Storage method affects disease suppression of flax wilt induced by composts

Compost can have a disease suppressive effect, but compost research is constrained by the fact that repetition of experiments with a similar batch of compost is impossible, since storage affects the organic material including the microbial communities. The objective of this study was to test the hypothesis that differential changes in microbial community structure and associated microbial activities after various storage methods (drying, freezing and cooling) lead to differential changes in the disease suppressive ability of compost material with respect to Fusarium oxysporum f. sp. lini induced by mixes of composts with peat substrate (20/80%, vol./vol.). A significant (P<0.0001) storage method × compost interaction was found with respect to suppression of Fusarium wilt of flax, indicating that the effect of storage type on disease suppression is compost-dependent. For seven composts storage had no (13 cases) or a significantly positive effect (eight cases) on disease suppression and for 1 compost there was a significant negative effect of storage on disease suppression. Significant changes in microbial activity and 16S-rDNA DGGE banding patterns of the composts were observed as a result of all tested ways of storage and these changes could be related to changes in disease suppression: relatively strong changes in microbial activity and bacterial composition due to storage had a relatively strong effect on disease suppression. The cool storage treatment (4 °C) resulted in the least deviation in disease suppression from the fresh compost, although the freezing treatment gave the most reliable results with the lowest standard deviation.     

Identifying the characteristics of organic soil amendments that suppress soilborne plant diseases

Application of organic amendments has been proposed as a strategy for the management of diseases caused by soilborne pathogens. However, inconsistent results seriously hinder their practical use. In this work we use an extensive data set of 2423 studies derived from 252 papers to explore this strategy. First, we assess the capability of a specific organic amendment to control different diseases; second, we investigate the influence of organic matter (OM) decomposition on disease suppressiveness; and third, we search for physical, chemical and biological parameters able to identify suppressive OM. OM was found to be consistently suppressive to different pathogens in only a few studies where a limited number of pathogens were tested. In the majority of studies a material suppressive to a pathogen was ineffective or even conducive to other pathogens, suggesting that OM suppressiveness is often pathogen-specific. OM decomposition in many studies (73%, n = 426) emerged as a crucial process affecting suppressiveness. During decomposition, disease suppression either increased, decreased, was unchanged or showed more complex responses, such as ‘hump-shaped’ dynamics. Peat suppressiveness generally decreased during decomposition, while responses of composts and crop residues were more complex. However, due to the many interactions of contributing factors (OM quality, microbial community composition, pathosystem tested and decomposition time), it was difficult to identify specific predictors of disease suppression. Among the 81 parameters analysed, only some of the 643 correlations showed a consistent relationship with disease suppression. The response of pathogen populations to OM amendments was a reliable feature only for some organic matter types (e.g. crop residues and organic wastes with C-to-N ratio lower than ∼15) and for pathogens with a limited saprophytic ability (e.g., Thielaviopsis basicola and Verticillium dahliae). Instead, population responses of the pathogenic fungi Phytophthora spp., Rhizoctonia solani and Pythium spp. appeared unrelated to disease suppression. Overall, enzymatic and microbiological parameters, rather than chemical ones, were much more informative for predicting suppressiveness. The most useful features were FDA activity, substrate respiration, microbial biomass, total culturable bacteria, fluorescent pseudomonads and Trichoderma populations. We conclude that the integration of different parameters (e.g. FDA hydrolysis and chemical composition by ¹³C NMR) may be a promising approach for identification of suppressive amendments.     

Effect of sewage sludge on suppressiveness to soil-borne plant pathogens

The objective of this study was to evaluate the effect of sewage sludge on soil suppressiveness to the pathogens Fusarium oxysporum f. sp. lycopersici on tomato, Sclerotium rolfsii on bean, Sclerotinia sclerotiorum on tomato, Rhizoctonia solani on radish, Pythium spp. on cucumber, and Ralstonia solanacearum on tomato. Soil samples were collected from an experimental corn field in which sewage sludge had been incorporated once a year, since 1999. Sludge from two sewage treatment stations in Brazil (Franca and Barueri, SP) were applied at the rates of one (1N), two (2N), four (4N) and eight (8N) times the N recommended doses for the corn crop. Soil suppressiveness was evaluated by methods using indicator host plants, baits and mycelial growth. There was no effect of sewage sludge on soil suppressiveness to Fusarium oxysporum f. sp. lycopersici in tomato plants. For S. rolfsii, reduction of the disease in bean was inversely proportional to the dose of Franca sludge. The incidence of dead plants, caused by S. sclerotiorum, was directly proportional to sludge doses applied. For R. solani and R. solanacearum, there was a linear trend with reduction in plant death in soils treated with increasing amounts of sludge from Franca. There was an increase in the pathogen community of Pythium spp., proportional to the amounts of sewage applied. The effects of sewage sludge varied depending on the pathogen, methodology applied and on the time interval between the sewage sludge incorporation and soil sampling.     

