Uncertainty about estimating total returns of Atlantic salmon, Salmo salar to the Gander River, Newfoundland, Canada, evaluated using a fish counting fence

Abstract  For a number of rivers in Newfoundland, Atlantic salmon, Salmo salar L., is managed in relation to river-specific conservation spawning requirements. One such river is the Gander River, where between 1989 and 1999, the escapement of Atlantic salmon, a major factor in assessing the status of stock, was determined using a fish counting fence. In 2000, the counting fence was discontinued and alternative means of calculating total returns were explored. Regression and simulation methods, using relationships between total returns and salmon counts at an upstream tributary during 1989–99, formed the basis for estimates of returns for 2000, and the uncertainty around estimates. The accuracy of methods is evaluated by retrospective comparisons with actual total returns between 1989 and 1999. Estimates of total returns deviated from the actual by as much as 50–60%, depending on the method. Management implications of the approach are discussed.     

The effects of fluvial processes and habitat heterogeneity on distribution, growth and densities of juvenile Atlantic salmon (Salmo salar L.), with consequences on abundance of the adult fish

Abstract – The required freshwater habitats of juvenile Atlantic salmon ( Salmo salar ) are, in general, well known, but vary in quality, related to interacting effects of several variables, which may depend on different parts of a river system. Examples are given of ranges of densities and growth that can be found at various sites in eastern Canada, illustrating the biological and physico-chemical factors affecting production of juvenile salmon. Relative growth rates can indicate habitat quality and population densities. Salmon parr have negative effects on brook trout in riffle habitats. The effects of migrations within the river and of changes with stream succession on juvenile salmon production are illustrated with examples from a Newfoundland river. Migration of age-classes can be quantified from 'self-thinning' curves. Lakes have enhancing effects on downstream fluvial habitats, and, at least in Newfoundland, and probably in many boreal areas, the lacustrine proportion of the basin can be used as an index for deriving estimates of required spawning escapement. The factors described should be taken into account for more refined estimates of river production and management of the salmon resource.     

An examination of the use of angling data to estimate total returns of Atlantic salmon, Salmo salar, to two rivers in Newfoundland, Canada

Conservation spawning requirements (limits) for Atlantic salmon, Salmo salar L., have been developed for a number of rivers in Newfoundland. Status of stocks is evaluated against these limits and scientific advice and recommendations on levels of recreational catch provided to resource managers. A critical factor in this process is the determination of total returns. This has been accomplished for 30–40% of the rivers in question over the years through the use of fish counting fences and traps installed in fishways. In Newfoundland, it is not logistically or financially possible to operate fish counting facilities in all of the approximately 200 Atlantic salmon rivers. Thus angling catch data have been used as an alternative means of estimating total returns to rivers without counting facilities. Estimates of total returns were three to four times higher than the actual values for one of the two rivers studied and deviated from the actual by as much as 60% for the other. Management implications of the approach are discussed.     

Temporal spawning migration patterns of landlocked Atlantic salmon (Salmo salar) in a constructed stream

Landlocked Atlantic salmon (ouananiche, Salmo salar) spawning migration timing varies throughout its range and is influenced by a variety of environmental variables. This study examined the spawning migration time of landlocked Atlantic salmon in a small (4 ha) constructed stream linked to a large reservoir (32,600 ha) in Newfoundland, Canada. Salmon use of the stream was passively monitored using Passive Integrated Transponder (PIT) Tags from 2006 to 2012. Of the salmon tagged throughout the reservoir, 48% entered the stream during the spawning season and remained there for 18–36 days from late September to November before they returned to the reservoir. Most fish entered the stream at dusk (32%). The lunar cycle influenced the timing of migration each year. Mean stream discharge (cubic metres per second) influenced migration timing in some years, and water temperature appeared to have minimal impact on migration timing. Twenty per cent of fish migrated to the stream in multiple years and 51% of these individuals appeared to use the stream on a biennial or alternate year cycle. These results demonstrate that small constructed streams can attract salmon from throughout a large reservoir and can provide valuable habitat in areas where spawning habitat is limited.     

