Genetic and Phenotypic Diversity in Downy-mildew-resistant Sorghum (Sorghum bicolor (L.) Moench) Germplasm

Genetic and phenotypic diversity among randomly selected 36 downy-mildew-resistant sorghum accessions were assessed, the former using 10 simple sequence repeat (SSR) marker loci and the latter using 20 phenotypic traits. The number of alleles (a _j ) at individual loci varied from five to 14 with an average of 8.8 alleles per locus. Nei's gene diversity (H _j ) varied from 0.59 to 0.92 with an average of 0.81 per locus. High gene diversity and allelic richness were observed in races durra caudatum (H _j = 0.76, a _j = 4.3) and guinea caudatum (H _j = 0.76, a _j = 3.8) and in east Africa (H _j = 0.78, a _j = 7.2). The regions were genetically more differentiated than the races as indicated by Wright's F _st. The pattern of SSR-based clustering of accessions was more in accordance with their geographic proximity than with their racial likeness. This clustering pattern matched little with that obtained from phenotypic traits. The inter-accession genetic distance varied from 0.30 to 1.00 with an average of 0.78. Inter-accession phenotypic distance varied from 0.01 to 0.55 with an average of 0.33. Eleven accession-pairs had phenotypic distance of more than 0.50 and genetic distance of more than 0.70. These could be used as potential parents in a sorghum downy mildew resistance-breeding program.     

Accumulation of radioactive cesium in sorghum (Sorghum bicolor (L.) Moench) accessions cultivated in Fukushima in 2011 and 2012

ABSTRACT

The accident at Fukushima 1 Nuclear Power Plant in 2011 caused contamination by radioactive cesium (¹³⁴Cs and ¹³⁷Cs) in surrounding areas. After this accident, concerns about Cs contamination, including food safety, have limited industrial activities and reconstruction in Fukushima. Sorghum (Sorghum bicolor (L.) Moench) is an annual C₄ crop that can be used as biofuel feedstock due to its high biomass. Use of Cs-contaminated fields to produce biofuel feedstock would be more acceptable than use for food or feed crops due to the lower risk of human internal exposure to radioactive Cs. In addition, high-biomass sorghum might be suitable for removal of Cs from fields (phytoremediation). For both applications, it is important to use accessions showing the appropriate level of accumulation of radioactive Cs (low for biofuel feedstock, high for phytoremediation). Here, we examined the accumulation of radioactive Cs in the aerial parts of 56 sorghum accessions grown in Fukushima. Accessions were cultivated in a low-level-contaminated field in 2011 and in a highly contaminated field in a planned evacuation zone in 2012. After cultivation, activity concentrations from ¹³⁴Cs and ¹³⁷Cs were measured in the aerial plant parts. In 2011, the activity concentrations of ¹³⁴Cs and ¹³⁷Cs were 58.2–350 and 58.6–450 Bq kg^?1 dry weight, respectively. In 2012, the concentrations of ¹³⁴Cs and ¹³⁷Cs were 54.2–1320 and 57.1–1960 Bq kg^?1 dry weight, respectively. Relative to the median values of the accessions grown each year, 3 showed lower activity concentrations and 2 showed higher activity concentrations of radioactive Cs under both cultivation conditions. In contrast to a previous report, there was no significant correlation between biomass and Cs activity concentration. Because both biomass and Cs concentration are important in classifying accessions for use in phytoremediation, we also calculated the Cs accumulation index (single-plant biomass × Cs activity concentration) for each accession. The accession AKLMOI WHITE showed the highest values in both years, suggesting that this accession has the high per-plant accumulation capacity for radioactive Cs. Our data collected from actual contaminated fields is irreplaceable for choosing sorghum accessions for cultivation in Cs-polluted sites such as Fukushima.     