Effect of successive cauliflower plantings and Rhizoctonia solani AG 2-1 inoculations on disease suppressiveness of a suppressive and a conducive soil

Disease suppressiveness against Rhizoctonia solani AG 2-1 in cauliflower was studied in two marine clay soils with a sandy loam texture. The soils had a different cropping history. One soil had a long-term (40 years) cauliflower history and was suppressive, the other soil was conducive and came from a pear orchard not having a cauliflower crop for at least 40 years. These two soils were subjected to five successive cropping cycles with cauliflower or remaining fallow in a greenhouse experiment. Soils were inoculated with R. solani AG 2-1 only once or before every crop. Disease decline occurred in all treatments cropped with cauliflower, either because of a decreased pathogen population or increased suppressiveness of the soil. Disease suppressiveness tests indicated that the conducive soil became suppressive after five subsequent cauliflower crops inoculated each cycle with R. solani AG 2-1. Suppressiveness of all treatments was measured in a seed germination test (pre-emergence damping-off) as well as by measuring the spread of R. solani symptoms in young plants (post-emergence damping-off). Results showed that suppressiveness was significantly stimulated by the successive R. solani inoculations; presence of the cauliflower crop had less effect. Suppressiveness was of biological origin, since it disappeared after sterilization of the soil. Moreover, suppressiveness could be translocated by adding 10% suppressive soil into sterilized soil. The suppressive soil contained higher numbers of culturable filamentous actinomycetes than the conducive soil, but treatments enhancing suppressiveness did not show an increased actinomycetes population. The suppressiveness of the soil samples did also not correlate with the number of pseudomonads. Moreover, no correlation was found with the presence of different mycoparasitic fungi, i.e. Volutella spp., Gliocladium roseum, Verticillium biguttatum and Trichoderma spp. The suppressive soil contained a high percentage of bacteria with a strong in vitro inhibition of R. solani. These bacteria were identified as Lysobacter (56%), Streptomyces (23%) and Pseudomonas (21%) spp. A potential role of Lysobacter in soil suppressiveness was confirmed by quantitative PCR detection (TaqMan), since a larger Lysobacter population was present in suppressive cauliflower soil than in conducive pear orchard soil. Our experiments showed that successive cauliflower plantings can cause a decline of the damage caused by R. solani AG 2-1, and that natural disease suppressiveness was most pronounced after subsequent inoculations with the pathogen. The mode of action of the decline is not yet understood, but antagonistic Lysobacter spp. are potential key organisms.     

Suppression of soil-borne pathogens of tomato by composts derived from agro-industrial wastes abundant in Mediterranean regions

We studied nine composts derived from wastes and by-products of the olive oil, wine, and Agaricus mushroom agro-industries. They were mixed with peat at 1:3 w w ⁻¹ ratios and comparatively evaluated in pot experiments to assess suppressiveness against soil-borne and foliar pathogens of tomato. All compost amendments demonstrated high levels of suppressiveness against Phytophthora nicotianae Breda de Haan in tomato, when they were applied directly after curing (T0) indicating the occurrence of a “general suppression phenomenon” (81–100% decrease in plant disease incidence). They were, however, relatively less effective when applied 9 months after curing (T1, 55–100% disease decrease). Suppressiveness against Fusarium oxysporum f.sp. radicis-lycopersici Jarvis & Shoemaker was relatively lower and varied widely among composts (8–95% and 22–87% decrease in plant disease incidence for T0 and T1, respectively). Three of the composts conferred induced systemic resistance against the foliar pathogen Septoria lycopersici Speg. Biotic properties were determined, including respiration, fluorescein diacetate hydrolysis, and β-glucosidase activity of composts. The comparative evaluation of the nine composts revealed no shared critical biotic or abiotic characteristics indicative of their suppressive effects on the soil-borne and foliar pathogens. The complex origin of compost suppressiveness is discussed and the implementation of individual evaluation of each compost product for a specific use is advocated.     

