Parental effects on the performance of cultivated × wild species hybrids in potato

Valuable genetic diversity in diploid wild Solanum species can be accessed through crosses to haploids (2n = 2×) of the tetraploid cultivated potato, Solanum tuberosum. Haploid-wild species hybrids segregate for the ability to tuberize in the field. In addition, they vary in male fertility, vine size, stolon length, and tuber size. In this study, three haploids were crossed with nine diploid wild Solanum species and 27 hybrid families were evaluated in the field for two years. The proportion of male fertile hybrid clones varied depending on the wild species parent. A large effect of the female parent was detected for vine size, stolon length, tuber size, percent tuberization, and percent plants selected for agronomic quality. An exceptional haploid (US-W4) was identified for the production of agronomically desirable haploid-wild species hybrids. In hybrids derived from US-W4, differences among wild species parents were observed for agronomic quality. Superior hybrids were produced by S. berthaultii and S. microdontum. Reciprocal crosses were evaluated for a subset of families. When the wild species was used as the female parent, male fertility was restored, but tuberization and tuber size were reduced. Careful selection of both haploid and wild species parents can result in a large proportion of fertile, agronomically desirable hybrid offspring.     

Chromosome locations of genes controlling ‘purple leaf base’ in rye and wheat

Summary Purple leaf base is expressed only if there is anthocyanin pigmentation in coleoptiles either in rye or in rye-wheat-additions. Genes controlling purple leaf base were found to be located on chromosomes 5R (An5), 4B (Ra2) and 6B (Ra3) using the trisomic set of rye cv. Esto and autoplasmic rye-wheat-additions, respectively.     

Genotype × environment interaction and genetic improvement for yield and yield stability of rainfed durum wheat in Iran

The genotype × environment (GE) interaction influences genotype selection and recommendations. Consequently, the objectives of genetic improvement should include obtaining genotypes with high potential yield and stability in unpredictable conditions. The GE interaction and genetic improvement for grain yield and yield stability was studied for 11 durum breeding lines, selected from Iran/ICARDA joint program, and compared to current checks (i.e., one durum modern cultivar and two durum and bread wheat landraces). The genotypes were grown in three rainfed research stations, representative of major rainfed durum wheat-growing areas, during 2005–09 cropping seasons in Iran. The additive main effect and multiplicative interaction (AMMI) analysis, genotype plus GE (GGE) biplot analysis, joint regression analysis (JRA) (b and S²di), six stability parameters derived from AMMI model, two Kang’s parameters [i.e., yield-stability (YSi) statistic and rank-sum], GGE distance (mean performance + stability evaluation), and two adaptability parameters [i.e., TOP (proportion of environments in which a genotype ranked in the top third) and percentage of adaptability (Ad)] were used to analyze GE interaction in rainfed durum multi-environment trials data. The main objectives were to (i) evaluate changes in adaptation and yield stability of the durum breeding lines compared to modern cultivar and landraces (ii) document genetic improvement in grain yield and analyze associated changes in yield stability of breeding lines compared to checks and (iii) to analyze rank correlation among GGE biplot, AMMI analysis and JRA in ranking of genotypes for yield, stability and yield-stability. The results showed that the effects due to environments, genotypes and GE interaction were significant (P < 0.01), suggesting differential responses of the genotypes and the need for stability analysis. The overall yield was 2,270 kg ha^?1 for breeding lines and modern cultivar versus 2,041 kg ha^?1 for landraces representing 11.2 % increase in yield. Positive genetic gains for grain yield in warm and moderate locations compared to cold location suggests continuing the evaluation of the breeding material in warm and moderate conditions. According to Spearman’s rank correlation analysis, two types of associations were found between the stability parameters: the first type included the AMMI stability parameters and joint regression parameters which were related to static stability and ranked the genotypes in similar fashion, whereas the second type consisted of the rank-sum, YSi, TOP, Ad and GGED which are related to dynamic concept of stability. Rank correlations among statistical methods for: (i) stability ranged between 0.27 and 0.97 (P < 0.01), was the least between AMMI and GGE biplot, and highest for AMMI and JRA and (ii) yield-stability varied from 0.22 (between GGE and JRA) to 0.44 (between JRA and AMMI). Breeding lines G8 (Stj3//Bcr/Lks4), G10 (Ossl-1/Stj-5) and G12 (modern cultivar) were the best genotypes in terms of both nominal yield and stability, indicating that selecting for improved yield potential may increase yield in a wide range of environments. The increase in adaptation, yield potential and stability of breeding lines has been reached due to gradual accumulation of favorable genes through targeted crosses, robust shuttle breeding and multi-locational testing.     