Interactions between naturalised exotic salmonids and reintroduced Atlantic salmon in a Lake Ontario tributary

Abstract – Atlantic salmon (Salmo salar) was once native to Lake Ontario, however, its numbers rapidly declined following colonisation by Europeans and the species was extirpated by 1896. Government agencies surrounding Lake Ontario are currently undertaking a variety of studies to assess the feasibility of reintroducing Atlantic salmon. We released hatchery‐reared adult Atlantic salmon into a Lake Ontario tributary to examine spawning interactions between this species and fall‐spawning exotic salmonids found in the same stream. Chinook salmon, coho salmon and brown trout were observed interacting with spawning Atlantic salmon in nearly one‐quarter of our observation bouts, with chinook salmon interacting most frequently. Whereas a previous investigation found that chinook salmon caused elevated agonistic behaviour and general activity by spawning Atlantic salmon, the present study found that interspecific courtship was the most common form of exotic interaction with spawning Atlantic salmon. In particular, we observed precocial male Chinook salmon courting female Atlantic salmon and defending the female against approach by male Atlantic salmon. We discuss the potential implications of these interactions on the Lake Ontario Atlantic salmon reintroduction programme.     

Inter-river, -annual and -seasonal variability in fecundity of Atlantic salmon, Salmo salar L., in rivers in Newfoundland and Labrador, Canada

Abstract  Fecundity is an integral component of the calculation of Atlantic salmon, Salmo salar L., egg depositions in rivers. Fecundity determinations can be time consuming and prohibitively expensive in terms of application on a broad scale. Consequently, where river specific and annual data are not available, default means are used in calculations in Newfoundland and Labrador. It is important therefore to know the extent of variability among rivers, years and seasons and the potential error involved in using default values. Annual fecundity data were available for one river in Labrador and nine rivers in Newfoundland. Fecundity was determined from ovaries collected in the recreational fishery in the summer for all 10 rivers. For three of these rivers, fecundity determined from summer sampling was compared with that obtained from sampling at time of spawning in autumn. There was significant variability in fecundity with length as a covariate among rivers, years and seasons. Mean number of eggs per female decreased between 8.3% and 29.0% from summer to autumn while mean number of eggs per cm decreased from 5.0% to 28.5%. Depending on the measure of relative fecundity used (no. of eggs kg⁻¹ or no. of eggs cm⁻¹), results of simulations showed that estimates of egg deposition incorporating defaults can deviate from those obtained by applying year-specific and river-specific values by 50–75%, without adjusting for the seasonal reduction in fecundity, and by 30–50% with an adjustment. A sensitivity analysis revealed that of three parameters used in the calculation of egg deposition (size, percent female and fecundity), fecundity was the most influential.     

Metabolic adaptations of oxidative muscle during spawning migration in the Atlantic salmon <Emphasis Type="Italic">Salmo salar</Emphasis> L.

The adaptability/plasticity of the highly oxidative red muscle in Atlantic salmon was demonstrated during spawning migration. Substrate concentrations and the enzymatic pathways of ATP production were examined in red muscle obtained from Atlantic salmon at different sites along their migratory route in the Exploits River, Newfoundland, Canada. Individuals were chronologically sampled from a seawater site, two sites upstream, and at spawning. The 20% decrease in salmon body weight during the later stages of migration was accompanied by large decreases (mg dry weight⁻¹) in both glycogen (P < 0.01) and total muscle lipid (P < 0.01). In contrast, water content and protein concentration (mg dry weight⁻¹) of the red muscle increased by 25 and 34%, respectively, at spawning. Enzymes of the glycolytic pathways demonstrated a significant (P < 0.001) decrease in maximal activity as migration proceeded whereas enzymes of the oxidative phosphorylation pathways, specifically the citric acid cycle enzymes, exhibited an increase (P < 0.001) in maximal activity at spawning. The antioxidant enzyme superoxide dismutase also demonstrated an increase (P < 0.001) in maximal activity during the latter stages of migration. These adaptations imply that the red epaxial muscle of Atlantic salmon has a more efficient means of oxidizing lipids, while minimizing free radical damage, during the later stages of migration and spawning, thereby potentially increasing post spawning survival.     

Environmental threats and conservation implications for Atlantic salmon and brown trout during their critical freshwater phases of spawning,egg development and juvenile emergence

Atlantic salmon Salmo salar L. and brown trout Salmo trutta fario L. are species of high socio-economic and ecological value. Declining populations make them target species of fisheries management. This paper reviews the direct effects of deficient longitudinal connectivity, changes in discharge, high water temperatures, oxygen depletion, changes in water chemistry and increasing loads of fine sediment on the critical life stages of spawning, egg incubation and emergence. It further provides an overview about the basic autecological requirements of Atlantic salmon and brown trout and summarises important thresholds of physico-chemical tolerances. This collection of information provides important baselines for assessing historical, ongoing and new threats relevant for the management of both species in fresh waters. Critical early-life stages of both species are almost identical, creating synergies in conservation and restoration. Seaward-migrating forms are exposed to further stressors, but improving starting conditions can also greatly improve their resilience.     

