Microbial community structure and activity in a Colorado Rocky Mountain forest soil scarred by slash pile burning

Tree thinning and harvesting produces large amounts of slash material which are typically disposed of by burning, often resulting in severe soil heating. We measured soil chemical properties and microbial community structure and function over time to determine effects of slash pile burning in a ponderosa pine forest soil. Real time data were collected for soil temperature, heat flux, and soil moisture contents in one of two slash piles burned in April 2004. During the burn, soil temperatures reached 300 °C beneath the pile center and 175 °C beneath the pile edge. Slash pile burning increased soil pH, extractable N and P, and decreased total C levels within the first 15 cm of soil. Burning reduced soil bacterial biovolumes within the first 15 cm of soil and fungal biovolumes within the first 5 cm of soil. One month after the burn, soil microbial communities under the pile center were enriched in Gram-positive bacterial fatty acid markers compared to communities from under the pile edge and control (nonburned) soil. Fifteen months later, soil chemical properties had not returned to background levels, and microbial community structure in fire-affected soil, regardless of pile location, was distinct from communities of control soil. In fire-affected soil, concentrations of fungal fatty acid biomarkers were low and arbuscular mycorrhizal fungal biomarkers were absent, regardless of pile location. Slash pile burning also reduced fungal and bacterial respiration and resulted in large fluctuations in microbial potential N mineralization and immobilization activities. By altering soil properties important to soil conservation and plant reestablishment, slash pile burning negatively impacts forest ecosystems at localized scales.     

Impact of cattle grazing and inorganic fertiliser additions to managed grasslands on the microbial community composition of soils

A study was undertaken to determine if cattle grazing on managed grasslands had an impact on the microbial community composition of soils. Microbial community molecular profiles of bacteria, actinomycetes, pseudomonads and fungi were generated by polymerase chain reaction (PCR) amplification of rDNA sequences from community DNA isolated from soils. PCR products were profiled using denaturing gradient gel electrophoresis (DGGE) and analysed by principal co-ordinate analysis. PCR–DGGE profiles indicated that cattle grazing had an impact on the pseudomonad community structure only, and that the addition of inorganic nitrogen (N) fertiliser impacted on bacterial, actinomycete and pseudomonad community structure. There was no difference in the community profiles of fungi from grazed and N fertilised grassland plots. Analysis of phospholipid fatty acid (PLFA) profiles revealed that both cattle grazing and N fertiliser impacted on microbial community structure. The abundance of individual PLFAs differed between treatments, with bacterial (15:0), actinomycete (10Me18:0) and fungal (18:2ω6) PLFAs not affected directly by grazing cattle and N fertiliser, however, there were significant grazing–fertiliser interactions. Bacterial plate counts were highest in the N fertilised plots and fungal plate counts were highest in the cattle grazed plots. Analysis of molecular microbial community profiles with PLFA and background soil data revealed several significant correlations. Notably, soil pH was positively correlated with PCO1 of the pseudomonad community profiles and negatively correlated with the fungal PLFA 18:2ω6. Fungal DGGE profiles were negatively correlated with the fungal PLFA 18:2ω6, and bacterial and fungal plate counts positively correlated with each other. Correlation analysis using PC1 from PLFA profile data showed no significant relationship with soil organic matter, pH, total C and total N. The results indicate that cattle grazing and N fertiliser addition to grasslands impact on the community composition of specific groups of micro-organisms. The consequences of such changes in population structure may have implications regarding the dynamics of nutrient turnover in soils.     

Effects of prescribed burning and seasonal and interannual climate variation on nitrogen mineralization in a typical steppe in Inner Mongolia

Fires in grasslands significantly alter nutrient cycling processes. Seasonal climatic changes can interact with fire to further modify nutrient cycling processes. To investigate the effects of fire on soil nitrogen transformation processes and their seasonal change and interannual variability in a typical steppe in Inner Mongolia, we determined the rates of net nitrogen mineralization and nitrification over two growing seasons and a winter following a prescribed spring fire in May 2006. Fire significantly decreased rates of both net nitrogen mineralization and net nitrification during the first growing season and winter following burning. Cumulative net nitrogen mineralization in unburned and burned plots in the 2006 growing season was 133% and 183% higher, respectively, than in the drier 2007 growing season. Nitrogen mineralization apparently occurred in winter and the cumulative net nitrogen mineralization from October 2, 2006, to April 27, 2007 in unburned and burned plots amounted to 1.18 ± 0.25 g N m⁻² and 0.51 ± 0.08 g N m⁻², respectively. Cumulative net nitrogen mineralization was higher in a wet 2006 than in a dry 2007 growing season, indicating that the net N mineralization rate was sensitive to soil moisture in a dry season. Our study demonstrated that a one-time prescribed fire decreased net N mineralization rates only for a short period of time after burning while interannual variation in climate had more significant effects on the process of nitrogen mineralization.     