Inheritance of sugar and acid contents in the ripe berries of a tetraploid × diploid grape cross population

Pearl millet [Pennisetum glaucum (L.) R. Br.] is a major warm-season cereal, grown primarily for grain production in the arid and semi-arid tropical regions of Asia and Africa. Iron (Fe) and zinc (Zn) deficiencies have been reported to be a food-related primary health problem affecting nearly two billion people worldwide. Improving Fe and Zn densities of staple crops by breeding offers a cost-effective and sustainable solution to reducing micronutrient malnutrition in resource poor communities. An understanding of the genetics of these micronutrients can help to accelerate the breeding process, but little is known about the genetics and heterosis pattern of Fe and Zn densities in pearl millet. In the present study, ten inbred lines and their full diallel crosses were used to study the nature of gene action and heterosis for these micronutrients. The general combining ability (GCA) effects of parents and specific combining ability (SCA) effects of hybrids showed significant differences for both of the micronutrients. However, the predictability ratio (2σ²gca/(2σ²gca + σ²sca)) was around unity both for Fe and Zn densities, implying preponderance of additive gene action. Further, highly significant positive correlation between mid-parent values and hybrid performance, and no correlation between mid-parent values and mid-parent heterosis confirmed again the predominant role of additive gene action for these micronutrients. Barring a few exceptions with one parent, hybrids did not outperform the parents having high Fe and Zn levels. This showed that there would be little opportunity, if any, to exploit heterosis for these mineral micronutrients in pearl millet. In general, high Fe and Zn levels in both of the parental lines would be required to increase the probability of breeding high Fe and Zn hybrids.     

Yield and yield components of wheat and maize in wheat–maize intercropping in the Netherlands

Intercropping is widely used by smallholder farmers in developing countries, and attracting attention in the context of ecological intensification of agriculture in developed countries. There is little experience with intercropping of food crops in Western Europe. Yields in intercrops depend on planting patterns of the mixed species in interaction with local growing conditions. Here we present data of two years field experimentation on yield and yield components of a wheat–maize intercrop system in different planting configurations in the Netherlands. Treatments included sole crops of wheat (SW) and maize (SM), a replacement intercrop consisting of strips of six wheat rows alternating with two maize rows (6:2WM), as well as subtractive or additive designs, based on skip-row (6:0WM, 0:2WM) and add-row (8:2WM, 6:3WM) configurations. The land equivalent ratio (LER) of intercrops varied from 1.18 to 1.30 in 2013 and from 0.97 to 1.08 in 2014. Wheat grown in the border rows of wheat strips had higher ear number per meter row, greater kernel number per ear, and greater yield per meter row than wheat in inner rows and sole wheat, indicating reduced competition. Wheat in the border rows in the intercrops had, however, reduced thousand kernel weight and harvest index, indicating that competition in border rows intensified over time. Intercropping negatively affected maize biomass and thousand kernel weight, especially in add-row treatments. This study indicates that there is a potential yield benefit for the wheat–maize intercropping system under Western European growing conditions. However, the LER was affected by yearly variation in weather conditions and significantly greater than one in only one of the two years of the study.     

Occurrence of 2,3-dihydrofarnesoic acid, a spidermite repellent, in trichome secretions of Lycopersicon esculentum × L. hirsutum hybrids

The sesquiterpenoid spidermite repellent, 2,3-dihydrofarnesoic acid, occurs in trichome secretions of LA1363, an accession of the wild tomato Lycopersicon hirsutum. To better understand the inheritance of this sesquiterpene acid and its relationship with the quantity trichome secretions, interspecific crosses were made with five inbred lines of L. esculentum. Limited seed set and frequent seedling mortality led to small populations for each generation. Concentrations of residues in leaflet washes, comprised of trichome secretions and concentrations of 2,3-dihydrofarnsoic acids were determined in F1, F2 and backcross generations. Low concentrations of this acid occurred in F1 hybrids, suggesting there was dominance for low levels of the acid. However, concentrations of 2,3-dihydrofarnesoic acid were below minimum levels of detection in two backcross generations and in one of two F2 generations. Concentrations of leaflet wash residues were high on the L. hirsutum parent and low on the L. esculentum parents. Concentrations on hybrids were generally intermediate. However, high residue concentrations were present on a few F1 and F2 hybrids, Residue and 2,3-dihydrofarnesoic acid concentrations were not correlated in F1 or in backcross generations and were uncorrelated in one of two F2 generations. In the F2 obtained by sib-mating, residue concentrations were correlated with 2,3-dihydrofarnesoic acid concentrations. Although small population sizes and perhaps other factors did not allow delineation of genetic control of the presence or abundance of 2,3-dihydrofarnesoic acid, interspecific hybrids that produce 2,3-dihydrofarnesoic acid provide the experimental plants essential for research designed to provide a better understanding of the role of 2,3-dihydrofarnesoic acid in host-plant resistance of tomato to mites and insects.     

