matter,microbial biomass and cotton yield in Alabama's “Old Rotation”

The Old Rotation cotton experiment was designed to aid farm managers in implementing rotation schemes that not only increase yield, but also improve soil quality. Six different crop rotation treatments were imposed since 1896. Rotations were: IA, cotton (Gossypium hirsutum L.) grown every year without a winter legume and without N fertilization; IB, cotton grown every year with a winter legume and without N fertilization; IC, cotton grown every year without a winter legume and with 134 kg N as NH₄NO₃ ha^-1 year^-1; IIA, 2-year cotton-corn (Zea mays L.) rotation with a winter legume and without N fertilization; IIB, 2-year cotton-corn rotation with a winter legume and with 134 kg N ha^-1 year^-1 as NH₄NO₃; and III, 3-year cotton-corn- alternating soybean [Glycine max (L.) Merr.] or rye (Secale cereale L.) rotation with a winter legume and with 134 g N as NH₄NO₃ ha^-1 year^-1. Crimson clover (Trifolium incarnatum L.) was the winter legume cover crop. The 2-year cotton-corn rotation with a winter legume and with 134 kg N ha^-1 year^-1 (IIB) and the 3-year cotton-corn soybean/rye rotation with a winter legume and with 134 kg N ha^-1 year^-1 (III) had higher amounts of soil organic matter, soil microbial biomass C and crop yield than the other four treatments. The cotton grown every year without a winter legume or N fertilizer (IA) had a lower amount of soil organic matter, soil microbial biomass C and N and cotton seed yield than all other rotations. In 1988 and 1992 cotton seed and legume yield were correlated in positive, curvilinear relationships with soil organic matter (r ² ranged from 0.72 to 0.87). In most months, soil microbial biomass C and N was lower in the cotton grown every year without winter legumes or fertilizer (IA) than the other five rotations. In 1994, microbial biomass C and the C_mic:C_org ratio correlated in positive, curvilinear relationships with seed cotton yield (r ²=0.87 and 0.98, respectively). After 99 years of management the Old Rotation cotton experiment indicates that winter legumes increase amounts of both C and N in soil, which ultimately contribute to higher cotton yields. Microbial biomass C and the C_mic:C_org ratio are poor predictors of annual crop yield but may be an accurate indicator of soil health and a good predictor of long-term crop yield.     

Different chemical composition and storage mechanism of soil organic matter between active and permafrost layers on the Qinghai–Tibetan Plateau

Journal of Soils and Sediments - Although many studies have paid attention to the storage and dynamics of organic carbon (OC) in the Arctic permafrost, there are limited reports for low-latitude...     

Relationships between C respiration and fine particulate organic matter (250–50 μm) weight

Soil organic matter (SOM) status was evaluated using the relationships between two independent soil variables, i.e., C respiration and the weight of particulate organic matter POM (4000–50 μm) under different vegetation covers and ecosystems of central Belgium. A positive relationship was found between the weight of the finest POM fraction, i.e., fine POM fraction (250–50 μm) and C respiration after 1 week (R² = 0.34, n = 120, p < 0.0001) and 2 weeks (R² = 0.28, n = 120, p < 0.0001) of incubation. Therefore, we assumed that the C respiration and the weight of fine POM might be used to evaluate the SOM status under different vegetation covers and ecosystems.     

Response of organic N monomers in a sub-alpine soil to a dry–wet cycle

Cycles of soil drying followed by rewetting occur in most terrestrial ecosystems, but there is conflicting evidence as to the role of osmolytes in dry–wet cycles. The broad aim of this experiment was to determine how N-containing osmolytes and other organic N monomers are affected by rewetting of a moderately dry soil. In a sub-alpine grassland, experimental plots were irrigated with 50 mm of water near the conclusion of a typical late-summer drying cycle. Twelve putative osmolytes (proline, 8 quaternary ammonium compounds, trimethylamine N-oxide, ectoine, hydroxyectoine) and 60 other organic N monomers were identified and quantified by capillary electrophoresis-mass spectrometry of the free/exchangeable pool of soil water (0.5 M K₂SO₄ extracts) and microbial biomass (via chloroform fumigation extraction). The total concentration of organic N monomers was 25-times greater in fumigated than unfumigated extracts. Differences in relative abundance of compound classes and compounds between fumigated and unfumigated extracts suggested some compounds were localized to the free/exchangeable pool; others were predominantly microbial, whereas many were shared between pools. A striking feature of the free/exchangeable pool was that on an N-basis alkylamines were the most abundant compound class and accounted for 34% of the pool of organic N monomers. There was no evidence that osmolytes were the primary means soil microbes coped with dry–wet cycles. Instead, the pool of osmolytes was an invariant 4% of the pool of CE-MS detected monomers in K₂SO₄ extracts and 7% of the pool of CE-MS detected monomers in the chloroform-labile (microbial) fraction. The absence of substantial amounts of osmolytes may be because water stress was too mild or brief, or because osmolyte synthesis was limited by availability of energy, N or C and some alternative strategy was used to cope with water deficits.     