Changes in the diversity and geographic distribution of cultivated millet (Pennisetum glaucum (L.) R. Br.) and sorghum (Sorghum bicolor (L.) Moench) varieties in Niger between 1976 and 2003

Changes in the diversity of landraces in centres of diversity of cultivated plants need to be assessed in order to monitor and conserve agrobioversity—a key-element of sustainable agriculture. This notably applies in tropical areas where factors such as increased populations, climate change and shifts in cropping systems are hypothesized to cause varietal erosion. To assess varietal erosion of staple crops in a country subjected to various anthropogenic and natural environmental changes, we carried out a study based on a comparison of the diversity of pearl millet and sorghum varieties collected in 79 villages spanning the entire cereal-growing zone of Niger over a 26 year period (1976–2003). For these two crops, the number, name and type of varieties according to important traits for farmers were considered at different spatial scales (country, region, village) at the two collection dates. The results confirmed the high diversity of millet and sorghum varieties in Niger. No erosion of varietal diversity was noted on a national scale during the period covered. Some changes were observed but were limited to the geographical distribution of certain varieties. This highlights that farmers’ management can preserve the diversity of millet and sorghum varieties in Niger despite recurrent and severe drought periods and major social changes. It also indicates that rainfed cereal cropping systems in Niger should remain to be based on millet and sorghum, while reinforcing farmers’ seed systems.     

Genetic erosion of sorghum (Sorghum bicolor (L.) Moench) in the centre of diversity, Ethiopia

The Ethiopian region is characterised by a wide range of agro-climatic conditions, which accounted for the enormous resources of agro-biodiversity that exist in the country. The most important of these resources is the immense genetic diversity of the various crop plants in the country. Of these, one of the most on farm genetically diverse crops is sorghum. Since the advent of formal breeding in particular after green revolution, genetic diversity of most crops has been threatened worldwide. In order to assess on farm genetic erosion (GE), various research methodologies were employed. These were focused group interviews with 360 farmers, on farm monitoring and participation with 120 farmers, key informant interviews with 60 farmers and development agents, and semi-structured interviews with 250 farmers. Besides, diversity fairs were done with over 1200 farmers. Notwithstanding the complexity of assessing GE, it was assessed by various methods; namely, by temporal method (comparing 1960 and 2000 collections), area method, and semi-structured interview method at individual, community or wereda level and causes of varietal loss from other various perspectives. Farmers perceived GE as the reduced importance of the variety as indicated by lower proportion in the varietal portfolio. The five most important factors for varietal loss at individual farmers’ level were reduced benefit from the varieties, drought, Khat expansion, reduced land size and introduction of other food crops respectively. GE was not affected by wealth groups and ecological regions. Farmers do not make simple replacement as a strategic mechanism for genetic resources management. GE at regional level was quantified by temporal and spatial method. There was a complementation not rivalry between farmer varieties (FVs) and improved varieties (IVs). The whole process of GE is explained by three models, namely: Bioecogeographic enhanced genetic erosion model, Farmer induced genetic erosion model and Farmer-cum-bioecogeographic genetic erosion model. As aforementioned, sorghum genetic erosion behaviour is completely different from other food crops such as tetraploid wheat. The prediction in the late seventies that complete erosion of FVs by IVs by the end of the eighties, the principle of GE that competition between IVs and FVs, favours the former and results in the replacement of the latter is not valid in the context of sorghum in Ethiopia. Hence, maintenance of the on farm genetic diversity of sorghum is a reality but GE is rhetoric.     

Sweet Sorghum [Sorghum bicolor (L.) Moench] Biomass Production for Biofuel and the Effects of Soil Types and Nitrogen Fertilization

This research aimed to determine the optimum nitrogen fertilization rate on three soils for producing biomass sweet sorghum (Sorghum bicolor cultivar M81E) and corn (Zea mays cultivar P33N58) grain yield and to compare their responses. The research was conducted in Missouri in rotations with soybean, cotton, and corn. Seven rates of nitrogen (N) were applied. Sweet sorghum dry biomass varied between 11 and 27.5 Mg ha^?1) depending on year, soil type, and N rate. Nitrogen fertilization on the silt and sandy loam soils had no effect (P > 0.05) on sweet sorghum yield grown after cotton and soybean. However, yield increased in the clay soil. Corn grain yielded from 1.3 to 12.9 Mg ha^?1, and 179 to 224 kg N ha^?1 was required for maximum yield. Increasing biomass yield required N application on clay but not on silt loam and sandy loam in rotations with soybean or cotton.     