Relationships between microbial community structure and soil environmental conditions in a recently burned system

Most wildfires, even the most severe, burn at mixed intensities across a landscape, depending on local fuel loads, fuel moistures, and wind strength and direction. This heterogeneous patchwork of fire effects can influence the patterns of above- and belowground biotic recovery through altered environmental conditions, nutrient availability, and biotic sources for microbial and vegetative re-colonization. We quantified the effects of low- and high-severity fire 14 months post-burn on key environmental variables typically limiting to microbial activity. We characterized the soil microbial community structure through ester-linked fatty acid analysis (EL-FAME) and identified the soil environmental factors that best explain the pattern of microbial community profiles through canonical correspondence analysis (CCA). Low-severity burning caused no change in soil moisture, pH or temperature while high-severity burning caused an increase in soil moisture, temperature, and a decrease in pH levels, relative to the unburned sites. Soil respiration rates were significantly lower in both the low- and high-severity burn sites, relative to unburned sites, likely due to initial root and microbial death. Overall microbial biomass did not change with either low- or high-severity burning, but the microbial community ordination biplots showed separation of communities by fire, and slight separation by fire severity along three axes. This community separation was driven primarily by a decrease in fungal biomarkers (18:2ω6c, 18:3ω6c) with both low- and high-severity fire. Only 23% of the variation in the microbial community distribution could be explained by three environmental variables: soil pH, temperature, and carbon. These results suggest that the microbial communities in both the low- and high-severity burn sites are structurally different from the populations in the unburned sites.     

Organic matter status and the size, activity and metabolic diversity of the soil microbial community in the row and inter-row of sugarcane under burning and trash retention

The concentrations of organic C, labile organic fractions and the size and activity of the microbial community were measured to a depth of 30 cm below the plant row and at distances of 30 and 60 cm into the inter-row area under sugarcane under pre-harvest burning or green cane harvesting with retention of a crop residue (trash) mulch. Total root mass was similar under burning and trashing but under trashing there was a redistribution of roots towards the surface 0-10 cm in the inter-row space as roots proliferated beneath the trash mulch. Soil organic C content decreased in response to both increasing distance from the plant row (to a depth of 20 cm) and burning rather than trashing (to a depth of 10 cm). Declines in K₂SO₄-extractable C, light fraction C, microbial biomass C, basal respiration and aggregate stability in response to distance and burning were much more marked than those for organic C and occurred to a depth of 30 cm. Bulk density was greater under burnt than trashed sugarcane and was greater in the inter-row than row, particularly under burning. Heterotrophic functional diversity (measured by analysis of catabolic response profiles to 36 substrates) was also investigated. Principal component analysis of response profiles demonstrated that soils below the row and those under trashing at 30 cm out from this row were separated from the other soils on PC1 and the sample from the inter-row centre (60 cm out) under burning was separated from the others on PC2. Catabolic evenness was least for the latter soil. It was concluded that soil in the inter-row of burnt sugarcane receives few inputs of organic matter and that conversion to green cane harvesting with retention of a trash mulch greatly improves the organic matter, microbial and physical status of the inter-row soil.     