Inheritance of field resistance to Septoria tritici blotch in the wheat doubled-haploid population Solitär × Mazurka

Breeding for field resistance to Septoria tritici blotch (STB), caused by Mycosphaerella graminicola (anamorph: Septoria tritici), is the most suitable strategy for controlling this important disease of wheat. Although many Stb genes for resistance to single pathogen isolates have been identified in wheat, knowledge of their efficiency against natural fungal populations is lacking. In a quantitative-trait-locus (QTL) mapping approach in six environments and four locations, field resistance to STB was studied in a doubled-haploid population derived from a cross between the field-resistant cultivar Solitär and the susceptible cultivar Mazurka. After plant height as a disease escape trait was accounted for, five QTL with effects on STB response on chromosomes 5A, 6D and 7D explained 20 % of the genotypic variance; QTL × environment interactions were minor. Field resistance was conferred exclusively by alleles from Solitär, which was previously shown to carry the isolate-specific genes Stb6 and Stb11 as well as minor QTL detected with seven fungal isolates. Surprisingly, neither the Stb6 nor Stb11 isolate-specific genes nor minor QTL previously detected in Solitär were found to be involved in its field resistance. The study suggests that resistance breeding for STB should not rest solely on the deployment of Stb genes. Field tests are indispensable to show their efficacy and durability and to identify genes conferring partial field resistance to STB.     

Inheritance of anthocyanin content in the ripe berries of a tetraploid × diploid grape cross population

Variation patterns and inheritance of anthocyanin content in the ripe berries of a tetraploid × diploid table grape cross population were investigated in two successive years. The population segregated for three different ploid levels: dipolids, triploids, and tetraploids. A total of 28 different anthocyanins were detected and quantified in the progeny population. Transgressive segregation for the total anthocyanin content was observed in all the three ploid progeny populations. The total anthocyanin content increased as the ploid level increased. The broad sense heritabilities (H²) of the total anthocyanin content were all relatively high, ranging from 0.53 to 0.98, 0.57 to 0.97 and 0.43 to 0.94 in the diploid, triploid and tetraploid population, respectively. Our results suggested that the total anthocyanin content followed an additive inheritance model in this polyploid segregation population. We also observed that the relative contribution of individual anthocyanins to the total anthocyanin content varied significantly among different ploid populations, suggesting that genetic background has important impact on the accumulation of the individual anthocyanin compounds. These results will help develop better breeding strategies in a polyploid table grape breeding program for improving the content of anthocyanins, an important class of polyphenolics possessing antioxidant activities and many other health-related benefits.     

Mapping quantitative trait loci controlling pre-harvest sprouting resistance in a red × white seeded spring wheat cross

Hard white wheat (Triticum aestivum L.) is a value-added product because of its processing advantages over red wheat; however, white wheat tends to be more susceptible to pre-harvest sprouting (PHS). To identify quantitative trait loci (QTLs) associated with PHS tolerance, we developed a doubled haploid (DH) mapping population from the cross AC Domain (red seeded) × White-RL4137 (white seeded). A genetic map was constructed using microsatellite markers located on chromosome groups 3, 4, 5 and 6. A population of 174 DH lines was characterized for important aspects of PHS including sprouting index, germination index, Hagberg falling number and seed coat colour. A total of 11 QTLs were identified on group 3 chromosomes and on chromosome 5D. Seven QTLs associated with the PHS traits were found to be co-incident with seed coat colour on chromosomes 3A, 3B and 3D. The 5D PHS QTL was notable because it is independent of seed coat colour.     