Do organic inputs alter resistance and resilience of soil microbial community to drying?

Grassland ecosystems in south-eastern Australia are important for dairy and livestock farming. Their productivity relies heavily on water availability, as well as the ecosystem services provided by soil microbial communities including carbon and nutrient cycling. Management practices such as compost application are being encouraged as a means to improve both soil water holding capacity and fertility, thereby buffering against the impacts of increasing climate variability. Such buffering consists of two complementary processes: resistance, which measures the ability of an ecosystem to maintain community structure and function during a period of stress (such as drying); and resilience, which measures the ability of an ecosystem to recover community structure and function post-stress. We investigated the effects of compost on the resistance and resilience of the grassland soil ecosystem under drying and drying with rewetting events, in a terrestrial model ecosystem. Overall, compost addition led to an increase in soil moisture, greater plant available P and higher plant δ¹⁵N. Soil C:nutrient ratios, mineral N content (NH₄⁺ and NO₃⁻) and soil microbial PLFA composition were similar between amended and unamended soils. Rainfall treatment led to differences in soil moisture, plant above-ground and below-ground biomass, plant δ¹⁵N, soil mineral N content (NH₄⁺ and NO₃⁻) and microbial biomass C, N and P composition but had no effects on soil C:nutrient ratios, plant available P and soil microbial PLFA composition. There was little interaction between rainfall and compost. Generally, the soil microbial community was resistant and resilient to fluctuations in rainfall regardless of compost amendment. However, these properties of the soil microbial community were translated to resilience and not resistance in soil functions. Overall, the results below-ground showed much greater response to rainfall than compost amendment. Water was the key factor shaping the soil microbial community, and nutrients were not strong co-limiting factors. Future projections of increasing rainfall variability will have important below-ground functional consequences in the grassland, including altered nutrient cycling.     

What are the primary factors controlling the light fraction and particulate soil organic matter content of agricultural soils?

Particulate organic matter (POM) and light fraction organic matter (LFOM) are the fractions of soil organic matter (SOM) considered most active in terms of nutrient cycling and maintenance of soil structure. They respond quickly to changes in management and may offer insights into the long-term effect of management on SOM. However, the literature provides contradictory evidence regarding the factors which influence the amount of POM and LFOM, and there is little evidence to differentiate the relative importance of factors. Utilising data from over 150 experiments reported in the literature, we employed multiple regression to produce separate models quantifying the effect of management factors and environmental variables on POM, LFOM and total SOM; 29.3 % of the variance in the response variables was explained for POM, 28.3 % for LFOM, and 29.3 % for total SOM. Climate, organic amendments and inclusion of fallow periods were significant terms for all fractions. Climate had a larger influence on total SOM than POM or LFOM, whilst POM and LFOM were more strongly influenced by factors related to the recent history of organic matter addition; organic amendments and inclusion of fallows. Factors that were not significant variables for any of the fractions included tillage and application of N fertiliser, whilst soil texture was only a significant factor for SOM. General agreement between the total SOM, POM and LFOM models on the most important factors supports the idea that both POM and LFOM are good predictors of long-term changes to total SOM.     