Effect of organic mulches on soil bacterial communities one year after application

The application of organic mulches as a soil cover is effective in improving the quality of soil. However, very little information is available on the effect of mulches on the soil microbial community. In this study, we investigated the effect of various organic mulches on soil dehydrogenase activity (DHA) and microbial community structures in the top 1 cm and 5 cm below the soil surface 1 year after application of the mulches. DHA was stimulated at both depths in plots mulched with grass clippings (GC), but was not significantly different from the control for the other mulch treatments. Fatty acid methyl ester (FAME) analysis and denaturing gradient gel electrophoresis (DGGE) of polymerase chain reaction-amplified 16S rDNA fragments were used to assess changes in the soil microbial community structure. Cluster analysis and principle component analysis of FAME profiles showed that only soil mulched with pine chips distinctively clustered from the other treatments. At the soil surface, bacterial DGGE profiles revealed that distinct shifts in several bacterial populations occurred in soils mulched with GC and eucalyptus yardwaste (EY), while DGGE profiles from soil at the 5 cm depth revealed no distinct changes. Changes in bacterial diversity at the soil surface under different mulches were calculated based on the number of bands in the DGGE profile using the Shannon-Weaver index of diversity ( H). Compared to the control ( H =0.9), the GC- and EY-treated soils showed slightly increased bacterial diversity, with an H of 1.1 and 1.0, respectively. These results indicate that the long-term effect of organic mulches on the soil microbial activity and community structure is highly dependent upon the type of mulch and is mostly exerted in the top few centimeters of the soil profile.     

DNA- versus RNA-based denaturing gradient gel electrophoresis profiles of a bacterial community during replenishment after soil fumigation

We compared the responsiveness and sensitivity to soil fumigation of DNA- and RNA-based analyses of a bacterial community. We first established an improved RNA extraction method using DNA as an adsorption competitor, because it is extremely difficult to extract nucleic acids from clay-rich volcanic ash soil (Andisol), which adsorbs nucleic acids. This novel method facilitated RNA extraction from 500 mg of Andisol for molecular analyses. Then we monitored 16S rDNA PCR and 16S rRNA RT-PCR denaturing gradient gel electrophoresis (DGGE) profiles of samples collected from a chloropicrin (CP)-treated field over 2 months. The difference between untreated control and CP-treated plots was detected clearly both in DNA- and RNA-based DGGE profiles after treatment. The temporal changes in DGGE profiles, however, differed between DNA- and RNA-based analyses in CP-treated plots. RNA-based DGGE showed quicker and greater changes in the bacterial community after CP treatment than did DNA-based DGGE, which showed similar trends to RNA-based DGGE but with a time lag. The extent of decrease in the diversity index (H′) and the change in principal response curves was larger in RNA-based analyses. These results indicate that the rDNA PCR-DGGE method also detects DNA of microbes no longer alive after fumigation, and that rRNA provides a more responsive biomarker than rDNA.     

Compositional shifts of bacterial groups in a solarized and amended soil as determined by denaturing gradient gel electrophoresis

Soil solarization is a widespread, nonchemical agricultural practice for disinfesting soils, which is often used in combination with organic amendment, and whose action represents an important factor impacting on soil bacterial communities structure and population dynamics. The present study was conducted to investigate whether and to which extent a 72-day plot-scale soil solarization treatment, either combined or not with organic amendment, could stimulate compositional changes in the genetic structure of indigenous soil bacterial communities. Soil solarization with transparent polyethylene film, in combination or not with farmyard manure addition, was carried out during a summer period on a clay loam agricultural soil located in Southern Italy. Soils from a four-treatment (NS, nonsolarized control soil; S, solarized soil; MA, manure-amended nonsolarized soil; MS, manure-amended and solarized soil) plot block were sampled after 0, 8, 16, 36 and 72 days. Compositional shifts in the genetic structure of indigenous soil bacterial communities were monitored by denaturing gradient gel electrophoresis (DGGE) fingerprinting of 16S rRNA gene fragments amplified from soil-extracted community DNA using primers specific for Bacteria, Actinomycetales, α- and β-Proteobacteria. Changes in soil temperature, pH, and electrical conductivity (EC_1:1) were also monitored from 0 to 72 days. Beneath the polyethylene film the average soil temperature at 8-cm depth reached 55 °C compared to 35 °C in nonsolarized soil. In general, without amendment both soil pH and EC_1:1 were not significantly affected by solarization, whereas in manured plots either variables were greatly increased (from 7.0 to 8.0 pH and from 271 to 3021 μS cm⁻¹ EC_1:1), and both showed long-lasting effects due to soil solar heating. The eubacterial DGGE profiles revealed that soil solarization was the main factor inducing strong time-dependent population shifts in the community structure either in unamended or amended soils. Conversely, the addition of organic amendment resulted in an altered bacterial community, which remained rather stable over time. A similar behaviour was also observed in the DGGE patterns of β-proteobacterial and actinomycete populations, and also, albeit to a lesser extent, in the DGGE profiles of α-Proteobacteria. An increased bacterial richness was evidenced by DGGE fingerprints in 16- and 36-day samplings, followed by a decrease appearing in 72-day samplings. This could be explained, other than by a direct thermal effect on soil microflora, by solarization-induced changes in the physico-chemical properties of soil microbial habitats or by other ecological factors (e.g. decreased competitiveness of dominating bacterial species, reduced grazing pressure of microfaunal predators, increased nutrient availability).     

