PGPRs of plum (Prunus domestica) rhizosphere enhance plant growth and antagonise fungal activity in vitro

Plant growth promoting rhizobacteria (PGPR) promote the plant growth by various direct and indirect mechanisms. The present study was undertaken to isolate and characterise the PGPRs of plum (Prunus domestica) rhizosphere in Pakistan. A total of 95 rhizobacteria were isolated, out of which 40 strains were selected on the basis of morphological, biochemical and Gram staining characteristics. The selected isolates were screened for in vitro plant growth promoting potential and were subsequently evaluated for host plant growth promotion. The selected isolates demonstrated strong lytic enzymatic activities and were able to produce ammonia, siderophore, Hydrogen cyanide along with capability of phosphate solubilisation. Moreover, the results showed a significant growth suppression of pathogenic Fusarium oxysporum and Rhizoctonia solani in an in vitro assay. The plant microbe interaction study was carried out using 11 most efficient rhizobacterial strains inoculated to roots of plum plants. The inoculated PGPRs significantly augmented the leaves number per shoot, shoot diameter, shoot length and plant height. The inoculation also significantly increased the chlorophyll contents of leaves, concentration of micro and macro nutrients compared with control. The current study shows the importance of these selected PGPRs as bio-fertilizer to improve the health and productivity of plum species in Pakistan.     

Cause and duration of mustard incorporation effects on soil-borne plant pathogenic fungi

Two fungal plant pathogens, Rhizoctonia solani AG 2-2 and Fusarium oxysporum f.sp. lini, were studied in relation to general responses of soil fungi and bacteria following incorporation of Brassica juncea. Our aim was to understand to what extent the changes in the biological and physicochemical characteristics of the soil could explain the effects on the studied pathogens and diseases, and to determine the temporal nature of the responses. Short-term effects of mustard incorporation (up to 4 months) were investigated in a microcosm experiment, and compared with a treatment where composted plant material was incorporated. In a field experiment, the responses were followed up to 11 months after removal or incorporation of a mustard crop. In general, responses in the variables measured changed more after incorporation of fresh mustard material than after addition of similar amounts of composted plant material (microcosms) or after removal of the mustard crop (field). The soil inoculum potential of R. solani AG 2-2 decreased directly after incorporation of mustard, but increased later to disease levels above those in the untreated soil. Neither of these effects could be explained by changes in the population density of R. solani AG 2-2. Fusarium spp. were less influenced, although an increase in the suppressiveness to Fusarium wilt was observed after mustard incorporation as compared with the treatment where mustard was removed. The microbial responses to mustard incorporation were more pronounced for bacteria than for fungi. After an initial substantial increase, the bacterial density decreased but remained above the levels in the control treatment throughout the experimental periods. The bacterial community structure was modified up to 8 months after mustard incorporation. We conclude that incorporation of fresh mustard influences soil microbial communities, especially the bacteria, and has a potential to control the pathogenic activity of R. solani 2-2 on a short-term perspective. The time dependency in microbial responses is important and should be taken into consideration for the evaluation of the potential of Brassicas to control plant disease on a field scale.     

Changes in nutrient content,enzymatic activities and microbial properties of lateritic soil due to application of different vermicomposts: a comparative study of ergosterol and chitin to determine fungal biomass in soil

In this experiment, vermicomposts, prepared from five different waste materials, were applied to acid lateritic soil under field conditions and soil samples were collected after 90 days to study the effect of vermicomposts on different chemical and biochemical. Results suggest that vermicompost prepared from paddy straw is most effective to improve nutrient content, enzymatic activities and microbial properties of lateritic soil. Vermicompost application significantly (P ≤ 0.05) increased the concentration of organic C, mineralizable N, available P and exchangeable K in soil. Amylase, protease, urease and acid phosphatase activities were also significantly (P ≤ 0.05) higher in vermicompost treated soils compared with the control. Both basal and substrate‐induced microbial respiration, microbial biomass C and N and fungal population in lateritic soil were increased due to vermicompost application. Ergosterol and chitin content were significantly (P ≤ 0.05) higher in vermicompost treated soils over the control. Application of vermicompost increased the proportion of fungal biomass in total soil microorganisms.     

