Inhibition profile of trifludimoxazin towards PPO2 target site mutations

BACKGROUND

Target site resistance to herbicides that inhibit protoporphyrinogen IX oxidase (PPO; EC 1.3.3.4) has been described mainly in broadleaf weeds based on mutations in the gene designated protoporphyrinogen oxidase 2 (PPO2) and in one monocot weed species in protoporphyrinogen oxidase 1 (PPO1). To control PPO target site resistant weeds in future it is important to design new PPO-inhibiting herbicides that can control problematic weeds expressing mutant PPO enzymes. In this study, we assessed the efficacy of a new triazinone-type inhibitor, trifludimoxazin, to inhibit PPO2 enzymes carrying target site mutations in comparison with three widely used PPO-inhibiting herbicides.

RESULTS

Mutated Amaranthus spp. PPO2 enzymes were expressed in Escherichia coli, purified and measured biochemically for activity and inhibition kinetics, and used for complementation experiments in an E. coli hemG mutant that lacks the corresponding microbial PPO gene function. In addition, we used ectopic expression in Arabidopsis and structural PPO protein modeling to support the enzyme inhibition study. The generated data strongly suggest that trifludimoxazin is a strong inhibitor both at the enzyme level and in transgenics Arabidopsis ectopically expressing PPO2 target site mutations.

CONCLUSION

Trifludimoxazin is a potent PPO-inhibiting herbicide that inhibits various PPO2 enzymes carrying target site mutations and could be used as a chemical-based control strategy to mitigate the widespread occurrence of PPO target site resistance as well as weeds that have evolved resistance to other herbicide mode of actions. © 2022 BASF SE and The Authors. Pest Management Science published by John Wiley & Sons Ltd on behalf of Society of Chemical Industry.     

安徽省草地贪夜蛾对杀虫剂的敏感性和靶标突变检测

采用饲料混毒法测定了安徽省6个地区的草地贪夜蛾3龄幼虫对4种常用杀虫剂的敏感性,并对其靶标的抗性突变频率进行检测,以明确2020年迁入安徽省的草地贪夜蛾对杀虫剂的敏感性现状,为后续制定科学防控措施提供依据。结果显示,马鞍山和宿州草地贪夜蛾种群对氟苯虫酰胺分别产生了11.3倍和10.1倍的抗性;而对甲氨基阿维菌素苯甲酸盐、茚虫威和氯虫苯甲酰胺尚未产生抗性。且这4种杀虫剂的靶标基因均未检测到抗性位点突变情况。以上结果表明,6个地区的草地贪夜蛾对甲维盐、氯虫苯甲酰胺和茚虫威均较敏感,在田间防治中仍可轮换使用该类型杀虫剂。部分地区的草地贪夜蛾对氟苯虫酰胺产生了中等水平抗性,因此以后应该减少该药剂的使用频次。     

Improved management of Avena ludoviciana and Phalaris paradoxa with more densely sown wheat and less herbicide

Summary The effectiveness of crop competition for better weed control and reducing herbicide rates was determined for Avena ludoviciana and Phalaris paradoxa . Four experiments, previously broadcast with seeds of the two weeds in separate plots, were sown with three wheat densities, and emerged weeds were treated with four herbicide doses (0–100% of recommended rate). The measured crop and weed traits were first analysed across experiments for treatment effects. Grain yield and weed seed production data were then analysed using cubic smoothing splines to model the response surfaces. Although herbicide rate for both weeds and crop density for P. paradoxa had significant linear effects on yield, there was a significant non-linearity of the response surface. Similarly, herbicide rate and crop density had significant linear effects on weed seed production, and there was significant non-linearity of the response surface that differed for the weed species. Maximum crop yield and reduction in seed production of P. paradoxa was achieved with approximately 80 wheat plants m⁻² and weeds treated with 100% herbicide rate. For A. ludoviciana , this was 130 wheat plants m⁻² applied with 75% herbicide rate. Alternatively, these benefits were achieved by increasing crop density to 150 plants m⁻² applied with 50% herbicide rate. At high crop density, application of the 100% herbicide rate tended to reduce yield, particularly with the A. ludoviciana herbicide, and this impacted adversely on the suppression of weed seed production. Thus, more competitive wheat crops have the potential for improving weed control and reducing herbicide rates.     