Effect of levels of take‐all and phosphorus fertiliser on the dry matter and grain yield of wheat

In a field experiment with wheat (Triticum aestivum L.), the effect of the percentage severity of take‐all on the production of dried tops and grain and the kernel weight (mg/seed) was measured when different amounts of phosphorus (P) fertiliser were applied. The soil was severely P deficient. The amounts of P fertitiser varied from nil P (deficient) to 40 kg P/ha (adequate) applied annually. The levels of Gaeumannomyces graminis tritici (Ggt) were generated by four cropping sequences. The levels of percent severity of Ggt on plant roots ranged from low (<10% of wheat plant roots infected) to high (70% of roots infected by Ggt). Yield of dried tops, grain, and kernal weight, all increased as the level of P applied increased, but the amount of Ggt infection decreased. No grain was produced where no P was applied. The percentage increase in yield due to declines in the severity of take‐all was greater as the level of P applied increased. Increasing levels of P fertiliser help control the severity of Ggt (%) only where the initial level of Ggt with nil P fertiliser are moderate to low. Where the levels of Ggt severity are >65% the effectiveness of P in reducing the levels of Ggt severity rapidly declined. The percentage severity of Ggt affected the efficiency of plants to use P fertilisers. For each cropping sequence, a Mitscherlich function described the grain yield response to P fertiliser. The maximum grain yield (A coefficient) and the curvature coefficient (C) both declined with increases in the level of Ggt severity (%). For example, the C was significantly reduced from 0.134±0.03 for the least Ggt severity (%) to 0.00446±0.001 where Ggt was not controlled. The kernal weight (mg/seed) was increased by P application and decreased by Ggt infection.     

Influence of staggered sown Spring sunflower (Helianthus Annuus L.) at varying intra–row spacing and applied–N on pre– and post–anthesis N dynamics and dry matter partitioning in Indo–Gangetic Plains Region

In current study, dry–matter accumulation (DMA), pre– and post–anthesis nitrogen (N) accumulation, N translocation (NT) and dry–matter partitioning by sunflower seeds was investigated under three sowing dates (January 20, February 10 & March 2), two intra–row spacings (30 & 24 cm) and four nitrogen doses (0, 45, 60 & 75 kg ha^–1) in two alluvial soils. Early sowing resulted in higher DMA and NT; leading to higher nitrogen use efficiency (NUE) that could be associated with higher pre–anthesis N accumulation. The closer intra–row spacing resulted in higher DMA by all plant parts except seed. Each graded N dose improved DMA, but improvement in dry–matter partitioning to seed was significant up to 60 and 75 kg N ha^–1 during 2014 and 2015, respectively owing to higher NT under respective treatments. NUE was highest at 60 kg N ha^–1 during both years.     

Does history matter? Temperature effects on soil microbial biomass and community structure based on the phospholipid fatty acid (PLFA) analysis

Background, aim, and scope

Temperature is an important environmental factor regulating soil microbial biomass, activity, and community. Soils from different climatic regions may have very different dominant soil microbes, which are acclimated to the local conditions like temperature. Changing soil temperature especially warming has been shown to increase the mortality rate of soil microbes. However, little is known about the responses of soil microbes coming from different climatic regions to different incubation temperatures. The objective of this study was to examine the temperature effects on microbial biomass and community of soils collected from cold, intermediate, and hot natural sites.

Materials and methods

Soils were collected from northern (Heilongjiang province), central (Jiangsu province), and southern (Guangxi province) China, these soils having very different temperature histories. The Heilongjiang soil was from the coldest region with a mean annual temperature of 1.2°C, the Jiangsu soil was intermediate with a mean annual temperature of 15.7°C, and Guangxi soil was from the hottest area, with a mean annual temperature of 21.2°C. These three soils were incubated at 4°C, 15°C, 25°C, and 35°C for up to 56 days. Phospholipid fatty acid (PLFA) analyses were conducted on days 0, 3, 7, 14, 28, and 56 to track the dynamics of soil microbes.

Results

Soil microbial biomass indexed by total phospholipid fatty acid concentration decreased with increasing incubation temperature, with that of the Heilongjiang soil decreasing most. At the end of incubation, the biomass at 35°C in the Heilongjiang, Jiangsu, and Guangxi soils had declined to 65%, 72%, and 96% of the initial biomass, respectively. The PLFA patterns shifted with increasing temperatures in all the soils, especially at 35°C; the change was biggest in the Heilongjiang soil.