Amelioration of Drought in Sorghum (Sorghum bicolor L.) by Silicon

The purpose of this study was to analyze the effects of silicon (Si) nutrition on sorghum growth under drought. The present study investigated the distribution of Si in plant parts under stress conditions and its effects on physiological and growth traits. The study was conducted during 2 years (2007–2009) at PMAS Arid Agriculture University, Rawalpindi, Pakistan. Polyethylene glycol (PEG) 6000 (–4.0, –6.0, –8.0, and –10.0 Mpa) solution was used to screen drought-tolerant (Johar1) and drought-susceptible (SPV462) sorghum (Sorghum bicolor L.) cultivars, which were replicated three times with Si sources of potassium silicate (K₂SiO₃) (Si₃₀₀: 300 ml L^?1) and control (Si₀) treatments. The results showed that drought-tolerant cultivars accumulated maximum Si under Si treatment versus Si absence, which resulted increased leaf water potential, leaf area index, Soil Plant Analysis Development (SPAD) chlorophyll, net assimilation, and relative growth rate over SPV462. Similarly, Si accumulation in leaves conserved transpiration and leaf water potential, verifying Si nutrition as a defense for plants under drought.     

Multivariate analysis of morphological variation in sorghum (Sorghum bicolor (L.) Moench) germplasm from Ethiopia and Eritrea

Multivariate methods, including principal component, cluster and discriminant analyses, were used to assess the patterns of morphological variation and to group 415 sorghum accessions for 15 quantitative characters. The first five principal components explained 79% of the total variation with plant height and days to 50% flowering being the most important characters in the first principal component. Cluster analysis grouped the accessions into ten clusters. A greater proportion of accessions of similar adaptation zones and accessions from regions of origin with similar agro-climatic conditions were grouped together. Moreover, discrimination of accessions was more pronounced when discriminant analysis was based on zone of adaptation rather than regions of origin. Based on the observed patterns of variation, it is concluded that the morphological variation in the material studied is structured by environmental factors. The implications of the results for plant breeding and germplasm conservation programmes arediscussed.     

Genetic diversity in Sorghum bicolor(L.) Moench accessions from different ecogeographical regions in Malawi assessed with RAPDs

Genetic variation within and among several Sorghum populations from different agroecological zones in Malawi were investigated using random amplified polymorphic markers (RAPDs). DNA samples from individual plants were analyzed using 35 oligonucleotides of random sequence. Twenty five of these primers allowed amplifications of random polymorphic (RAPD) loci. Overall, 52% of the scored loci were polymorphic. Every accession was genetically distinct. The analysis of molecular variance revealed that the within-region (among accessions) variations accounted for 96.43% of the total molecular variance. Observed variations in allelic frequency was not related to agroecological differences. The degree of band sharing was used to evaluate genetic distance between accessions and to construct a phylogenetic tree. Further analysis revealed that the sorghum accessions analyzed were genetically close despite considerable phenotypic diversity within and among them. It is suggested that all the sorghum landraces currently available in Malawi should be conserved both ex situ and in situ to maintain the current level of genetic diversity.     

Aluminum effects on uptake and translocation of nitrogen in sorghum (Sorghum bicolor,L. Moench)

The effects of aluminum on the uptake and translocation of N in two hybrid cultivars of sorghum with differential tolerance to aluminum were studied.

Aluminum decreased the amount of N accumulated and the % of N in the aerial parts of the plants. In the roots the amount of N accumulated also decreased but the % of N increased, in both cultivars. Besides an effect on dry matter yield, Al probably reduces the uptake of N and its translocation to the aerial parts of the plant. Apparently, this impairment on N translocation resulted from Al effects on the root pressure.

Aluminum not only reduced the amount of N translocated but also changed the sap composition. The % of NO₃ ‐N decreased while the % of amino acid‐N increased suggesting an Al effect on N uptake and also on protein degradation. Asparagine and glutamine contributed about 80% of the free amino acid fraction; however, their proportions changed in presence of Al. Therefore, Al also interfered with the synthesis and/or interconversion of these amino acids.     

Sorghum (Sorghum bicolor L. Moench) Flour Pasting Properties Influenced by Free Fatty Acids and Protein