Behaviour of arbuscular-mycorrhizal fungi on Vigna luteola growth and its effect on the exchangeable (32P) phosphorus of soil

 The effect of the inoculation of Glomus mosseae and Scutellospora fulgida, singly or in mixed inocula, was tested on the growth and mycorrhizal characteristics of Vigna luteola. Soil depletion by mycorrhizal inoculation was determined as exchangeable ³²PO₄. Five treatments were performed: non-inoculated control (C); inoculated with a suspension of microorganisms free of mycorrhizae (M); inoculated with S. fulgida plus microorganisms (Sf+M); inoculated with G. mosseae plus microorganisms (Gm+M) and a treatment inoculated with both S. fulgida and G. mosseae plus microorganisms (Sf+Gm+M). G. mosseae was the most efficient fungus in promoting growth of V. luteola. This fungus produced higher shoot dry weight, P uptake in shoots (P_shoot) and P_shoot/arbuscules ratio than the S. fulgida inoculum, even though percent arbuscular-mycorrhizal (AM) colonization was similar for the two single AM-inoculated treatments. The highest value of isotopically exchangeable P was recorded for treatment M (P<0.05). In comparison with M, Gm+M treatment reduced the different P pools more than Sf+M treatment. C_p values were reduced to half by Gm+M and Sf+M treatments and were minimum for the combined treatment. Pools A (exchangeable phosphate between 1 min and 1 day) and B (exchangeable phosphate between 1 day and 3 months) were reduced by Gm+M treatment in contrast to Sf+M, which left them unchanged. The depression of isotopically exchangeable P for all pools obtained for the Sf+Gm+M treatment suggested that specific characteristics of fungi caused differences in P absorption, which in addition was altered by the possible interactions among them, when multiple inocula were used in a soil low in native P. Received: 29 January 1999     

Slope length effects on microbial biomass and activity of eroded sediments

Purpose  

Due to climatic and topographic conditions, soil erosion is a major problem in Turkey; approximately 86% of the land is suffering from some degree of erosion. This study investigated the relationship between bare soil slope length and the erosion-induced degradation of soil quality and the loss of carbon (C) and nitrogen (N) from the microbial biomass in eroded sediment in the Western Black Sea Region of Turkey.     

Interactions between phosphorus availability and an AM fungus (Glomus intraradices) and their effects on soil microbial respiration, biomass and enzyme activities in a calcareous soil

The interactions between soil P availability and mycorrhizal fungi could potentially impact the activity of soil microorganisms and enzymes involved in nutrient turnover and cycling, and subsequent plant growth. However, much remains to be known of the possible interactions among phosphorus availability and mycorrhizal fungi in the rhizosphere of berseem clover (Trifolium alexandrinum L.) grown in calcareous soils deficient in available P. The primary purpose of this study was to look at the interaction between P availability and an arbuscular mycorrhizal (AM) fungus (Glomus intraradices) on the growth of berseem clover and on soil microbial activity associated with plant growth. Berseem clover was grown in P unfertilized soil (−P) and P fertilized soil (+P), inoculated (+M) and non-inoculated (−M) with the mycorrhizal fungus for 70 days under greenhouse conditions. We found an increased biomass production of shoot and root for AM fungus-inoculated berseem relative to uninoculated berseem grown at low P levels. AM fungus inoculation led to an improvement of P and N uptake. Soil respiration (SR) responded positively to P addition, but negatively to AM fungus inoculation, suggesting that P limitation may be responsible for stimulating effects on microbial activity by P fertilization. Results showed decreases in microbial respiration and biomass C in mycorrhizal treatments, implying that reduced availability of C may account for the suppressive effects of AM fungus inoculation on microbial activity. However, both AM fungus inoculation and P fertilization affected neither substrate-induced respiration (SIR) nor microbial metabolic quotients (qCO₂). So, both P and C availability may concurrently limit the microbial activity in these calcareous P-fixing soils. On the contrary, the activities of alkaline phosphatase (ALP) and acid phosphatase (ACP) enzymes responded negatively to P addition, but positively to AM fungus inoculation, indicating that AM fungus may only contribute to plant P nutrition without a significant contribution from the total microbial activity in the rhizosphere. Therefore, the contrasting effects of P and AM fungus on the soil microbial activity and biomass C and enzymes may have a positive or negative feedback to C dynamics and decomposition, and subsequently to nutrient cycling in these calcareous soils. In conclusion, soil microbial activity depended on the addition of P and/or the presence of AM fungus, which could affect either P or C availability.     