Root exudate effects on the bacterial communities, CO2 evolution, nitrogen transformations and ATP content of rhizosphere and bulk soils

The ATP content, soil respiration, bacterial community composition, and gross N mineralization and immobilization rates were monitored under laboratory condition at 25 °C for 28 d in a model system where low molecular weight root exudates (glucose and oxalic acid) were released by a filter placed on the surface of a forest soil also treated with ¹⁵N, so as to simulate rhizosphere conditions. Periodically, the soil was sampled from two layers, 0-2 and 6-14 mm below the filter's surface, which were indicated as rhizosphere and bulk soils, respectively. The isotope dilution technique was used to determine the effect of these low molecular weight organic compounds (LMWOCs) on gross N mineralization and immobilization rates. From 0 to 3 d both glucose and oxalic acid amended soils showed a rapid evolution of CO₂, more pronunced in the latter treatment together with a decrease in the amount of mineral N of the rhizosphere soil, probably due to N immobilization. Nevertheless, these changes were accompanied by a very small increase in the net ATP content probably because the low C application rate stimulated microbial activity but microbial growth only slightly. A positive ‘priming effect’ probably developed in the oxalic acid amended soil but not in the glucose amended soil. Gross N mineralization and immobilization rates were only observed in the rhizosphere soil, probably due to the greater C and N concentrations and microbial activity, and were a little higher in both amended soils than in the control soil, only between 1 and 7 d. Both glucose and oxalic acid influenced the bacterial communities of the rhizosphere soil, as new bands in the DGGE profiles appeared at 3 and 7 d. Glucose induced lower changes in the bacterial community than oxalic acid, presumably because the former stimulated a larger proportion of soil microorganisms whereas the latter was decomposed by specialized microorganisms. Peaks of net daily soil respiration and net ATP content and the appearence of new dominant bacterial populations were shifted in time, probably because there was less ATP synthesis and DGGE patterns changed after complete substrate mineralization.     

Long term repeated burning in a wet sclerophyll forest reduces fungal and bacterial biomass and responses to carbon substrates

Soils from a long term experiment, established in 1972, incorporating replicated treatments of burning every 2 and 4 years with control plots were sampled in 2005 to determine the changes in microbial community structure, measured using phospholipid fatty acids (PLFAs) and functional diversity measured using multiple substrate induced respiration (SIR) tests (MicroResp™). Microbial biomass (total PLFA) in the 2 year burn treatments was 50% less than both the control and 4-year burn treatments. There was also concomitantly less respiratory activity which mirrored the known changes in soil C and substrate quality. Contrary to other studies soil bacterial PLFAs were reduced as much as fungal PLFAs in the 2-year burn and the short term (6 h) SIR of arginine, lysine, galactose and trehalose were significantly inhibited in the 2-year burn soils. The data suggest that a 4-year burn is a more sustainable practice for maintaining the original structure and function of the forest belowground ecosystem.     

Storage and dynamics of carbon and nitrogen in soil physical fractions following woody plant invasion of grassland