Tomato Fusarium wilt suppressiveness. The relationship between the organic plant growth media and their microbial communities as characterised by Biolog

Fusarium wilts are economically important diseases for which there are no effective chemical control measures. Biological control strategies are becoming efficient alternatives for controlling this disease. The suppressiveness to Fusarium oxysporum f. sp. lycopersici race 1 of grape marc compost and cork compost was evaluated in comparison to peat by using a susceptible cultivar of tomato (Lycopersicon esculentum cv. Marmande). Based on community level physiological profiles, different community structures were evident among the plant growth media evaluated. The peat microbial community, growth medium conducive to wilt, used mostly sugars, while those associated with both composts, the very suppressive grape marc and the moderately suppressive cork, used mostly carboxylic acids, amino acids, amines, phenolic compounds and polymers.     

Improving quality of composted biowaste to enhance disease suppressiveness of compost-amended, peat-based potting mixes

Biowaste can be converted into compost by composting or by a combination of anaerobic digestion and composting. Currently, waste management systems are primarily focused on the increase of the turnover rate of waste streams whereas optimisation of product quality receives less attention. This results in low quality composts that can only be sold on bulk markets at low prices. A new market for quality compost could be potting mixes for horticultural container-grown crops to partially replace non-renewable peat and increase the disease suppressiveness of potting mixes. We report here on the effect of wetsieving biowaste prior to composting on compost quality and on disease suppressiveness against the plant pathogen Pythium ultimum of peat mixes amended with this compost. The increased organic matter and decreased salt content of the compost allow for significantly higher substitution rates of peat by compost. In this study up to 60% v/v compost peat replacement did not affect cucumber growth. However, disease suppressiveness of the potting mixes strongly increased from 31 to 94% when the compost amendment rate was increased from 20 to 60%. It was shown that general disease suppression for P. ultimum can only be effective when the basal respiration rate is sufficiently high to support microbial activity. In addition, organic matter of the compost should reach a sufficient stability level to turn from disease conducive to disease suppressive. Increasing the compost addition from 20 to 60% did not significantly affect plant yield, yield variation were due to differences in nutrient levels. It can be concluded that compost from wetsieved biowaste has high potential to replace peat in growing media for the professional market.     

Screening of bacterial isolates from various European soils for in vitro antagonistic activity towards Rhizoctonia solani and Fusarium oxysporum: Site-dependent composition and diversity revealed

A cultivation-based approach was used to determine the in vitro antagonistic potential of soil bacteria towards Rhizoctonia solani AG3 and Fusarium oxysporum f. sp. lini (Foln3). Four composite soil samples were collected from four agricultural sites with previous documentation of disease suppression, located in France (FR), the Netherlands (NL), Sweden (SE) and the United Kingdom (UK). Similarly, two sites from Germany (Berlin, G-BR; and Braunschweig, G-BS) without documentation of disease suppression were sampled. Total bacterial counts were determined by plating serial dilutions from the composite soil samples onto R2A, AGS and King's B media. A total of 1,788 isolates (approximately 100 isolates per medium and site) was screened for antifungal activity, and in vitro antagonists (327 isolates) were found amongst the dominant culturable bacteria isolated from all six soils. The overall proportion of antagonists and the number of isolates with inhibitory activity against F. oxysporum were highest in three of the suppressive soils (FR, NL and SE). Characterization of antagonistic bacteria revealed a high phenotypic and genotypic diversity. Siderophore and protease activity were the most prominent phenotypic traits amongst the antagonists. The composition and diversity of antagonists in each soil was site-specific. Nevertheless, none of the antimicrobial traits of bacteria potentially contributing to soil suppressiveness analyzed in this study could be regarded as specific to a given site.     