Evaluation of plant growth promoting activities of microbial strains and their effect on growth and yield of chickpea (Cicer arietinum L.) in India

The aims of our study were to enhance growth, yield and disease control of chickpea by various combinations of microbial strains (Mesorhizobium, Azotobacter chroococcum, Pseudomonas aeruginosa and Trichoderma harzianum). Pseudomonas and Trichoderma showed positive IAA (indole-3-acetic acid) production, phosphate solubilisation and antagonistic activities against Fusarium oxysporum and Rhizoctonia solani as compared to other strains. In two year investigations, tetra-inoculants have shown significant growth attributes, yield and phytopathogen growth inhibition followed by tri-inoculants than control. Therefore, tetra-inoculants (Mesorhizobium-Azotobacter-Pseudomonas-Trichoderma) may be used as efficient biofertilizer and bio-control agent for chickpea production (Cicer arietinum L.) in eastern Uttar Pradesh.     

Effects of inoculation with ectomycorrhizal fungi on microbial biomass and bacterial functional diversity in the rhizosphere of Pinus tabulaeformis seedlings

This study investigated the effects of inoculation with three individual ectomycorrhizal (ECM) fungal species on soil microbial biomass carbon and indigenous bacterial community functional diversity in the rhizosphere of Chinese pine (Pinus tabulaeformis Carr.) seedlings under field experimental conditions. The results showed that ECM fungal inoculation significantly increased the ectomycorrhizal colonization compared with non-inoculated seedlings. ECM fungal inoculations have higher soil microbial biomass carbon than that of control, ranging from 49.6 μg C g^?1 dry soil in control to 134.02 μg C g^?1 dry soil in treatment inoculated with Boletus luridus Schaeff ex Fr. Multivariate analyses (PCA) of BIOLOG data revealed that the application of ECM fungi significantly influenced bacterial functional diversity in the rhizosphere of P. tabulaeformis seedlings. The highest average well-color development (AWCD) and functional diversity indices were also observed in treatment inoculated with B. luridus. A wider range of sole carbon sources were utilized by the bacterial community in the rhizosphere of inoculated seedlings. The data gathered from this study provides important information for utilization of ECM fungi in forest restoration project in the Northwestern China. The present study will also significantly broaden our understanding of practical importance in the application of ECM fungal inoculum to promote soil microbial community diversity of soil.     

Short-term effects of organic municipal wastes on wheat yield,microbial biomass,microbial activity,and chemical properties of soil

The objectives of this work were to (a) investigate the short-term effects of applications of mineral fertilizer, municipal solid waste (MSW) compost, and two sewage sludges (SSs) subjected to different treatments (composting and thermal drying) on microbial biomass and activity of soil by measuring microbial biomass C, adenosine 5′-triphosphate content, basal respiration, and dehydrogenase, catalase, urease, phosphatase, β-glucosidase, and N-α-benzoyl-l-argininamide-hydrolyzing activities and (b) explore the relationships between soil microbiological, biochemical, and chemical properties and wheat yields under semiarid field conditions by principal component analysis. The additions of MSW compost, SS compost, and thermally dried SS did not affect significantly soil microbial biomass, as compared to mineral fertilization and no amendment. However, microbial activity increased in organically amended soils, probably due to the stimulating effect of the added decomposing organic matter. Changes in soil microbiological and biochemical properties showed no significant relationships with wheat yields, probably because plant growth was primarily water-limited, as typically occurs in semiarid regions.     