Woody plant invasion of grasslands is prevalent worldwide. In the Rio Grande Plains of Texas, subtropical thorn woodlands dominated by C₃ trees/shrubs have been replacing C₄ grasslands over the past 150 yr, resulting in increased soil organic carbon (SOC) storage and concomitant increases in soil total nitrogen (STN). To elucidate mechanisms of change in SOC and STN, we separated soil organic matter into specific size/density fractions and determined the concentration of C and N in these fractions. Soils were collected from remnant grasslands (Time 0) and woody plant stands (ages 10-130 yr). Rates of whole-soil C and N accrual in the upper 15 cm of the soil profile averaged 10-30 g C m⁻² yr⁻¹ and 1-3 g N m⁻² yr⁻¹, respectively, over the past 130 yr of woodland development. These rates of accumulation have increased soil C and N stocks in older wooded areas by 100-500% relative to remnant grasslands. Probable causes of these increased pool sizes include higher rates of organic matter production in wooded areas, greater inherent biochemical resistance of woody litter to decomposition, and protection of organic matter by stabilization within soil macro- and microaggregates. The mass proportions of the free light fraction (<1.0 g cm⁻³) and macroaggregate fraction (>250 μm) increased linearly with time following woody plant invasion of grassland. Conversely, the mass proportions of free microaggregate (53-250 μm) and free silt+clay (<53 μm) fractions decreased linearly with time after woody invasion, likely reflecting stabilization of these fractions within macroaggregate structures. Carbon and N concentrations increased in all soil fractions with time following woody invasion. Approximately half of the C and N accumulated in free particulate organic matter (POM) fractions, while the remainder accrued in stable macro- and microaggregate structures. Soil C/N ratios indicated that the organic C associated with POM and macroaggregates was of more recent origin (less decomposed) than C associated with the microaggregate and silt+clay fractions. Because grassland-to-woodland conversion has been geographically extensive in grassland ecosystems worldwide during the past century, changes in soil C and N storage and dynamics documented here could have significance for global cycles of those elements.     

Black carbon in a temperate mixed-grass savanna

Black carbon (BC) or charcoal is thought to represent an important component of the carbon cycle, but has seldom been quantified in soils. We quantified soil BC in a temperate mixed-grass savanna in the southern Great Plains using benzenecarboxylic acids as molecular markers for BC. Soils were collected from four fire treatments (repeated summer fires in 1992 and 1994; repeated winter fires in 1991, 1993 and 1995; alternate-season fires in winter 1991, summer 1992, and winter 1994; and unburned control) at 0-10 and 10-20 cm depth in 1996. Black carbon concentrations ranged from 50 to 130 g BC kg⁻¹ of soil organic carbon (SOC), or from 0.55 to 1.07 g BC kg⁻¹ of whole soil in this mixed grass savanna. The BC contribution to SOC increased significantly with soil depth (P<0.05). Repeated fires increased BC slightly compared to the unburned controls; however, the effects of repeated fires on BC were not statistically significant in this mixed-grass savanna. Results of this study provide estimates of BC concentrations for native, uncultivated mixed-grass savanna, and indicate that 2-3 fires have little effect on the size of the soil BC pool in this region.     

Controls on soil nitrogen cycling and microbial community composition across land use and incubation temperature

We conducted a laboratory incubation of forest (Scots pine (Pinus sylvestris) or beech (Fagus sylvatica)), grassland (Trifolium repens/Lolium perenne) and arable (organic and conventional) soils at 5 and 25 °C. We aimed to clarify the mechanisms of short-term (2-weeks) nitrogen (N) cycling processes and microbial community composition in relation to dissolved organic carbon (DOC) and N (DON) availability and selected soil properties. N cycling was measured by ¹⁵N pool dilution and microbial community composition by denaturing gradient gel electrophoresis (DGGE), phospholipid fatty acid (PLFA) and community level physiological profiles (CLPP). Soil DOC increased in the order of arable<grassland<forest soil while DON and gross N fluxes increased in the order of forest<arable<grassland soil; land use had no affect on respiration rate. Soil DOC was lower, while respiration, DON and gross N fluxes were higher at 25 than 5 °C. Gross N fluxes, respiration and bacterial biomass were all positively correlated with each other. Gross N fluxes were positively correlated with pH and DON, and negatively correlated with organic matter, fungal biomass, DOC and DOC/DON ratio. Respiration rate was positively correlated with bacterial biomass, DON and DOC/DON ratio. Multiple linear modelling indicated that soil pH, organic matter, bacterial biomass, DON and DOC/DON ratio were important in predicting gross N mineralization. Incubation temperature, pH and total-C were important in predicting gross nitrification, while gross N mineralization, gross nitrification and pH were important in predicting gross N immobilization. Permutation multivariate analysis of variance indicated that DGGE, CLPP and PLFA profiles were all significantly (P<0.05) affected by land use and incubation temperature. Multivariate regressions indicated that incubation temperature, pH and organic matter content were important in predicting DGGE, CLPP and PLFA profiles. PLFA and CLPP were also related to DON, DOC, ammonium and nitrate contents. Canonical correlation analysis showed that PLFA and CLPP were related to differences in the rates of gross N mineralization, gross nitrification and soil respiration. Our study indicates that vegetation type and/or management practices which control soil pH and mediate dissolved organic matter availability were important predictors of gross N fluxes and microbial composition in this short-term experiment.     