Cause and duration of mustard incorporation effects on soil-borne plant pathogenic fungi

Two fungal plant pathogens, Rhizoctonia solani AG 2-2 and Fusarium oxysporum f.sp. lini, were studied in relation to general responses of soil fungi and bacteria following incorporation of Brassica juncea. Our aim was to understand to what extent the changes in the biological and physicochemical characteristics of the soil could explain the effects on the studied pathogens and diseases, and to determine the temporal nature of the responses. Short-term effects of mustard incorporation (up to 4 months) were investigated in a microcosm experiment, and compared with a treatment where composted plant material was incorporated. In a field experiment, the responses were followed up to 11 months after removal or incorporation of a mustard crop. In general, responses in the variables measured changed more after incorporation of fresh mustard material than after addition of similar amounts of composted plant material (microcosms) or after removal of the mustard crop (field). The soil inoculum potential of R. solani AG 2-2 decreased directly after incorporation of mustard, but increased later to disease levels above those in the untreated soil. Neither of these effects could be explained by changes in the population density of R. solani AG 2-2. Fusarium spp. were less influenced, although an increase in the suppressiveness to Fusarium wilt was observed after mustard incorporation as compared with the treatment where mustard was removed. The microbial responses to mustard incorporation were more pronounced for bacteria than for fungi. After an initial substantial increase, the bacterial density decreased but remained above the levels in the control treatment throughout the experimental periods. The bacterial community structure was modified up to 8 months after mustard incorporation. We conclude that incorporation of fresh mustard influences soil microbial communities, especially the bacteria, and has a potential to control the pathogenic activity of R. solani 2-2 on a short-term perspective. The time dependency in microbial responses is important and should be taken into consideration for the evaluation of the potential of Brassicas to control plant disease on a field scale.     

Agricultural waste-based composts exhibiting suppressivity to diseases caused by the phytopathogenic soil-borne fungi Rhizoctonia solani and Sclerotinia minor

On-farm composting is an efficient, environmentally safe and cost-effective process for recycle vegetable residues into productive cycles. Benefits of these composts could include their ability to mediate soil-borne plant pathogen suppression with a significant impact on eco-friendly crop management. In this work, on-farm composts were assayed for ability to control, both in vitro and in vivo, damping-off causing pathogens Rhizoctonia solani and Sclerotinia minor. Tomato and escarole-derived compost was the most suppressive and, furthermore, together with that derived from artichoke wastes, exhibited multi-suppressive activity. Compost communities, characterized at metabolic and global levels by Biolog system, microbial counting, CO₂-release and FDA hydrolysis rate, play a major role in compost-based biological control. The complete biotic inactivation by autoclaving composts, has, in fact, reduced or eliminated their ability in pathogen suppression. Solid state ¹³C CPMAS-NMR spectroscopy revealed that spectral areas typical for phenolic C, as well as methoxyl C, may be associated to suppressivity mechanism(s). These evidences suggested that the ecological relationships between organic carbon molecular distribution and microbial structure may contribute to discriminate suppressive composts from null and conducive ones. Nutritional microniches in compost may then have profound effects on the community functions, including those linked to the suppressiveness.     

Compost suppressiveness against Fusarium oxysporum was not reduced after one-year storage under various moisture and temperature conditions

The effect of storage conditions on compost suppressiveness against fusarium wilt of melon, caused by Fusarium oxysporum f. sp. melonis (FOM) was studied in relation to the dynamics of compost microbial activity and biodegradability. For this purpose, mature suppressive compost, prepared from tomato plants and separated cow manure, was divided into four portions and stored for one year under cool/warm (12 or 28 °C) or dry/wet (15-35 or 55-65% moisture content) conditions, in four different combinations: cool-dry, warm-dry, cool-wet and warm-wet. All composts retained and even enhanced their suppressive capacity during storage, with no significant differences among them by the end of the storage period. However, significant differences were found in the dynamics of some of the measured chemical and microbial properties. The microbial activity of composts stored under wet conditions was higher than that of those stored under dry condition, which resulted in a substantial decrease in dissolved organic matter content (expressed as dissolved organic carbon; DOC) and increase in its recalcitrance to biological degradation, decrease in basal heat emission, slower response to added glucose or citric acid, and higher NO₃ concentration, indicating increased nitrification under wet conditions. The DOC significantly correlated with several microbial properties as well as with compost suppressiveness of fusarium wilt of melon seedlings, and may be regarded as a most suitable general index for compost maturity. A best-subset multiple linear regression analysis revealed that the three best predictors, namely dissolved organic carbon (DOC), basal heat, and mesophilic bacterial counts, could explain as much as 83% of the total variance in compost suppressiveness. The generally agreed association between compost maturity and suppressiveness was verified in this case. It appears that compost microbial populations might compete and interfere with the saprophytic stage of FOM conidia, between germination and host invasion. In conclusion, it was demonstrated that compost suppressiveness against fusarium wilt of melon can be maintained for at least one year under a wide range of storage conditions, without any loss of suppressive capacity. This fact has positive logistical implications for the use of suppressive composts against FOM.     