Discussion

History does have effects on soil microbes responding to environmental stress. Soil microbial biomass and PLFA profiles shifted least in the Guangxi soil with the hottest temperature history and most in the Heilongjiang soil with the coldest temperature, indicating that the distribution of free-living microorganisms is influenced by climatic factors. The majority of soil microorganisms coming from the hot regions are more adapted to high temperature (35°C) compared to those from the cold area. There are some regular changes of PLFA profiles when increasing incubation temperature to 35°C. However, the effect of incubation temperature on soil microbial community structure was inconclusive. As PLFA profile community structure is the phenotypic community structure. Genotype experiments are required to be done in future studies for the better understanding of soil microbes in different climate regions with concerning temperature variation.

Conclusions

With the increasing incubation temperature, soil microbial biomass and PLFA profiles shifted most in the soil with the coldest temperature history and least in the soil with the hottest temperature. History does matter in determining soil microbial dynamics when facing thermal stress.     

Is there a linear relationship between priming effect intensity and the amount of organic matter input?

Inputs of fresh organic matter (FOM) are known to affect the rate of soil organic matter (SOM) mineralization. SOM mineralization can be accelerated or decelerated by FOM inputs. This phenomenon, known as the Priming effect (PE), may largely influence the carbon (C) storage capacity of soils. However, the link between PE intensity and FOM inputs is not clearly understood. Indeed, almost all the studies about PE used only one FOM amount which is generally largely below the amount of FOM observed in field conditions. In our study, we incubated soil amended with three levels of ¹³C-labeled straw as FOM and a control without FOM amendment for 80 days. The three levels used were in the same range as the natural FOM inputs observed on our sampling site. Various levels of mineral nitrogen were added within each level of straw supply so that the final input C:N ratios ranged among 44, 30 and 20. CO₂ and δ¹³C-CO₂ were measured during the experiment allowing us to distinguish the FOM respired CO₂ from the SOM respired CO₂. We observed that PE intensity did not increase linearly with increasing FOM additions. Moreover, decreasing the input C:N ratios did not systematically affect PE intensity probably because of shifts in the microbial characteristics such as their C:N ratio or their assimilation yields. These results suggest that PE is a saturating function of FOM inputs that is only weakly influenced by initial N availability. Our results may be explained (i) by the existence of a limited SOM pool subject to PE (ii) or by the occurrence of two simultaneous and antagonistic mechanisms: an increase of the total active microbial biomass accelerating SOM mineralization (i.e. a positive PE) and a preferential substrate utilization of FOM over SOM decreasing SOM mineralization (i.e. a negative PE). Finally, irrespective of the mechanisms implied, our results suggest that the importance of positive PE relatively to the amount of FOM may decrease when FOM inputs increase, which is favorable to carbon sequestration in soils. Indeed, in the case of the lower amount of FOM, the PE corresponded to 6.25% of the total amount of CO₂ mineralized at the end of the experiment while, for the higher amount of FOM, the PE corresponded to 5% of the total amount of CO₂ mineralized at the end of the experiment.     

Effects of flue gas desulfurization gypsum by-products on microbial biomass and community structure in alkaline–saline soils

Purpose

For an alkaline?Csaline region in Northwest China, we examined the responses of soil microbial communities to flue gas desulfurization gypsum by-products (FGDB), a new ameliorant for alkaline?Csaline soils. In 2009 and 2010, we collected soils from 0?C20?cm and 20?C40?cm depths along an experimental FGDB gradient (0, 0.74, 1.49, 2.25, and 3.00?kg FGDB m^?2).

Materials and methods

As a measure of microbial community composition and biomass, we analyzed phospholipid fatty acids (PLFAs). We used real-time quantitative polymerase chain reaction (qPCR) to measure abundance of bacterial 16?S rRNA copy numbers. Additionally, physicochemical soil parameters were measured by common laboratory methods.