Tropical savannah woodland: effects of experimental fire on soil microorganisms and soil emissions of carbon dioxide

Burning of the vegetation in the African savannahs in the dry season is widespread and may have significant effects on soil chemical and biological properties. A field experiment in a full factorial randomised block design with fire, ash and extra grass biomass as main factors was carried out in savannah woodland of the Gambella region in Ethiopia. The microbial biomass C (C_mic) was 52% (fumigation-extraction) and 20% (substrate-induced respiration) higher in burned than unburned plots 12 d after burning. Both basal respiration and potential denitrification enzyme activity (PDA) immediately responded to burning and increased after treatment. However, in burned plots addition of extra biomass (fuel load) led to a reduction of C_mic and PDA due to enhanced fire temperature. Five days after burning, there was a short-lived burst in the in situ soil respiration following rainfall, with twice as high soil respiration in burned than unburned plots. In contrast, 12 d after burning soil respiration was 21% lower in the burned plots, coinciding with lower soil water content in the same plots. The fire treatment resulted in higher concentrations of dissolved organic C (24-85%) and nitrate (47-76%) in the soil until 90 d after burning, while soil NH₄⁺-N was not affected to the same extent. The increase in soil NO₃⁻-N but not NH₄⁺-N in the burned plots together with the well-aerated soil conditions indicated that nitrifying bacteria were stimulated by fire and immediately oxidised NH₄⁺-N to NO₃⁻-N. In the subsequent rainy season, NO₃⁻-N and, consequently, PDA were reduced by ash deposition. Further, C_mic was lower in burned plots at that time. However, the fire-induced changes in microbial biomass and activity were relatively small compared to the substantial seasonal variation, suggesting transient effects of the low severity experimental fire on soil microbial functioning.     

Evaluation of rice–legume–rice cropping system on grain yield,nutrient uptake,nitrogen fixation,and chemical,physical, and biological properties of soil

To achieve higher yields and better soil quality under rice–legume–rice (RLR) rotation in a rainfed production system, we formulated integrated nutrient management (INM) comprised of Azospirillum (Azo), Rhizobium (Rh), and phosphate-solubilizing bacteria (PSB) with phosphate rock (PR), compost, and muriate of potash (MOP). Performance of bacterial bioinoculants was evaluated by determining grain yield, nitrogenase activity, uptake and balance of N, P, and Zn, changes in water stability and distribution of soil aggregates, soil organic C and pH, fungal/bacterial biomass C ratio, casting activities of earthworms, and bacterial community composition using denaturing gradient gel electrophoresis (DGGE) fingerprinting. The performance comparison was made against the prevailing farmers’ nutrient management practices [N/P₂O₅/K₂O at 40:20:20 kg ha⁻¹ for rice and 20:30:20 kg ha⁻¹ for legume as urea/single super-phosphate/MOP (urea/SSP/MOP)]. Cumulative grain yields of crops increased by 7–16% per RLR rotation and removal of N and P by six crops of 2 years rotation increased significantly (P < 0.05) in bacterial bioinoculants-based INM plots over that in compost alone or urea/SSP/MOP plots. Apparent loss of soil total N and P at 0–15 cm soil depth was minimum and apparent N gain at 15–30 cm depth was maximum in Azo/Rh plus PSB dual INM plots. Zinc uptake by rice crop and diethylenetriaminepentaacetate-extractable Zn content in soil increased significantly (P < 0.05) in bacterial bioinoculants-based INM plots compared to other nutrient management plots. Total organic C content in soil declined at 0–15 cm depth and increased at 15–30 cm depth in all nutrient management plots after a 2-year crop cycle; however, bacterial bioinoculants-based INM plots showed minimum loss and maximum gain of total organic C content in the corresponding soil depths. Water-stable aggregation and distribution of soil aggregates in 53–250- and 250–2,000 μm classes increased significantly (P < 0.05) in bacterial bioinoculants-based INM plots compared to other nutrient management plots. Fungal/bacterial biomass C ratio seems to be a more reliable indicator of C and N dynamics in acidic soils than total microbial biomass C. Compost alone or Azo/Rh plus PSB dual INM plots showed significantly (P < 0.05) higher numbers of earthworms’ casts compared to urea/SSP/MOP alone and bacterial bioinoculants with urea or SSP-applied plots. Hierarchical cluster analysis based on similarity matrix of DGGE profiles revealed changes in bacterial community composition in soils due to differences in nutrient management, and these changes were seen to occur according to the states of C and N dynamics in acidic soil under RLR rotation.     