A second unusually high viscosity peak appeared at the cooling stage (50°C) of a Rapid Visco‐Analyser (RVA) profile of short‐term stored (two months at room temperature) whole grain sorghum flour, while freshly ground flour had a typical pasting curve with one viscosity peak at the 95°C holding period. The formation of the second viscosity peak was caused by liberation of free fatty acids (FFA), mainly palmitic (15.6%), oleic (41.9%), and linoleic (37.9%) acids from stored flour. After the flour samples were pretreated with pepsin or the protease thermolysin, the second peak disappeared in the presence of FFA while the high viscosity was partially retained, indicating that flour protein was another essential component to the production of the actual peak. Effects of dithiothreitol (DTT), pH, and NaCl on RVA profiles of stored flour suggested that disulfide‐linked protein and electrostatic interaction are required for the peak production. In the presence of sufficient FFA, similar cooling stage viscosity peaks appeared in the RVA profiles of flour samples from maize, rice, millet, and wheat; thus, the effect was not unique to sorghum flour. Coinciding with previously reported findings from our laboratory of a three‐component interaction and discernable complex in a model system, a similar three‐component (starch, protein, and FFA) interaction was revealed in natural flour systems resulting in formation of an unusual and notably high cooling stage viscosity peak. Practical applications and an interaction mechanism are discussed.     

Molecular and phenotypic characterization of a collection of white grain sorghum [Sorghum bicolor (L.) Moench] for temperate climates

Genetic Resources and Crop Evolution - Sorghum [Sorghum bicolor (L.) Moench] is a subsistence crop and the main food for populations in arid or semiarid regions and it is appreciated for the...     

Genome wide association analysis of acid detergent fiber content of 206 forage sorghum (Sorghum bicolor (L.) Moench) accessions

Genetic Resources and Crop Evolution - Forage sorghum (Sorghum bicolor (L.) Moench) is a C4 cereal crop with excellent quality, which is widely cultivated in many countries and regions. Acid...     

Population structure,gene flow and genetic diversity analyses based on agro-morphological traits and microsatellite markers within cultivated and wild germplasms of okra [Abelmoschus esculentus (L.) Moench.]

Genetic Resources and Crop Evolution - Okra [Abelmoschus esculentus (L.) Monech.] is an annual herb of the family Malvaceae and has tremendous nutritional and industrial potential. However, the...     

Polyphenols in wild and weedy Mexican common beans (Phaseolus vulgaris L.)

The polyphenolic composition of 62 wild and weedy Mexican bean collections from diverse origins, grouped by their seed coat color, was assessed. According to spectrophotometric analysis, the range of total phenols, condensed tannins, and total anthocyanins presented wide differences. Furthermore, the phenolic acid, flavonoid, and anthocyanin profiles were analyzed using HPLC. Ferulic was the main phenolic acid. Kaempferol and quercetin were the main flavonoids, and the isoflavones daidzein and coumestrol were found in only low levels in few collections. Delphinidin was the main anthocyanidin found, followed by petunidin, cyanidin, malvidin, pelargonidin, and peonidin. The wide variation observed in polyphenolic contents was more related to their genotype than to the color factor. These results show that some wild and weedy beans are good sources of phenolic compounds for use in breeding programs focused on nutrition and health.     

Genetic variation of Ethiopian and Eritrean sorghum (Sorghum bicolor (L.) Moench) germplasm assessed by random amplified polymorphic DNA (RAPD)

The extent and patterns of distribution of genetic variation among 80 sorghum (Sorghum bicolor (L.) Moench) germplasm accessions from Ethiopia and Eritrea were investigated using RAPD with 20 oligonucleotide primers. The primers generated a total of 147 polymorphic bands across the 80 accessions with a mean of 7.35 bands per primer. Estimation of the extent of variation by the Shannon-Weaver diversity index revealed an intermediate level of overall variation (H = 53), although the levels varied among regions of origin of the accessions. Partitioning of the total variation revealed considerable variation (77%) within the region of origin of the accessions and the remainder (23%) among regions of origin. Similarly, a large portion (94%) of the total variation was found within the adaptation zones compared to among the adaptation zones (6%). The results suggest a weak differentiation of the sorghum material both on regional and agro-ecological bases, which could be ascribed to the high rate of outcrossing in cultivated sorghum and its free natural hybridization with its wild and weedy relatives, as well as to seed movement by humans. The average genetic dissimilarity was found to be 36% among the 80 accessions and 13% among the 15 regions of origin. Cluster analysis failed to group accessions of the same region or the same adaptation zone, which further confirmed the weak differentiation of the material studied. The clustering pattern of the regions of origin was broadly concordant with previous clustering patterns obtained using morphological characters, in which regions with broad agro-climatic conditions were grouped together.     