Cross-resistance of horseweed (Conyza canadensis) populations with three different ALS mutations

BACKGROUND: Horseweed is a weed commonly found in agronomic crops, waste areas and roadsides. Resistance to ALS‐inhibiting herbicides in horseweed was first reported in 1993 in a population from Israel. Resistance to ALS‐inhibiting herbicides in horseweed is now widespread, but, as of now, the resistance mechanism has not been reported. RESULTS: Two of three populations evaluated (P116 and P13) were found to be uniform for resistance (>98% of individuals survived 8.8 g AI ha^?1 of cloransulam), whereas a third population, P525, contained about 85% resistant individuals. Cross‐resistance to cloransulam, chlorimuron, imazethapyr and bispyribac was observed in the P116 population. P525 and P13 were both sensitive to imazethapyr but resistant to chlorimuron, imazethapyr and bispyribac. Enzyme activity assays indicated that resistance in P13 was due to an altered target site. Southern blot analysis indicated that the ALS target site is encoded by a single copy gene. Overlapping ALS gene regions were amplified and sequenced from each population. Amino acid substitutions of Ser for Pro at position 197 (P197S) was detected from P13, Ala for Pro (P197A) was identified from P525 and substitution of Glu for Asp (D376E) at position 376 was found in P116. Molecular markers were developed to differentiate between wild‐type and resistant codons at positions 197 and 376 of horseweed ALS. CONCLUSION: Resistance to ALS‐inhibiting herbicides in horseweed is conferred by target‐site mutations that have also been identified in other weed species. Identification of the mutations within horseweed ALS gene sequence enables molecular assays for rapid detection and resistance diagnosis. Copyright © 2011 Society of Chemical Industry     

A SNaPshot assay for the rapid and simple detection of known point mutations conferring resistance to ACCase‐inhibiting herbicides in Lolium spp.

Evolution of resistance to herbicides in weeds is becoming an increasing problem worldwide. To develop effective strategies for weed control, a thorough knowledge of the basis of resistance is required. Although non‐target‐site‐based resistance is widespread, target site resistance, often caused by a single nucleotide change in the gene encoding the target enzyme, is also a common factor affecting the efficacies of key herbicides. Therefore, fast and relatively simple high‐throughput screening methods to detect target site resistance mutations will represent important tools for monitoring the distribution and evolution of resistant alleles within weed populations. Here, we present a simple and quick method that can be used to simultaneously screen for up to 10 mutations from several target site resistance‐associated codons in a single reaction. As a proof of concept, this SNaPshot multiplex method was successfully applied to the genotyping of nine variable nucleotide positions in the CT domain of the chloroplastic ACCase gene from Lolium multiflorum plants from 54 populations. A total of 10 nucleotide substitutions at seven of these nine positions (namely codons 1781, 1999, 2027, 2041 2078, 2088 and 2096) are known to confer resistance to ACCase‐inhibiting herbicides. This assay has several advantages when compared with other methods currently in use in weed science. It can discriminate between different nucleotide changes at a single locus, as well as screening for SNPs from different target sites by pooling multiple PCR products within a single reaction. The method is scalable, allowing reactions to be carried out in either 96‐ or 384‐well plate formats, thus reducing work time and cost.     

Response of Arabidopsis thaliana to 22 ALS inhibitors: baseline toxicity and cross-resistance of csr1-1 and csr1-2 resistant mutants

The baseline toxicity of 22 acetolactate synthase (ALS)-inhibiting herbicides and the cross-resistance patterns of chlorsulfuron- and imazapyr-resistant (R) lines on these 22 ALS-inhibiting herbicides were investigated using the model species Arabidopsis thaliana. The 22 herbicides consisted of 18 sulfonylureas (SU), three imidazolinones (IMI) and one triazolopyrimidine (TP). The ED₅₀ values (doses of herbicides required to reduce dry matter by 50%) of the post-emergence-treated Col and Ler susceptible (S) lines ranged from 22 to 4822 mg ha⁻¹ and from 17 to 3143 mg ha⁻¹ respectively. The csr1-1 chlorsulfuron-resistant line (substitution of Pro₁₉₇ to Ser) conferred a high resistance to the only TP tested as well as to nine SU herbicides (R:S ratio ≥30), a low resistance to two SU herbicides (R:S≥5 and <30) and little or no resistance to the three IMI and seven other SU herbicides (R:S <5). This result contradicts the expectation that an ALS mutation selected by an SU herbicide confers high cross-resistance to other SU herbicides. We found that the efficacy of specific ALS inhibitors was different for different species and therefore could not be predicted from our results with A. thaliana; however, the cross-resistance patterns in A. thaliana were highly correlated with cross-resistance patterns in unrelated species with the same resistance mutation. These results have implications for resistance management.     