黑土长期定位试验原状土搬迁对土壤真菌群落多样性的影响

采用PCR-DGGE及其特异性条带克隆测序的方法,研究黑土长期定位试验原状土整体搬迁对土壤真菌群落结构多样性的影响。对同为小麦茬的搬迁前(2010年)和搬迁后(2013年)土壤真菌群落结构的研究表明:DGGE图谱中搬迁前后2个土层不同处理的样品间条带的数量和亮度存在部分变化;对DGGE图谱进行聚类分析可得,真菌群落结构在2个土层各处理中搬迁前后有部分变化,其中MNPK处理的变化较为显著;对DGGE图谱主成分分析结果可得,在0~20 cm土层中各处理虽然搬迁前和搬迁后产生分异,但搬迁前后的3年中处理间的分布规律相似,在20~40 cm土层中搬迁前和搬迁后MNPK和CK处理的分布规律发生了变化。搬迁前和搬迁后土壤真菌群落结构受到搬迁扰动的影响远小于耕作方式、植被类型、土壤肥力等的影响。     

Thermal shock and rain effects on soil surface characteristics: A laboratory approach

In addition to its direct impact on soil physical and chemical soil properties, fire produces a sudden change in plant cover. The post-fire impact of falling raindrops on unprotected soil surfaces is a major cause of detachment of aggregates, physical degradation and erosion of soils. The aim of this work was to analyse the effects of burning intensity and rain under factor-controlled conditions using unaltered soil samples. Assessed variables were soil organic carbon, aggregate stability and water repellency (0–1 cm mineral soil), as well as soil surface compaction and hydraulic conductivity. Unaltered topsoil cores were obtained in a mature Mediterranean gorse shrubland. We applied two successive treatments: burning (unburned, low and high burning levels) and rain (77 mm/h). The soil properties studied were scarcely affected by burning. However, soils showed high vulnerability to raindrop impact: a) aggregate stability and organic carbon were not significantly affected by burning; b) low intensity burning increased the frequency of samples with moderate water repellency, whereas unburned together with high burning showed more cases of low and extreme water repellency; c) the rain treatment produced a significant decrease in hydraulic conductivity although this response was independent of burning level; d) the highest reduction in hydraulic conductivity was observed in the samples with highest values prior to the rain treatment, and this was related to the highest organic carbon contents, and e) the reduction in hydraulic conductivity could be explained by the development of a thin and friable surface crust, although the cone penetrometer was not sensitive enough to detect this observed phenomenon.     

Effects of municipal solid waste compost amendments on soil enzyme activities and bacterial genetic diversity

Municipal solid waste (MSW) composts have been used to maintain the long-term productivity of agroecosystems and to protect the soil environment from overcropping, changes in climatic conditions and inadequate management; they also have the additional benefit of reducing waste disposal costs. Since MSW may contain heavy metals and other toxic compounds, amendments cannot only influence soil fertility, but may also affect the composition and activity of soil microorganisms. The effects of MSW compost and mineral N amendments in a 6-year field trial on some physical-chemical properties, enzyme activities and bacterial genetic diversity of cropped plots (Beta vulgaris-Triticum turgidum rotation) and uncropped plots were investigated. The compost was added at the recommended and twice the recommended dosage (12, 24 t ha⁻¹). Amendments of cropped plots with MSW compost increased the contents of organic C from 13.3 to 15.0 g kg⁻¹ soil and total N from 1.55 to 1.65 g kg⁻¹ soil. There were significant increases in dehydrogenase (9.6%), β-glucosidase (13.5%), urease (15.4%), nitrate reductase (21.4%) and phosphatase (9.7%) activities. A significant reduction in protease activity (from 3.6 to 2.8 U g⁻¹ soil) was measured when a double dose of compost was added to the cropped plots. No dosage effect was detected for the other enzymes. Changes in the microbial community, as a consequence of MSW amendment, were minimal as determined using denaturing gradient gel electrophoresis, rDNA internal spacer analysis and amplified ribosomal DNA restriction analysis of bacteria, archaea, actinomycetes, and ammonia oxidizers. This indicates that there was no significant variation in the overall bacterial communities nor in selected taxonomic groups deemed to be essential for soil fertility.     

