Conversion of DDT to DDD by pathogenic and saprophytic bacteria associated with plants

Of 27 microorganisms examined, 23 plant pathogenic and saprophytic bacterial species were found to convert p,p' DDT to p,p' DDD under anaerobic conditions. The range of conversion of DDT (10 micrograms per milliliter) during an incubation of 14 days was from a trace to over 5 micrograms per milliliter, with the majority of the bacteria showing the greatest activity during the final 7-day period. There is evidence that metabolites of DDT other than DDD are also produced.     

Equatorial pacific seismic reflectors as indicators of global oceanographic events

The origin of a series of regionally correlatable seismic horizons in the Neogene sediments of the central equatorial Pacific is examined through seismic modeling and the detailed analyses of stratigraphic and physical property relationships in Deep Sea Drilling Project cores. These regionally traceable reflectors are synchronous; the younger reflectors are the direct result of carbonate dissolution events, the older ones of stratigraphically selective diagenetic processes. The changes in ocean chemistry associated with these events appear to be linked to global reorganizations of surface and bottom-water circulation patterns, the most dramatic of which are associated with reorganizations of North Atlantic bottom waters. These deepwater seismic horizons appear to correlate with the major events on the "relative sea-level" curve of Vail et al. for the Neogene.     

Stratigraphic sections, bedding sequences, and random processes

Both dependent and independent random processes can be used to study and synthesize stratigraphic sections and bedding sequences. Synthetic stratigraphic sections can be modeled to fit any geologic problem with a good correspondence between the synthetic and actual stratigraphic sections. To synthesize a sedimentary sequence, one needs only a transition procedure to go from one lithology or bedding type to another, and frequency distributions of thickness for the various lithologies. A sedimentation process with a "memory" is termed Markovian; if the past has no influence on either present or future sedimentation, it is called an independent trials process.     

Meter-scale morphology of the north polar region of Mars

Mars' north pole is covered by a dome of layered ice deposits. Detailed ( approximately 30 centimeters per pixel) images of this region were obtained with the High-Resolution Imaging Science Experiment on board the Mars Reconnaissance Orbiter (MRO). Planum Boreum basal unit scarps reveal cross-bedding and show evidence for recent mass wasting, flow, and debris accumulation. The north polar layers themselves are as thin as 10 centimeters but appear to be covered by a dusty veneer in places, which may obscure thinner layers. Repetition of particular layer types implies that quasi-periodic climate changes influenced the stratigraphic sequence in the polar layered deposits, informing models for recent climate variations on Mars.     

Sudden productivity collapse associated with the Triassic-Jurassic boundary mass extinction

The end-Triassic mass extinction is one of the five most catastrophic in Phanerozoic Earth history. Here we report carbon isotope evidence of a pronounced productivity collapse at the boundary, coincident with a sudden extinction among marine plankton, from stratigraphic sections on the Queen Charlotte Islands, British Columbia, Canada. This signal is similar to (though smaller than) the carbon isotope excursions associated with the Permian-Triassic and Cretaceous-Tertiary events.     

Gene product of v-fgr onc: hybrid protein containing a portion of actin and a tyrosine-specific protein kinase

The nucleotide sequence of the region of Gardner-Rasheed feline sarcoma virus (GR-FeSV) encoding its primary translation product, p70gag-fgr, has been determined. From the nucleotide sequence, the amino acid sequence of this transforming protein was deduced. Computer analysis indicates that a portion of P70gag-fgr has extensive amino acid sequence homology with actin, a eukaryotic cytoskeletal protein. A second region of P70gag-fgr is closely related to the tyrosine-specific kinase gene family. Thus, the v-fgr oncogene appears to have arisen as a result of recombinational events involving two distinct cellular genes, one coding for a structural protein and the other for a protein kinase.     

A chronology of Paleozoic sea-level changes

Sea levels have been determined for most of the Paleozoic Era (542 to 251 million years ago), but an integrated history of sea levels has remained unrealized. We reconstructed a history of sea-level fluctuations for the entire Paleozoic by using stratigraphic sections from pericratonic and cratonic basins. Evaluation of the timing and amplitude of individual sea-level events reveals that the magnitude of change is the most problematic to estimate accurately. The long-term sea level shows a gradual rise through the Cambrian, reaching a zenith in the Late Ordovician, then a short-lived but prominent withdrawal in response to Hirnantian glaciation. Subsequent but decreasingly substantial eustatic highs occurred in the mid-Silurian, near the Middle/Late Devonian boundary, and in the latest Carboniferous. Eustatic lows are recorded in the early Devonian, near the Mississippian/Pennsylvanian boundary, and in the Late Permian. One hundred and seventy-two eustatic events are documented for the Paleozoic, varying in magnitude from a few tens of meters to approximately 125 meters.     