Influence of soil type and indigenous pathogenic fungi on bean hypocotyl rot caused by Rhizoctonia solani AG4 HGI in Cuba

Calcisol, ferralsol and vertisol soils, representative of different bean production areas of Villa Clara province in Cuba, were selected to determine the impact of soil type on bean hypocotyl rot severity caused by Rhizoctonia solani AG4 HGI (isolate CuVC-Rs7). In inoculated autoclaved soil, hypocotyl rot was most severe in calcisol soil, followed by ferralsol soils and then vertisol soils. In inoculated natural soils, disease severity was lower in vertisol and calcisol soils and higher in ferralsol soil, indicating that biological factors are suppressing or stimulating the pathogenic efficiency of R. solani. Native binucleate Rhizoctonia AGF, Sclerotium rolfsii and R. solani AG 4 HGI were isolated from bean plants grown in natural calcisol, vertisol and ferralsol soils, respectively. Subsequent studies about the interaction between these fungi and R. solani indicated that they were involved in the variability of disease severity caused by R. solani. The addition of R. solani AG4 HGI (isolate CuVC-Rs7) into each autoclaved soil inoculated with binucleate Rhizoctonia or S. rolfsii resulted in a reduction of disease severity caused by this pathogen while in soils inoculated with native R. solani AG4 HGI, disease severity increased. Irrespective of fungal interactions, calcisol was always the most disease conducive soil and vertisol the most disease repressive soil. The mechanisms by which native pathogenic fungi could influence disease severity caused by R. solani are discussed.     

Microbial enrichment to enhance the disease suppressive activity of compost

Compost amended soil has been found to be suppressive against plant diseases in various cropping systems. The level and reproducibility of disease suppressive properties of compost might be increased by the addition of antagonists. In the present study, the establishment and suppressive activity of two fungal antagonists of soil-borne diseases was evaluated after their inoculation in potting soil and in compost produced from different types of organic waste and at different maturation stages. The fungal antagonists Verticillium biguttatum, a mycoparasite of Rhizoctonia solani, and a non-pathogenic isolate of Fusarium oxysporum antagonistic to fusarium wilt, survived at high levels (10³–10⁵ CFU g^–1) after 3 months incubation at room temperature in green waste compost and in potting soil. Their populations faded out in the organic household waste compost, especially in the matured product. In bioassays with R. solani on sugar beet and potato, the disease suppressiveness of compost increased or was similar after enrichment with V. biguttatum. The largest effects, however, were present in potting soil, which was very conducive for the disease as well as the antagonist. Similar results were found in the bioassay with F. oxysporum in carnation where enrichment with the antagonistic F. oxysporum had a positive or neutral effect. We foresee great potential for the application of antagonists in agriculture and horticulture through enrichment of compost or potting soil with antagonists or other beneficial micro-organisms.     

Response of soil microbial communities to compost amendments

Soil organic matter is considered as a major component of soil quality because it contributes directly or indirectly to many physical, chemical and biological properties. Thus, soil amendment with composts is an agricultural practice commonly used to improve soil quality and also to manage organic wastes. We evaluated in laboratory scale experiments the response of the soilborne microflora to the newly created soil environments resulting from the addition of three different composts in two different agricultural soils under controlled conditions. At a global level, total microbial densities were determined by classical plate count methods and global microbial activities were assessed by measuring basal respiration and substrate induced respiration (SIR). Soil suppressiveness to Rhizoctonia solani diseases was measured through bioassays performed in greenhouses. At a community level, the modifications of the metabolic and molecular structures of bacterial and fungal communities were assessed. Bacterial community level physiological profiles (CLPP) were determined using Biolog™ GN microtiter plates. Bacterial and fungal community structures were investigated using terminal restriction fragment length polymorphism (T-RFLP) fingerprinting. Data sets were analyzed using analysis of variance and ordination methods of multivariate data. The impact of organic amendments on soil characteristics differed with the nature of the composts and the soil types. French and English spent mushroom composts altered all the biological parameters evaluated in the clayey soil and/or in the sandy silty clay soil, while green waste compost did not modify either bacterial and fungal densities, SIR values nor soil suppressiveness in any of the soils. The changes in bacterial T-RFLP fingerprints caused by compost amendments were not related to the changes in CLPP, suggesting the functional redundancy of soil microorganisms. Assessing the density, the activity and the structure of the soil microflora allowed us not only to detect the impact of compost amendment on soil microorganisms, but also to evaluate its effect at a functional level through the variation of soil disease suppressiveness. Differences in disease suppressiveness were related to differences in chemical composition, in availability of nutrients at short term and in microbial composition due to both incorporation and stimulation of microorganisms by the compost amendments.     