Mapping QTLs with epistatic effects and QTL × treatment interactions for salt tolerance at seedling stage of wheat

Quantitative trait loci (QTLs) with additive (a), additive × additive (aa) epistatic effects, and their treatmental interactions (at and aat) were studied under salt stress and normal conditions at seedling stage of wheat (Triticum aestivum L.). A set of 182 recombinant inbred lines (RILs) derived from cross Xiaoyan 54 × Jing 411 were used. A total of 29 additive QTLs and 17 epistasis were detected for 12 traits examined, among which eight and seven, respectively, were identified to have QTL × treatment effects. Physiological traits rather than biomass traits were more likely to be involved in QTL × treatment interactions. Ten intervals on chromosomes 1A, 1D, 2A (two), 2D, 3B, 4B, 5A, 5B and 7D showed overlapping QTLs for different traits; some of them represent a single locus affecting different traits and/or the same trait under both treatments. Eleven pairs of QTLs were detected on seemingly homoeologous positions of six chromosome groups of wheat, showing synteny among the A, B and D genomes. Ten pairs were detected in which each pair was contributed by the same parent, indicating a strong genetic plasticity of the QTLs. The results are helpful for understanding the genetic basis of salt tolerance in wheat and provide useful information for genetic improvement of salt tolerance in wheat by marker-assisted selection.     

Detection of downy and powdery mildew resistance QTL in a ‘Regent’ × ‘RedGlobe’ population

One hundred and eighty six F₁ plants from a ‘Regent’ × ‘RedGlobe’ cross were used to generate a partial linkage map with 139 microsatellite markers spanning all 19 chromosomes. Phenotypic scores for downy mildew, taken over two years, confirmed a major resistance QTL (Rpv3) against downy mildew in the interval VVIN16-cjvh to UDV108 on chromosome 18 of ‘Regent’. This locus explained up to 62 % of the phenotypic variance observed. Additionally a putative minor downy mildew resistance locus was observed on chromosome 1 in one season. A major resistance locus against powdery mildew (Ren3) was also identified on chromosome 15 of ‘Regent’ in the interval UDV116 to VChr15CenGen06. This study established the efficacy of and validated the ‘Regent’-derived downy and powdery mildew major resistance genes/QTL under South African conditions. Closely linked SSR markers for marker-assisted selection and gene pyramiding strategies were identified.     

Effect of parental genotypes on haploid embryo and plantlet formation in wheat × maize crosses

Genotypic influence of both male and female parents on haploid production through interspecific crosses was studied using eight wheat and four maize genotypes. The average numbers of embryos and green haploid plantlets obtained per pollinated floret were 17.6% and 10.1%, respectively. Clear genotypic influence of the wheat genotype was detected, but heterozygosity of the wheat did not affect haploid production. Analogous response to anther culture and interspecific crossing was observed, still a wheat variety which did not respond to anther culture, produced 1.1 plantlets per pollinated spike upon maize pollination. This appears to be a major advantage of interspecific crossing compared to anther culture technique in wheat. Circumstantial evidence is presented for specific wheat × maize interaction on haploid plantlet formation. Rye chromatin enhanced haploid production but only in a complete 1B/1R substitution line. Ovaries with an embryo were found to be dispersed evenly all over the wheat spike, suggesting that within certain limits the developmental stage of ovaries and thus time of pollination within a spike are not as important as it was previously assumed. This revised version was published online in July 2006 with corrections to the Cover Date.     

Phenotypic segregation and relationships of agronomic traits in Monastrell × Syrah wine grape progeny

The aim of this work was to study the phenotypic segregation of different agronomic and fruit quality traits, and their relationships, in Monastrell × Syrah wine grape progeny. Twenty-two agronomic traits were evaluated and compared for three consecutive years in this progeny. The results show the phenotypic diversity existing in a cross between two different wine grape cultivars. Most of the phenological, productive, morphological, and enological parameters evaluated displayed continuous variation within the progeny, suggesting a polygenic inheritance. Some correlations between traits were detected by the Spearman correlation test, although high coefficients were not found for most of them. Cluster analysis of the progeny grouped the hybrids based on criteria with significance for wine grape breeding. Also, we investigated the relationship between the skin color and total content of anthocyanins with the VvmybA genotype, using the CAPS (Cleaved Amplified Polymorphic Sequence) marker 20D18CB9. The results show that hybrids with two copies of the functional color allele tend to have increased anthocyanins content. Based on this study, 14 genotypes were pre-selected from the breeding population for additional quality studies.     

Perennial growth and salinity tolerance in wheat × wheatgrass amphiploids varying in the ratio of wheat to wheatgrass genomes

Since wheat and other annual cereal crops are often harvested for forage instead of grain in California, replacing them with perennial crops could save energy and reduce the release of heat-trapping gases. To assess the potential for perennial crops based on wheat, biomass yield and stand persistence were studied for nine wheat×wheatgrass amphiploids (8x to 14x) and five wheatgrass species (2x to 10x) over three seasons in the Central Valley, California. The 8x and 10x amphiploids died after one biomass harvest and a single summer period. In contrast, the 14x amphiploids, which were sterile, continued producing biomass over the entire period of the trial. They were also highly salt-stress tolerant with little decline in biomass production in response to an increase in salinity from 100 and 250 mM NaCl in a solution-culture study. The development of a salt-stress-tolerant perennial crop based on wheat for the California-type climate will require either a substantial improvement in perennial growth of low-ploidy (8x) amphiploids or the development of technology for efficient vegetative propagation of the sterile high-ploidy (14x) amphiploids.     