Influence of climate and abundance on migration timing of adult Atlantic salmon (Salmo salar) among rivers in Newfoundland and Labrador

Evidence mounts for the influence of climate variability on temporal trends in the phenology of many organisms including various species of fish. Accordingly, we examined variation in adult Atlantic salmon Salmo salar run timing in thirteen Newfoundland and Labrador rivers where returns were monitored at fishways or fish‐counting fences. Run timing varied significantly among rivers with the median date of return differing by up to 5 weeks. Duration of runs was generally short with most adults returning over a period of three to 5 weeks. A mixed model analysis incorporating a first‐order autoregressive error structure was used to generalise changes in run timing among all monitored rivers. Results indicated that the median date of return has advanced by almost 12 days over a 35‐year interval from 1978 to 2012, while several individual rivers have advanced by almost 21 days. The influence of climate on median timing was evident when the simultaneous effects of both climate and salmon abundance were controlled. We found earlier runs associated with overall warmer climate conditions on the Newfoundland and Labrador Shelf. Results contrast with those from the north‐east Atlantic where Atlantic salmon are returning later in some rivers coincident with warming climate conditions.     

The influence of LHRH analog on oocyte development and spawning in female Atlantic salmon,Salmo salar

A study of [D-Nal(2)⁶]LHRH analog implantation in female Atlantic salmon was conducted to determine the capacity of sustained releasing hormone treatment to stimulate ovary growth and induce spawning. Judging the reproductive status of individual females at the beginning of hormone treatment was accomplished by ovary biopsy techniques allowing in vitro oocyte analysis. The gonadotropin and steroid hormone patterns associated with oocyte development and spawning in the Atlantic salmon were determined from blood sampling throughout the study period. We conclude that implanted LHRH analog stimulates development of the oocyte during the vitellogenic phase of reproduction; it is again demonstrated that LHRH analog treatment is an effective tool for synchronizing spawning in the Atlantic salmon.     

A retrospective assessment of the flow regulation of the West Salmon River, Newfoundland, Canada

The Upper Salmon Hydroelectric Project in central Newfoundland, Canada, constructed in the early 1980s, affected the hydrology of the West Salmon River, a major spawning and juvenile rearing river for landlocked Atlantic salmon, Salmo salar L., and brook trout, Salvelinus fontinalis (Mitchill). A controlled flow release strategy, based on Tennant's Montana method, was developed to protect this habitat and prescribed a release of 40% of the mean annual flow (MAF) (2.6 m³ s^–1) between 1 June and 30 November and 20% of the MAF (1.3 m³ s^–1) from 1 December to 31 May. Studies were conducted to assess the impact of river regulation including: (1) a post-impoundment evaluation of the anticipated geomorphic and sedimentary characteristics; (2) monitoring of juvenile fish populations under regulation; and (3) a retrospective IFIM (instream flow incremental methodology) assessment. Studies provided evidence of the initial stages of river aggradation. Biological monitoring found no apparent effects of sediment deposition on spawning and egg incubation. However, densities of older age classes (parr, 1+ and greater) declined under regulation, possibly related to poor overwintering conditions under the lower winter flow. IFIM study results supported these observations and indicated that the prescribed flow regimen provided habitat conditions that would benefit salmon fry more than older age classes. This retrospective assessment suggested that future proposals for flow regulation in Newfoundland should consider the need for more dynamic flow management as well as to provide overwintering habitat for resident fish. Habitat–hydraulic models are preferred to standard setting approaches owing to more detailed analysis of habitat trade-offs as related to flow regulation.     

Chinook salmon impede Atlantic salmon conservation in Lake Ontario

Abstract – Non-native species can have substantial impacts on successful restoration of native species. Here, we examined effects of chinook salmon ( Oncorhychus tshawytscha ), an exotic species introduced to Lake Ontario to enhance recreational angling, on reintroduced Atlantic salmon ( Salmo salar ) in a Lake Ontario tributary stream. Field enclosure studies revealed that adult Atlantic salmon activity rate was elevated, nest establishment delayed and mortality rates higher in the presence of chinook salmon. These results suggest that chinook salmon in Lake Ontario streams during fall spawning could impede successful re-establishment of Atlantic salmon in the lake.     