Interaction between a fungal plant disease,fungivorous nematodes and compost suppressiveness

Abstract

We tested the hypothesis that the fungivorous nematodes Aphelenchoides spp. and Aphelenchus avenae can suppress damping-off caused by Rhizoctonia solani in cauliflower seedlings, and enhance the disease-suppressive effect of compost. In greenhouse experiments, we used two different composts mixed with peat (20% + 80%) and pure peat as growth substrates in growing pots. In each substrate, treatments were: (A) with R. solani and nematodes, (B) with R. solani, (C) with nematodes, (D) control without R. solani or nematodes. Treatment effects were measured as percentage of healthy seedlings 7, 10 and 14 days after start of the experiment. We conducted two different experiments with the treatments A–D; one with Aphelenchoides spp. and one with Aphelenchus avenae. Aphelenchoides spp.+R. solani (treatment A) had 85% healthy plants (= control without addition of fungi (D)) compared with 45% in R. solani without nematodes (B). Aphelenchus avenae suppressed damping-off significantly in all substrates, from almost 100% dead plants in peat with R. solani to 65% healthy plants in R. solani+A. avenae. One compost mixture had an intrinsic suppressive effect on damping-off, while plant health in the other compost mixture was not better than in 100% peat as growing substrate. There were no additive suppressive effects (enhancement) between nematode effects and the suppressive compost. The results demonstrate the ability of fungivorous nematodes to suppress plant diseases. The effects of fungivorous nematodes in combination with compost and other control measures on disease suppression need further attention. The usefulness of fungivorous nematodes in agriculture and horticulture is discussed.     

Humic acid bleaching by white-rot fungi isolated from biosolids compost

A screening assay for isolating humic-substances degrading fungi from biosolids compost at the thermophillic phase employed using plates containing 2,2′-azino-bis(3-ethylbenzothiazoline-sulfonic acid) (ABTS), MnCl₂ or the monoazo dye Acid Red 183. Two of the most active fungi out of 70 fungal strains isolated were identified based on rDNA sequences and designated Trametes sp. M23 and Phanerochaete sp. Y6 (accessions no. DQ408582 and DQ438910). These isolates, when compared to a model white-rot fungi T. versicolor and P. chrysosporium, showed the ability to bleach humic acids extracted from biosolids compost while growing under solid-state conditions using perlite as a solid support. T. versicolor and Trametes sp. M23 also exhibited the ability to bleach humic acids from a peat source. Interestingly, only Trametes sp. M23 bleached leonardite humic acid, which is considered to be a highly aromatic and stable type of natural organic matter. To the best of our knowledge, this is the first report of white-rot fungi being isolated and identified from thermophilic composts. Since these fungi are capable of degrading lignin and humic acid and were found active in organic-matter-degradation processes, we suggest that they may play a significant role in the degradation and transformation of these refractory substances during composting.     