Changes in the concept of genotype × environment interactions to fit agriculture diversification and decentralized participatory plant breeding: pluridisciplinary point of view

The standardization of environments (E) encouraged by modern society and by the productivist model of agriculture has resulted in the standardization of genotypes (G) thereby reducing G × E interaction. New societal values call for the diversification of agriculture to fit contrasted environments. This process can be depicted by four models defined by two axes, one socio-economic (individual logics versus collective governance), and the other agro-ecological (reductionist versus systemic approaches). These models differ in (i) their objectives (from improvement in yield to the empowerment of farmers), (ii) their specific expectations with respect to genotypes (from inherited genetic resources to varieties that represent genetic, ethical and social progress), (iii) their specific representations of the environment (E) (from a simple interaction between the bio-physical environment (B) and the crop management (C), to a complex interaction including the competences of the actors (A), outlets (O), regulations (R), society (S)), (iv) their particular relations between G and E (from G × E to G × B × C × A under evolving constraints represented by R × O × S). Taking this diversity into account changes the way plant improvement is considered. Thus, depending on the model, the order, interest and status of the five classic stages of plant improvement (setting objectives, creating variability, selecting, evaluating and disseminating) may be called into question. Between the existing analytical model (Model I) and a holistic model (Model IV) which remains to be developed, lies the challenge of ensuring the sustainability, efficiency and acceptability of plant breeding and resulting innovations. From a simple “statistical parameter” that we, as plant breeders, attempt to reduce, the G × E interaction is becoming an “objective” that we try to predict and valorize. Structuring the different components of E, G and G × E, enables us to extend the basic concept of representivity to both the cultivation conditions and the relational socio-economic positions of the actors involved.

Phenotypic diversity and relationships of fruit quality traits in inter-specific almond × peach backcrosses breeding progenies

Nineteen agrochemical traits of 20 almond inter-specific backcrosses progenies were evaluated and compared for three consequence years to find out their phenotypic diversity and determine the relationships of fruit quality traits in almond × peach backcrosses breeding progenies. The variation was observed for traits of phenology parameters (blooming time, ripening time), Physical parameters (fruit weight, width, height, shape, thickness, skin pubescences, colour and flower type), chemical parameters (total sugar content, soluble solids content and acidity) and sensory parameters (attractiveness, taste, and flavor) and yield. Many fruit characteristics that are important to breeders are present in this collection. A high variability was found in the evaluated almond progenies and significant differences were found among them in all studied quality attributes. Year-by-year variations were observed for majority of traits. A significant correlation was found among the fruit height, fruit width, skin pubescences and yield. Fruit height showed a significant positive correlation with fruit weight and fruit thickness and some other traits and a negative correlation with the titratable acidity, skin pubescences and fruit flavour. A high negative correlation was found between the fruit weight and titratable acidity (?0.8). Low coefficients were got between the flower colour and skin pubescences. In addition, principal component analysis it possible to established similar groups of genotypes depending on their quality characteristics and to study relationships among pomological traits in almond progenies evaluated.     

Occurrence of metaxenia and false hybrids in Brassica juncea L. cv. Kikarashina × B. napus

Imported genetically modified (GM) canola (Brassica napus) is approved by Japanese law. Some GM canola varieties have been found around importation sites, and there is public concern that these may have any harmful effects on related species such as reduction of wild relatives. Because B. juncea is distributed throughout Japan and is known to be high crossability with B. napus, it is assumed to be a recipient of B. napus. However, there are few reports for introgression of cross-combination in B. juncea × B. napus. To assess crossability, we artificially pollinated B. juncea with B. napus. After harvesting a large number of progeny seeds, we observed false hybrids and metaxenia of seed coats. Seed coat color was classified into four categories and false hybrids were confirmed by morphological characteristics and random amplified polymorphic DNA (RAPD) markers. Furthermore, the occurrence of false hybrids was affected by varietal differences in B. napus, whereas that of metaxenia was related to hybridity. Therefore, we suggest that metaxenia can be used as a marker for hybrid identification in B. juncea L. cv. Kikarashina × B. napus. Our results suggest that hybrid productivity in B. juncea × B. napus should not be evaluated by only seed productivity, crossability ought to be assessed the detection of true hybrids.