A genetic comparison of sympatric anadromous and resident Atlantic salmon

Many studies have identified the importance of local adaptation in Atlantic salmon (Salmo salar) and the strong genetic differences that exist between allopatric or parapatric resident and anadromous populations. However, as truly sympatric migratory phenotypes of Atlantic salmon have not been studied, it remains unclear whether distinct genotypes previously associated with life history differences are maintained through reproductive isolation and subsequent genetic drift or through natural selection induced by different life history requirements. In this study, sympatric anadromous and resident Atlantic salmon were sampled from three Newfoundland (Canada) watersheds to evaluate the genetic divergence of these life history forms. Eight microsatellite loci were used to quantify genetic variation within and among populations. Metrics of genetic differentiation (exact tests for population differentiation, pairwise θ values) provide no evidence of genetic differentiation between some sympatric anadromous and resident phenotypes within a system with no history of segregation. In the remaining two watersheds, the observed differentiation appears to be a consequence of historical segregation rather than life history form. Nonetheless, these differences have been maintained in contemporary times for several generations. At broader spatial scales, resident salmon were more genetically divergent from one another than anadromous life history forms and were more closely related to anadromous salmon from within their watershed than to resident salmon from other watersheds. The study indicates that both life history forms can be maintained within a single population, but that sympatric populations of different life histories can maintain genetic differences for at least several generations after being reconnected.     

Assessment of an automated fish counter in a Canadian river

Abstract. In order to assess the accuracy and reliability of automated fish counters for counting adult Atlantic salmon, Salmo salar L., a 'Logie' resistivity counter was installed in late June 1989 in the control dam above the fishway in Northeast River, Placentia, Newfoundland, Canada. The counter was in operation for 26 days (1–26 July). The accuracy of daily counts recorded by the counter was verified by visual counts of Atlantic salmon released from a trap located downstream of the counter and immediately above the fishway. All the fish released from the trap had to pass over the counter. A total of 517 salmon (mainly grilse) was released from the trap and the net number of upstream migrants recorded by the counter was also 517. This is the first test and use of an open-channel counter in eastern Canada. The results suggest that some counting fences and fishways may be easily adapted for installation of automated counters and that counters offer a cost-effective means of counting adult Atlantic salmon.     

Discrete spatial dynamics in a marine broadcast spawner: Re-evaluating scales of connectivity and habitat associations in Atlantic cod (Gadus morhua L.) in coastal Newfoundland

We examined the spatial dynamics of Atlantic cod, Gadus morhua, through its life history on the northeast and southeast coasts of Newfoundland in order to delineate dispersal and critical habitat requirements as potential determinants of appropriate spatial scales for management. Hydroacoustic surveys across the northeast Newfoundland shelf in 1990, 1995, and 2000 showed the distribution of the remaining large aggregations of cod to be concentrated in inshore embayments, which is contrary to historic patterns. Inshore surveys on the south coast identified local spawning aggregations at specific geographic locations, to which adults homed in subsequent years. Dispersal of eggs and larvae to the offshore occurred during spring, but was localized (within bay) in the warm summer months. Abundance of age-0 cod increased with proximity to spawning location inshore, suggesting self-recruitment within local embayments. Age-2–3 juveniles actively selected structurally complex habitat at scales of less than tens of kilometers, with home ranges typically less than 10 ha. Juveniles were associated with specific habitat types, especially at age 0, in both lab and field experiments. Our results suggest that self-recruitment and critical life-history events (e.g., spawning, settlement, and maturity) may occur within local embayments, which currently assume much greater importance to overall cod stock dynamics than in the past. Given evidence for limited dispersal, and the inshore presence of critical habitat for early life-history stages, spatial management tools that consider local dynamics may provide a greater degree of protection for coastal Newfoundland cod than previously thought.     

Effects of hook and release on Atlantic salmon in the River Alta, northern Norway

The purpose of the study was to collect information on angling procedures and the effects of hook and release on Atlantic salmon in the River Alta, northern Norway, covering both grilse and multi-sea-winter salmon in a non-artificial setting with real anglers. Information on the angling procedure, handling of the fish and the condition of the fish at release was collected for individual salmon in catch logs (n=543, mean body length 82 cm), whereas physiological stress was studied in a sub-sample (n=15, mean body length 77 cm). To study post-release behaviour, survival and recapture rates, salmon were tagged with radio transmitters (n=30, mean body length 83 cm) and anchor T-tags (n=353, mean body length 79 cm). To evaluate the effects of the hook and release programme on the salmon population, number of spawning redds were recorded from a helicopter in 6 years during 1989–2000.

The results showed that at water temperatures 10.0–14.5 °C, a high proportion of the radio tagged salmon (97%) survived hook and release and stayed in known spawning areas during the spawning period. However, the behaviour after release seemed to be affected by hook and release. Only a small proportion (4%) of the anchor T-tagged salmon was caught more than once within the same season. Increased playing time, increased number of runs during the angling event, hooking in the throat, bleeding at the hook wound, increased handling time, air exposure and water temperature were factors that affected hooked and released Atlantic salmon negatively, either indicated by a poor condition at release, increased stress levels or unnatural behaviour after release. Number of spawning redds were more than doubled after the introduction of compulsory release of all angled salmon in Sautso (the upper 16% of the watershed inhabited by salmon) in 1998, which indicates that hook and release can be an effective management tool to enhance declining Atlantic salmon populations.     