Results and discussion

Microbial community composition differed along the FGDB gradient; however, the microbial parameters did not follow a linear response. We found that, in 2009, total PLFA concentrations, and concentrations of total bacterial and Gram-negative bacterial PLFAs were slightly higher at intermediate FGDB concentrations. In 2010, total PLFA concentrations, and concentrations of total bacterial, Gram-positive bacterial, Gram-negative bacterial, and fungal PLFAs as well as the fungal:bacterial PLFA ratio were highest at 1.49?kg FGDB m^?2 and 3.00?kg FGDB m^?2. PLFA concentrations often differed between 2009 and 2010; however, the patterns varied across the gradient and across microbial groups. For both years, PLFA concentrations were generally higher at 0?C20?cm depth than at 20?C40?cm depth. Similar results were obtained for the 16?S rRNA copy numbers of bacteria at 0?C20?cm depth. FGDB addition resulted in an increase in soil Ca²⁺ and NO ₃ ^? ?CN and a decrease in pH and electrical conductivity (EC). Shifts in PLFA-based microbial community composition and biomass could partly be explained by pH, soil organic carbon, total nitrogen (TN), soil moisture, EC, inorganic nitrogen, C/N, and Ca²⁺. Indirect effects via shifts in abiotic soil properties, therefore, seem to be an important pathway through which FGDB affect soil microbial communities.

Conclusions

Our results demonstrate that addition of FGDB leads to significant changes in soil physicochemical and microbial parameters. As such, addition of FGDB can have large impacts on the functioning of soil ecosystems, such as carbon and nitrogen cycling processes.     

Soil organic phosphorus and microbial community composition as affected by 26 years of different management strategies

Agricultural management can affect soil organic matter chemistry and microbial community structure, but the relationship between the two is not well understood. We investigated the effect of crop rotation, tillage and stubble management on forms of soil phosphorus (P) as determined by solution ³¹P nuclear magnetic resonance spectroscopy and microbial community composition using fatty acid methyl ester analysis in a long-term field experiment (26 years) on a Chromic Luvisol in New South Wales, Australia. An increase in soil organic carbon, nitrogen and phosphorus compared to the beginning of the experiment was found in a rotation of wheat and subterranean clover with direct drill and mulching, while stubble burning in wheat–lupin and wheat–wheat rotations led to soil organic matter losses. Microbial biomass was highest in the treatment with maximum organic matter contents. The same soil P forms were detected in all samples, but in different amounts. Changes in organic P occurred mainly in the monoester region, with an increase or decrease in peaks that were present also in the sample taken before the beginning of the experiment in 1979. The microbial community composition differed between the five treatments and was affected primarily by crop rotations and to a lesser degree by tillage. A linkage between soil P forms and signature fatty acids was tentatively established, but needs to be verified in further studies.     

Relationship between archaeal community structure and vegetation type in a fen on the Qinghai–Tibetan Plateau

The contribution of different methanogenic precursors probably depends on vegetation in the cold Zoige peatlands. This study was carried out to elucidate the relationship between archaeal community dynamics and vegetation type over growing season. Soil samples were collected monthly during the growing season from two vegetation types (communities dominated by Carex muliensis vs. Eleocharis valleculosa) on an open fen at the Wetland National Nature Reserve of the Zoige peatlands on the Qinghai–Tibetan Plateau. Archaeal community structure was determined with terminal restriction fragment length polymorphism analysis of the 16S rRNA gene fragment. Methanosarcinales, Methanosaeta, Methanomicrobiales, Methanobacteriales, uncultured RC-II, and uncultured Crenarchaeota were detected in both vegetation types. The results suggested that seasonal change affects the activity rather than the structure of the archaeal community over the growing season. Ordination analyses indicated that archaeal community composition was related to vegetation type and plant height.     

Mineralization of native soil organic matter is not regulated by the size,activity or composition of the soil microbial biomass—a new perspective

Soil organic matter is extensively humified; some fractions existing for more than 1000 years. The soil microbial biomass is surrounded by about 50 times its mass of soil organic matter, but can only metabolize it very slowly. Paradoxically, even if more than 90% of the soil microbial biomass is killed, the mineralization of soil organic matter proceeds at the same rate as in an unperturbed soil. Here we show that soil organic matter mineralization is independent of microbial biomass size, community structure or specific activity. We suggest that the rate limiting step is governed by abiological processes (which we term the Regulatory Gate hypothesis), which convert non-bioavailable soil organic matter into bioavailable soil organic matter, and cannot be affected by the microbial population. This work challenges one of the long held theories in soil microbiology proposed by Winogradsky, of the existence of autochthonous and zymogenous microbial populations. This has significant implications for our understanding of carbon mineralization in soils and the role of soil micro-organisms in the global carbon cycle. Here we describe experiments designed to determine if the Regulatory Gate operates. We conclude that there is sufficient experimental evidence for it to be offered as a working hypothesis.     