Ecoenzymes as Indicators of Compost to Suppress Rhizoctonia Solani

Reports of disease suppression by compost are inconsistent likely because there are no established standards for feedstock material, maturity age for application, and application rate. The overall goal of the study was to evaluate a suite of biological indicators for their ability to predict disease suppression. Indicators included both commercial available methods for compost stability (Solvita?, respiration) and metrics of soil ecology not yet adopted by the compost industry (e.g., ecoenzymes, nematode community index). Damping-off by Rhizoctonia solani on radish was chosen as a model system given its global importance, competitiveness affected by carbon quality, and lack of disease management options for organic production. Biological indicators were evaluated for their ability to consistently differentiate among curing process, maturity, and feedstock material as a function of disease severity of a seedling bioassay and a compost extract assay to test competition with R. solani growth. Compost processed as vermicompost and anaerobic digestate were more suppressive against R. solani than windrow or aerated static pile. Mature composts were more suppressive than immature components. Feedstocks containing dairy manure and/or hardwood bark tended to have suppressive qualities. In contrast, poultry manure-based components were conducive to disease. Microbial ecoenzymes active on chitin and cellulose and nematode community indices were better predictors of disease suppressiveness than microbial respiration. These indicators are quicker than plant bioassays and could be adopted as tools to certify commercial products.     

Microbial Diversity and Bioactive Substances in Disease Suppressive Composts from India

The present study aimed to investigate microbial communities in seven Indian composts and their potential for biocontrol of Fusarium oxysporum f. sp. lycopersici. In addition, identification of bioactive substances in disease suppressive composts was also attempted. Composts were chosen based on disease suppressiveness and subjected to molecular microbial analyses. Total genomic DNA from the composts was extracted and amplified with polymerase chain reaction using primers targeting the 18S rRNA and 16S rRNA genes of fungi and bacteria, respectively. Denaturing gradient gel electrophoresis (DGGE) fingerprinting and DNA sequencing were used to identify the fungal and bacterial targets. Phylogenetic analysis of the fungal 18S rRNA ITS gene sequences showed that phylum Ascomycota was dominant in all composts, while in the bacterial 16S rRNA gene sequences, the phylum Proteobacteria was dominant. Some fungi in disease suppressive composts grouped phylogenetically close to F. oxysporum. Bacterial sequences with close similarity (>95% identity) with Actinobacterium showed a strong presence only in disease suppressive composts. Disease suppressive composts formed a separate group in the cluster analysis of 18S rRNA ITS and 16S rRNA gene sequences. Gas chromatography-time of flight-mass spectrometry was performed with compost extracts to determine if bioactive substances were present in disease suppressive composts. The analysis of compost organic matter showed a negative association of disease suppressiveness with phloroglucinol, sitosterol, and monoenoic fatty acid, while cholesterol and certain organic acids were positively associated with suppressiveness.     

Host status of 10 fungal isolates for two nematode species, Filenchus misellus and Aphelenchus avenae

The classification of nematodes in the family Tylenchidae into plant parasites, plant associates or fungal-feeders for community analyses, have been much discussed by nematode ecologists. For an appropriate classification, fungal-feeding habits in the family need to be studied. To evaluate the host status of 10 fungal isolates for Filenchus misellus (Tylenchidae) and Aphelenchus avenae (Aphelenchida, Aphelenchidae), population growth rates, body length and width and sex ratios of the nematodes were measured after 40-day culture on fungal colonies at 25 °C. For F. misellus, the fungi determined as good hosts were two Basidiomycota fungi (Agaricus bisporus, Coprinus cinereus), three Ascomycota fungi (Chaetomium cochlioides, Chaetomium funicola, Chaetomium globosum) and a plant-pathogenic fungus (Rhizoctonia solani) on the basis of nematode population growth rate and female body length. Interestingly Pleurotus ostreatus, known as a predaceous fungus for the other nematodes, was also a good host for F. misellus. While, for A. avenae, good hosts were four plant-pathogenic fungi (Fusarium oxysporum f. sp. conglutinans, F. oxysporum f. sp. cucumerinum, Pythium ultimum, R. solani) and A. bisporus. A. avenae was trapped and preyed upon by Pleurotus hyphae. In F. misellus, males were 7-21% of adults, but the ratio did not correlate significantly with the population growth rate. In A. avenae, no male occurred. Differences in habitat preference between Filenchus and Aphelenchus were explained on the basis of the host status and habitat preferences of the tested fungi.     

Compost type effects on nitrogen leaching from Inceptisol,Ultisol, and Andisol in a column experiment

Purpose  

To more efficiently utilize composts as N sources while minimizing the environmental impact, it is necessary to understand the effects of compost type on N mobility in compost-amended soil with different characteristics. The objectives of this study are to investigate the effects of livestock manure composts on N leaching from soils and to identify the principal physicochemical variables of the composts that affect N leaching.