A Novel Modified Endosperm Texture in a Mutant High‐Protein Digestibility/High‐Lysine Grain Sorghum (Sorghum bicolor (L.) Moench)

Development of high‐protein digestibility (HPD)/high‐lysine (hl) sorghum mutant germplasm with good grain quality (i.e., hard endosperm texture) has been a major research objective at Purdue University. Progress toward achieving this objective, however, has been slow due to challenges posed by a combination of genetic and environmental factors. In this article, we report on the identification of a sorghum grain phenotype with a unique modified endosperm texture that has near‐normal hardness and possesses superior nutritional quality traits of high digestibility and enhanced lysine content. These modified endosperm lines were identified among F₆ families developed from crosses between hard endosperm, normal nutritional quality sorghum lines, and improved HPD/hl sorghum mutant P721Q‐derived lines. A novel vitreous endosperm formation originated in the central portion of the kernel endosperm with opaque portions appearing both centrally and peripherally surrounding the vitreous portion. Kernels exhibiting modification showed a range of vitreous content from a slight interior section to one that filled out to the kernel periphery. Microstructure of the vitreous endosperm fraction was dramatically different from that of vitreous normal kernels in sorghum and in other cereals, in that polygonal starch granules were densely packed but without the typically associated continuous protein matrix. We speculate that, due to the lack of protein matrix, such vitreous endosperm may have more available starch for animal nutrition, and possibly have improved wet‐milling and dry‐grind ethanol processing properties. The new modified endosperm selections produce a range that approaches the density of the vitreous parent, and have lysine content and protein digestibility comparable to the HPD/hl opaque mutant parent.     

Matrix-assisted laser desorption/ionization time-of-flight mass spectrometry of heteropolyflavan-3-ols and glucosylated heteropolyflavans in sorghum [Sorghum bicolor (L.) Moench

Matrix-assisted laser desorption/ionization time-of-flight mass spectrometry (MALDI-TOF MS) was used to characterize the structural diversity of polyflavans in Ruby Red sorghum [Sorghum bicolor (L.) Moench]. Deionization of the polyflavan fractions with Dowex 50 x 8-400 cation-exchange resin and subsequent addition of cesium trifluoroacetate ((133)Cs) allowed the detection of exclusively [M + Cs](+) ions. MALDI-TOF MS of the polyflavans that eluate from Sephadex LH-20 columns with methanol and acetone detected a series of masses corresponding to heteropolyflavan-3-ols differing in degree of hydroxylation and nature of the interflavan bond (A-type and B-type). MALDI-TOF MS of the Sephadex-ethanol/methanol (v/v) eluate revealed a series of masses corresponding to heteropolyflavan-5-O-beta-glucosides that vary in the extent of hydroxylation and contain a flavanone (eriodictyol or eriodictyol-5-O-beta-glucoside) as the terminal unit. The combination of liquid chromatographic separation and MALDI-TOF MS to characterize sorghum polyflavans indicates that the structural heterogeneity is much greater than previously described.     

Physicochemical Properties and Molecular Structures of Starches from Millet (Pennisetum typhoides) and Sorghum (Sorghum bicolor L. Moench) Cultivars in Nigeria

Some physicochemical properties and molecular structures of starches from millet (Pennisetum typhoides, Doro and Gero) and sorghum (Sorghum bicolor, red and white) in Nigeria were examined. Starch granules of millet and sorghum were 3–14 μm and 4–26 μm in diameter, respectively. Millet cultivars had similar peak viscosities (204–205 RVU) on pasting, while sorghum showed similar minimum viscosities (155–156 RVU). The actual amylose content (%) calculated from iodine affinity (IA, g/100 g) was 20.1 and 21.4 for sorghum and 21.3 for millet. The IA of amylopectin was high (1.27–1.42) and its average chain lengths were 20–21 with β‐amylolysis limit of 56%. Amylopectins showed a polymodal molecular weight distribution on a molar basis. The distributions differed among the samples with a higher amount of larger molecules in Doro and red sorghum. Weight‐ and molar‐based distributions of debranched amylopectins on HPSEC were polymodal with weight‐based distribution showing presence of long chains. Peak DP values for A+B₁ and B₂+B₃ chain fractions were 13–16 and 42–43, respectively. The (A+B₁)/(B₂+B₃) ratio on molar basis (9.0–11.5) was similar to maize and rice amylopectins. Peak DP on molar‐based distribution for white sorghum and millet amyloses were similar (490–540) and the DP_n range was narrow (1,060–1,300), but weight‐based distribution profiles differed. The average chain lengths were 260–270 with 3.9–4.8 chains per molecule.