cdc2 gene expression at the G1 to S transition in human T lymphocytes

The product of the cdc2 gene, designated p34cdc2, is a serine-threonine protein kinase that controls entry of eukaryotic cells into mitosis. Freshly isolated human T lymphocytes (G0 phase) were found to have very low amounts of p34cdc2 and cdc2 messenger RNA. Expression of cdc2 increased 18 to 24 hours after exposure of T cells to phytohemagglutinin, coincident with the G1 to S transition. Antisense oligodeoxynucleotides could reduce the increase in cdc2 expression and inhibited DNA synthesis, but had no effect on several early and mid-G1 events, including blastogenesis and expression of interleukin-2 receptors, transferrin receptors, c-myb, and c-myc. Induction of cdc2 required prior induction of c-myb and c-myc. These results suggest that cdc2 induction is part of an orderly sequence of events that occurs at the G1 to S transition in T cells.     

Precambrian columnar stromatolites in australia: morphological and stratigraphic analysis

The stratigraphic distribution in Australian Precambrian rocks of columnar stromatolites, organosedimentary structures formed by blue-green algae, has been investigated. Their morphology is being studied according to methods developed in Russia. The discovery of successive different assemblages supports not only regional but also intercontinental stratigraphic correlations which are in agreement with available isotopic datings.     

Radiocarbon Dates of Pre-Mankato Events in Eastern and Central North America

1) A group of samples from horizons previously correlated with the upper part of the Cary substage confirms the correlation as reasonable and is consistently related in time to the dates of the peat layer at Two Creeks and subsequent Mankato events. 2) A major glaciation affected the Great Lakes region beginning 25,000 or more yr ago and reaching its maximum extent about 18,000 yr ago. It is represented by drift correlated in Ohio with the Cary substage and, at least in part, with the Tazewell substage; in Illinois and adjacent states it is correlated with most of the Tazewell substage and with the Farmdale loess. 3) The ecology and other associations implied by the dated samples are more consistent with glacial than with nonglacial conditions. 4) The lower till at Sidney, Ohio (W-188), on which is developed a soil considered a correlative of the Fox series soil on gravels and also buried by till of the major glaciation of 25,000 to 18,000 yr ago, indicates an earlier glaciation extensively exposed in Ohio and believed to be an early Wisconsin event. Table 2. List of samples and dates arranged by age groups. See PDF for Table 5) An earlier glaciation, or glaciations, is implied at several localities by peat, gyttja, or wood more than 30,000 yr old, overlain by till. 6) The time interval between the middle group and the old group of samples, which has been determined within conservative radiocarbon limits to be greater than 3000 yr, is possibly of the order of 16,000 yr, as suggested by the depth of leaching at Sidney, Ohio. (The ages of all the samples discussed are listed in Table 2.) 7) An attempt should now be made to fix more closely the dates of the old samples and to reexamine in the field the stratigraphic sequence in the light of the radiocarbon dates discussed.     

Late colonization of Easter Island

Easter Island (Rapa Nui) provides a model of human-induced environmental degradation. A reliable chronology is central to understanding the cultural, ecological, and demographic processes involved. Radiocarbon dates for the earliest stratigraphic layers at Anakena, Easter Island, and analysis of previous radiocarbon dates imply that the island was colonized late, about 1200 A.D. Substantial ecological impacts and major cultural investments in monumental architecture and statuary thus began soon after initial settlement.     

植物水平基因转移研究进展

水平基因转移,一般分为细胞内部或者跨越物种边界的遗传物质交流。跨界直接介导方式,包括共生、内共生、寄生、嫁接等。细胞内的基因转移,主要包括细胞核与细胞器基因组间的相互渗透;跨越物种边界的遗传物质交流,主要涉及寄生与寄主植物的基因横向转移,寄主与寄生植物mRNA也会发生大规模的水平转移。基于基因组学研究进展,本研究综述了植物水平基因转移的迁移序列类型、迁移方向及迁移机制:首先,植物细胞的线粒体基因组能够整合细胞核转座元件以及叶绿体起源的tRNA基因,线粒体和叶绿体基因组的功能基因及间区序列能够迁移到核基因组;其次,植物种间,通过寄生、嫁接等方式转移大量的DNA(如线粒体基因、叶绿体基因和转座元件)和RNA(如mRNA)序列;迁移机制涉及到DNA介导和RNA介导方式,迁移方向包括单向和双向转移。迁移序列的基因功能活性研究是重要的后续研究方向。     