Microbial biomass and activity at various soil depths in a Brazilian oxisol after two decades of no-tillage and conventional tillage

The advantages of no-tillage (NT) over conventional tillage (CT) systems in improving soil quality are generally accepted, resulting from benefits in soil physical, chemical and biological properties. However, most evaluations have only considered surface soil layers (maximum 0-30 cm depth), and values have not been corrected to account for changes in soil bulk density. The objective of this study was to estimate a more realistic contribution of the NT to soil fertility, by evaluating C- and N-related soil parameters at the 0-60 cm depth in a 20-year experiment established on an oxisol in southern Brazil, with a soybean (summer)/wheat (winter) crop succession under NT and CT. At full flowering of the soybean crop, soil samples were collected at depths of 0-5, 5-10, 10-20, 20-30, 30-40, 40-50 and 50-60 cm. For the overall 0-60 cm layer, correcting the values for soil bulk density, NT significantly increased the stocks of C (18%) and N (16%) and microbial biomass C (35%) and N (23%) (MB-C and -N) in comparison to CT. Microbial basal respiration and microbial quotient (qMic) were also significantly increased under NT. When compared with CT, NT resulted in gains of 0.8 Mg C ha⁻¹ yr⁻¹ (67% of which was in the 0-30 cm layer) and 70 kg N ha⁻¹ yr⁻¹ (73% in the 0-30 cm layer). In the 0-5-cm layer, MB-C was 82% higher with NT than with CT; in addition, the 0-30 cm layer accumulated 70% of the MB-C with NT, and 58% with CT. In comparison to CT, the NT system resulted in total inputs of microbial C and N estimated at 38 kg C ha⁻¹ yr⁻¹ and 1.5 kg N ha⁻¹ yr⁻¹, respectively. Apparently, N was the key nutrient limiting C and N stocks, and since adoption of NT resulted in a significant increase of N in soils which were deficient in N, efforts should be focused on increasing N inputs on NT systems.     

Soil microbial community composition as affected by restoration practices in California grassland

Agricultural practices have strong impacts on soil microbes including both the indices related to biomass and activity as well as those related to community composition. In a grassland restoration project in California, where native perennial bunchgrasses were introduced into non-native annual grassland after a period of intensive tillage, weeding, and herbicide use to reduce the annual seed bank, microbial community composition was investigated. Three treatments were compared: annual grassland, bare soil fallow, and restored perennial grassland. Soil profiles down to 80 cm in depth were investigated in four separate layers (0-15, 15-30, 30-60, and 60-80 cm) using both phospholipid ester-linked fatty acid (PLFAs) and ergosterol as biomarkers in addition to microbial biomass C by fumigation extraction. PLFA fingerprinting showed much stronger differences between the tilled bare fallow treatment vs. grasslands, compared to fewer differences between restored perennial grassland and annual grassland. The presence or absence of plants over several years clearly distinguished microbial communities. Microbial communities in lower soil layers were little affected by management practices. Regardless of treatment, soil depth caused a strong gradient of changing habitat conditions, which was reflected in Canonical Correspondence Analysis of PLFAs. Fungal organisms were associated with the presence of plants and/or litter since the total amount and the relative proportion of fungal markers were reduced in the tilled bare fallow and in lower layers of the grassland treatments. Total PLFA and soil microbial biomass were highly correlated, and fungal PLFA biomarkers showed strong correlations to ergosterol content. In conclusion, microbial communities are resilient to the grassland restoration process, but do not reflect the change in plant species composition that occurred after planting native bunchgrasses.