Differences in the molecular basis of resistance to the cyclohexanedione herbicide sethoxydim in Lolium multiflorum

Resistance to the cyclohexanedione (CHD) herbicide sethoxydim was investigated in two UK Lolium multiflorum populations, Yorks A2 and PYL. Resistance screening experiments demonstrated a qualitative difference in the responses of the two populations to sethoxydim, suggesting that the molecular basis of resistance between them was different. After treatment, Yorks A2 plants were either alive (78% of sample tested) or dead (22% tested) but plants of the PYL population showed two further intermediate categories of response. The level of acetyl-CoA carboxylase (ACCase) insensitivity directly correlated with the degree of resistance at the whole plant level, indicating that the molecular basis of resistance is associated with differences in ACCase sensitivity in each population. Direct sequencing of the carboxyl transferase domain of the ACCase gene showed that an Ile-418-Leu substitution in the L. multiflorum chloroplastic ACCase (GenBank accession number AY710293 ) confers resistance to sethoxydim in Yorks A2. This corresponds to amino acid residue 1781 in the Alopecurus myosuroides full ACCase sequence. This is the first report of this mutation in this L. multiflorum, which has also been reported in four other grass-weeds, including L. rigidum. However, no amino acid substitutions were found to be specifically associated with the resistant phenotypes in the PYL population and the molecular basis of resistance in this population remains to be resolved.     

A molecular assay for the proactive detection of target site-based resistance to herbicides inhibiting acetolactate synthase in Alopecurus myosuroides

Acetolactate synthase (ALS) inhibitors are the most resistance‐prone herbicide group. Rapid resistance diagnosis is thus of importance for their optimal use. We formulate rules to use the derived cleaved amplified polymorphic sequence method to develop molecular tools detecting a change at a given codon, the nature of which is unknown. We applied them to Alopecurus myosuroides (black grass) to develop assays targeting ALS codons A122, P197, A205, W574 and S653 that are crucial for herbicide sensitivity. These assays detected W574L or P197T, or both substitutions, in most plants analysed from a field where ALS inhibitors failed after 3 years of use. Similar assays can easily be set up for any species. Given the rapidity of selection for resistance to ALS inhibitors, these assays should be very useful in proactive herbicide resistance diagnosis.     

Distribution of herbicide‐resistant acetyl‐coenzyme A carboxylase alleles in Lolium rigidum across grain cropping areas of South Australia

Resistance to the acetyl‐coenzyme A carboxylase (ACCase)‐inhibiting herbicides in Lolium rigidum is widespread in grain cropping areas of South Australia. To better understand the occurrence and spread of resistance to these herbicides and how it has changed with time, the carboxyl transferase (CT) domain of the ACCase gene from resistant L. rigidum plants, collected from both random surveys of the mid‐north of Southern Australia over 10 years as well as stratified surveys in individual fields, was sequenced and target site mutations characterised. Amino acid substitutions occurring as a consequence of these target site mutations, at seven positions in the ACCase gene previously correlated with herbicide resistance, were identified in c. 80% of resistant individuals, indicating target site mutation is a common mechanism of resistance in L. rigidum to this herbicide mode of action. Individuals containing multiple amino acid substitutions (two, and in two cases, three substitutions) were also found. Substitutions at position 2041 occurred at the highest frequency in all years of the large area survey, while substitutions at position 2078 were most common in the single farm analysis. This study has shown that target site mutations leading to amino acid substitutions in ACCase of L. rigidum are widespread across South Australia and that these mutations have likely evolved independently in different locations. The results indicate that seed movement, both within and between fields, may contribute to the spread of resistance in a single field. However, over a large area, the independent appearance and selection of target site mutations conferring resistance through herbicide use is the most important factor.     