Population decline in the endemic Atlantic salmon (Salmo salar) in Kapisillit River,Greenland

Atlantic salmon, Salmo salar L., is found throughout the North Atlantic, with thousands of rivers having spawning populations. In Greenland, spawning is limited to one river in West Greenland, the Kapisillit River (64?N), and the salmon are limited to the lower few kilometres of the system. Using mark–recapture, it was estimated the parr population was 5,953 individuals, and that the population size has declined by 52% since 1959. In spite of this decline, parr density remains high, being between 0.26 and 0.62 parr/m². Using a historical age‐length key, an estimated minimum of 635 smolt will have descended to the sea in 2017. These will be caught in a fishery currently subject to no regulatory measures and fishing remains the most likely driver of the population decline. The genetically distinct population is endemic to Greenland, and managers should implement measures to conserve this genetic integrity and local biodiversity.     

Offspring investment in wild Atlantic salmon (Salmo salar): relationships with smolt age and spawning condition

We investigated the independent effects of age at smolting and body condition at the time of spawning on egg production by female Atlantic salmon (Salmo salar). For a given body size, female salmon that had smolted as juveniles after 2 years in fresh water produced smaller, more numerous eggs than females that smolted 1 year later. Furthermore, fecundity (but not egg size) was related positively to maternal body condition at spawning. Given that age at smolting is closely related to juvenile growth rate; results from this study suggest that conditions experienced by female Atlantic salmon during both early life and adulthood have implications for the size and number of eggs that they produce.     

Migratory behaviour of adult wild and escaped farmed Atlantic salmon, Salmo salar L., before, during and after spawning in a Norwegian river

The migratory behaviour of adult wild and escaped farmed Atlantic salmon, Salmo salar L., before, during after spawning in the River Namsen, Norway, was analysed using radio telemetry. The fish were caught, radio tagged and released into the fjord between 7 and 25 km from the river mouth. A significantly higher proportion of wild (74%) than farmed (43%) salmon was subsequently recorded in the river. Wild salmon (33%) were more frequently captured in the sea and in rivers than farmed salmon (14%). The migration speed from release to passing a data logger 11 km upstream from the river mouth was not significantly different between wild (20.6 km day^?1) and farmed (19.8 km day^?1) salmon. Wild salmon tagged when water flow in the river was increasing had a significantly higher migration speed than wild salmon tagged when water flow was decreasing. This was not true for farmed salmon. Farmed salmon were distributed significantly higher up the river than wild salmon during spawning, although both types of fish were found together in spawning areas. Thus, there was no geographical isolation to prevent spawning between wild and escaped farmed salmon. Farmed salmon had significantly more and longer up- and downstream movements than wild salmon during the spawning period. Unlike farmed salmon, the number of riverine movements by wild salmon increased significantly when variation in water flow increased. A smaller proportion of wild (9%) than farmed (77%) salmon survived through the winter after spawning.     

Snorkelling as a method for assessing spawning stock of Atlantic salmon, Salmo salar

Abstract  Reliability of underwater snorkel counts of adult Atlantic salmon, Salmo salar L., was analysed in the tributaries of the River Teno, close to the spawning period. In small (width 5–20 m) rivers, the replicated total counts of salmon were reasonably precise (CV = 5.4–8.5%), while in the medium-sized river (width 20–40 m) the precision of the counting method was considerably lower (CV = 15.3%). Low precision in a medium sized river was also observed in an experiment using marked live fish where the observation efficiency varied between 36.4% and 70.0%. In a small river, the detection efficiency of artificial fish silhouettes (test salmon) was almost perfect in pools (98%), but decreased in rapids (84%). Separate counts of males, females, grilse and large salmon were usually more variable than total counts, indicating that divers were more capable of locating a fish than properly identifying its sex and sea-age. The behaviour of adult salmon was favourable to conduct snorkel counts, as fish normally stayed still, or after hesitating, moved upstream (>95%of the cases) when encountering a diver. The high observation efficiency (>90%) and precision, favourable behaviour of salmon and congruence between snorkel counts and catch statistics in small rivers suggest that reliable data on Atlantic salmon spawning stock can be collected by snorkeling provided that the environmental conditions are suitable and the divers are experienced.