Fossil mammals from baja california: new evidence on early tertiary migrations

Ungulates belonging to the family Barylambdidae were found in the same geologic unit with, but stratigraphically above, a specimen assigned to the Tillodontia and above several molars of the perissodactyl cf. Hyracotherium sp. This arrangement is unusual, as in the well-documented faunas from the Rocky Mountain Region Barylambdidae are known only from the Paleocene, Tillodontia from the Paleocene and Eocene, while Hyracotherium is known only from the Eocene. The expected stratigraphic order would be, from lowest to highest, Barylambdidae, Tillodontia, and Hyracotherium. It is suggested that the Baja California assemblage is late Paleocene on the basis of the generalized molars of cf. Hyracotherium sp. and the characters of cf. Esthonyx sp.     

Erratum

As published, figure 2 in the report "Disruption of the terrestrial plant ecosystem at the Cretaceous-Tertiary boundary, western interior" by R. H. Tschudy et al. (7 Sept., p. 1030) contained two errors. The break in the stratigraphic column should have been 3 m, and the iridium concentration should have been in parts per trillion. The correct figure is reproduced below. [see figure in source PDF].     

Nucleotide sequence of the p21 transforming protein of Harvey murine sarcoma virus

Harvey murine sarcoma virus is a retrovirus which transforms cells by means of a single virally encoded protein called p21 has. We have determined the nucleotide sequence of 1.0 kilobase in the 5' half of the viral genome which encompasses the has coding sequences and its associated regulatory signals. The nucleotide sequence has identified the amino acid sequence of two additional overlapping polypeptides which share their reading frames and the carboxyl termini with p21 but which contain additional NH2-terminal amino acids.     

Comment on "Redefining the age of Clovis: implications for the peopling of the Americas"

Waters and Stafford (Reports, 23 February 2007, p. 1122) provided useful information about the age of some Clovis sites but have not definitively established the temporal span of this cultural complex in the Americas. Only a continuing program of radiometric dating and careful stratigraphic correlations can address the lingering ambiguity about the emergence and spread of Clovis culture.     

5S RNA synthesized by Escherichia coli in presence of chloramphenicol: different 5'-terminal sequences

Escherichia coli cells, grown in the presence of chloramphenicol, synthesize a low molecular weight RNA (CM-5S RNA) not bound to ribosomes which is similar to ribosomal 5S RNA. Oligonucleotide patterns derived from ribonuclease digests of 5S RNA and of CM-5S RNA are indistinguishable except that the 5'-terminal oligonucleotides differ. Whereas the nucleotide sequence of the 5'-terminus of normal 5S RNA is (p)U(p)G-, there are three alternate sequences of the 5'-terminus of CM-5S RNA: (p)U(p)U(p)G-, (p)U(p)U(p)U(p)G-, and (p)A(p)U(p)U(p)U(p)G-.     

High genetic variation and recombination events in the vicinity of non-autonomous transposable elements from ‘Candidatus Liberibacter asiaticus'

Two miniature inverted-repeat transposable elements(MITEs), MCLas-A and MCLas-B, were recently identified from ‘Candidatus Liberibacter asiaticus' known to be associated with citrus Huanglongbing(HLB, yellow shoot disease). MCLas-A was suggested as an active MITE because of its mobility. The immediate upstream gene of the two MITEs was predicted to be a putative transposase. The goal of this study is to analyze the sequence variation in the upstream putative transposase of MITEs and explore the possible correlation between sequence variation of transposase gene and MITE activity. PCR and sequence analysis showed that 12 sequence types were found in six major amplicon types from 43 representative ‘Ca. L. asiaticus' isolates from China, the United States and Brazil. Out of the 12 sequence types, three(T4, T5-2, T6) were reported for the first time. Recombination events were found in the two unique sequence types(T5-2 and T6) which were detected in all Brazilian isolates. Notably, no sequence variation or recombination events were detected in the upstream putative transposase gene of MCLas-A, suggesting the conservation of the transposase gene might be closely related with the MITE activity. Phylogenetic analysis demonstrated two well supported clades including five subclades were identified, clearly reflecting the geographical origins of isolates, especially that of Ruili isolates, S?o Paulo isolates and a few Florida isolates.