Two major classes of target site insensitivity mutations confer resistance to organophosphate and carbamate insecticides

Interspecific comparisons of bioassay and biochemical data suggest two major patterns of target site resistance to carbamates and organophosphates. Pattern I resistance, which is generally more effective for carbamates, has been shown in two sub-species of mosquitoes to be due to a particular Gly-Ser mutation in the oxyanion hole within the active site of one of their two acetylcholinesterase enzymes. Intriguingly, different substitutions at the equivalent site confer organophosphate hydrolytic ability on other esterases responsible for metabolic resistance in some other species. In the case of the aphid, Myzus persicae, Pattern I resistance is due to a Ser-Phe mutation in the vicinity of the acyl pocket of acetylcholinesterase. Pattern II resistance is at least as effective for organophosphates as it is for carbamates and may even be specific to organophosphates in some cases. Molecular studies on this pattern of resistance in three higher Diptera show that it is due to changes that constrict the acetylcholinesterase active site gorge and limit binding of the insecticide to the catalytic residues at the base of the gorge. One case of Pattern II resistance in the mosquito, Culex tritaeniorhynchus, involves the same site near the acyl pocket of acetylcholinesterase, albeit a different substitution, as that involved in Pattern I resistance in M. persicae.     

The choice of target site is crucial in artificial miRNA-mediated virus resistance in transgenic Nicotiana tabacum

MicroRNAs (miRNAs) are negative regulators of gene expression via mRNA degradation or translational repression. The potential of artificial miRNAs (amiRNAs) as antiviral agents has been used in plant biotechnology. In this study, we designed eight amiRNAs derived from Potato Virus Y (PVY) Coat Protein RNA sequences and generated transgenic tobacco plants to express these amiRNAs to confer virus resistance against PVY. Together with transient assays, the hairpin amiRcp precursors that mimic natural miRNA precursor molecules proved to be effective in expressing amiRcps and silencing the target gene. Virus resistance assay revealed that not all amiRcps targeting viral CP sequence are equally effective in preventing PVY infection. Plants with amiRcp-8 targeting the 3′ end (nt735–nt754) region exhibited high virus resistance up to 64.69%. The amiRcp-6 harboring RNA sequence (nt567–nt586) induced the lowest percentages with only 17.05%. Besides, northern blots showed that there was a correlation between the resistance level and the accumulation of amiRNA expression. Furthermore, we used bioinformatics approach to predict the mRNA structure and found that targeting sequences of loose structure benefit to improve the virus resistance level. Our results indicate that the selection of appropriate target sequence is crucial for transgenic plant against virus and provide useful guideline for the design of pathogen-derived amiRNAs.     

A new molecular method for the rapid detection of a metamitron‐resistant target site in Chenopodium album

BACKGROUND: Resistance to photosystem II inhibitors—triazines (atrazine) and triazinones (metamitron, metribuzin)—in Chenopodium album L. is caused by the serine 264 to glycine mutation in the D1 protein. This mutation has been detected in C. album collections from Belgium with unsatisfactory metamitron efficacy in the field and was confirmed in greenhouse resistance bioassays. Incomplete herbicide efficacy in practice can also be caused by reduced uptake due to environmental conditions. Hence, for reliable differentiation and resistance identification, a rapid method for mutation detection in the target gene psbA is required. RESULTS: Dose–response curves obtained in herbicide greenhouse assays with metamitron‐resistant and ‐susceptible reference biotypes showed that a dose of 2 L ha^?1 metamitron was suitable for discrimination. A psbA PCR‐RFLP was developed, based on the presence of a FspBI restriction enzyme recognition site, covering D1 codon 264 in susceptible genotypes. A paper‐based DNA extraction allowed direct processing of leaf samples already in the field. In order to detect the mutation even in mixed seed samples, a nested PCR‐RFLP was also developed. CONCLUSION: The method allows exhaustive surveys screening C. album leaf or seed samples for the occurrence of the D1 Ser264Gly mutation to confirm or disprove metamitron resistance in the case of unsatisfactory control. Copyright © 2010 Society of Chemical Industry