Effects of normal and Fe‐treated organic matter on Fe chlorosis and yields of grain sorghum

Abstract

A greenhouse study was conducted to evaluate the effects of normal and Fe‐treated plant material on Fe chlorosis and yields of grain sorghum. Pigweed, guar, clover, sunflower and wheat plants grown in the field for six weeks were sprayed with a 20% ferrous sulfate solution. The plants were harvested after 48 hours, air dried, then ground to pass through a 0.5 mm stainless steel seive. Different rates of normal and Fe‐treated plant material (0, 14.8, 22.2 and 29.6 Mg ha^‐1) were added to the Pernitas fsl (Typic Agiustoll).

Chlorosis increased with increasing rates of normal plant material added to the soil. Conversely, applications of Fetreated plant material reduced Fe deficiency chlorosis in grain sorghum. The order of effectiveness of Fe‐treated plant material was: sunflower > pigweed > guar > clover > wheat. There was no significant growth response to the untreated plant material. Growth responses to the Fe‐treated plant material were: sunflower > pigweed > guar > wheat > clover. Data obtained indicate that sunflower and pigweed are good Fe‐carriers and could be used to recycle Fe in the soil to correct Fe deficiency chlorosis and increase yields     

Biochar and organic fertilizer changed the ammonia-oxidizing bacteria and archaea community structure of saline–alkali soil in the North China Plain

Journal of Soils and Sediments - The application of a large amount of inorganic nitrogen (N) fertilizer resulted in an increasing N loss. It is an effective practice that biochar and organic...     

Steam treatment of surface soil: how does it affect water-soluble organic matter, C mineralization, and bacterial community composition?

Steam soil disinfestation is efficiently used in the field for pre-planting pest control. Providing steam to the soil must have consequences, either beneficial or detrimental for the soil functioning. We set up a laboratory experiment to quantify the soil quality dynamics induced by this agricultural practice. In steamed and control soil, we monitored the size, the activity, and the genetic structure of the bacterial community in the top 2 cm soil every second day over a 10-day period after the treatment. We also characterized the bioavailable organic matter using fluorescence and ATR-FTIR spectroscopy. We showed that steaming induced the release of twice as much dissolved organic carbon in steamed soil as in the control soil. This extra carbon was much less fluorescent and contained a higher proportion of aliphatic compounds (alkyl chains, primary alcohols). After an initial drop in the bacterial community, we observed a tenfold increase in the number of bacteria, a flush in carbon mineralization, and genetic structure modification, which could be related to the newly released carbon. Steam treatment showed strong but quickly reversible impacts on the soil functioning, enabling farmers to sow approximately 1 week after treatment.     

Edge effects and trampling in boreal urban forest fragments – impacts on the soil microbial community

Fragmentation of forest ecosystems increases the proportion of edge habitat and is accompanied by a change in plant species composition. The recreational use of urban forests leads to decreased vegetation cover and the formation of paths, and thus, to fragmentation at small scales. We studied the impacts of forest and path edge effects on the soil microbial community structure (by using the phospholipid fatty acid (PLFA) method) and microbial activity (measured as basal respiration) in 34 mesic boreal urban forest fragments in Finland. We sampled the humus layer 1) from the forest edge into the interior (0–80 m), and 2) at different distances from paths. Microbial community structure was only slightly affected by the forest edge but differences were found between distances of 0–10 m and over 50 m from the edge. These changes correlated with changes in soil pH. Although changes in the microbial community structure were not pronounced, microbial biomass and activity were 30–45% lower at the first 20 m into the forest fragments, due to a low moisture content of the humus near the edge. The decreased microbial activity detected at forest edges implies decreased litter decomposition rates, and thus, a change in ecosystem nutrient cycling. The microbial community structure differed between paths and surrounding areas and correlated with changes in soil pH. Paths also supported approximately 25–30% higher microbial biomass with a transition zone of at least 1 m from the path edge. Path associated disturbances (mainly alterations in vegetation and soil pH) were reflected in the soil microbial community structure up to 1.5 m from the paths.