Interactions between arbuscular mycorrhizal fungi (Glomus intraradices,Glomeromycota) and amoebae (Acanthamoeba castellanii,Protozoa) in the rhizosphere of rice (Oryza sativa)

Rice plants (Oryza sativa L.) were grown in microcosms containing soil with a diverse bacterial community (control) and inoculated either with an axenic arbuscular mycorrhizal fungus (Glomus intraradices) or an axenic inoculum of protozoan grazers of bacteria (Acanthamoeba castellanii), or both, in a factorial design.Amoebae and mycorrhiza affected the root architecture of rice in opposite directions, with mycorrhiza reducing and protozoa increasing early root growth. Rice biomass did not increase in presence of mycorrhiza (×1.08), but strongly increased in presence of Acanthamoebae (×1.29). The positive effects of amoebae were always reduced when plants were also infected with mycorrhiza. Microbial biomass increased (×1.4) and microbial growth was less limited by phosphorus in presence of mycorrhiza. However, plant phosphorus uptake did not increase, rather, plant concentrations of carbon and nutrients decreased in presence of mycorrhiza, suggesting a sequestration of resources during the establishment of a mycorrhizal network. Amoebae strongly interacted with, and partly compensated for, the effects of mycorrhiza, demonstrating that interactions between AM fungi and the microbial food web in the rhizosphere significantly feed back on early plant performance.     

Interactions between mycorrhizal fungi and Collembola: effects on root structure of competing plant species

Mycorrhizal fungi influence plant nutrition and therefore likely modify competition between plants. By affecting mycorrhiza formation and nutrient availability of plants, Collembola may influence competitive interactions of plant roots. We investigated the effect of Collembola (Protaphorura fimata Gisin), a mycorrhizal fungus (Glomus intraradices Schenck and Smith), and their interaction on plant growth and root structure of two plant species, Lolium perenne L. (perennial ryegrass) and Trifolium repens L. (white clover). In a laboratory experiment, two individuals of each plant species were grown either in monoculture or in competition to the respective other plant species. Overall, L. perenne built up more biomass than T. repens. The clover competed poorly with grass, whereas the L. perenne grew less in presence of conspecifics. In particular, presence of conspecifics in the grass and presence of grass in clover reduced shoot and root biomass, root length, number of root tips, and root volume. Collembola reduced shoot biomass in L. perenne, enhanced root length and number of root tips, but reduced root diameter and volume. The effects of Collembola on T. repens were less pronounced, but Collembola enhanced root length and number of root tips. In contrast to our hypothesis, changes in plant biomass and root structure in the presence of Collembola were not associated with a reduction in mycorrhizal formation. Presumably, Collembola affected root structure via changes in the amount of nutrients available and their spatial distribution.     

Ecotoxicological effects of fluorine deposits on microbial biomass and enzyme activity in grassland

The influence of atmospheric fluoride deposits on the soil microbial biomass and its enzyme activities was investigated near the aluminium smelter at Ranshofen, Upper Austria. Soil samples at various distances from the emission source were analyzed for water-extractable F and microbial activity. The water-extractable F contents at the sites examined reflected the gradient of F exposure (10 to 189 mg F kg^?l dry soil). The microbial activities increased with distance from the emission source and were inversely correlated with the degree of F contamination. The linear correlation coefficients between the water-extractable F concentrations and the microbial biomass, dehydrogenase and arylsulphatase activity were r=?0·8, ?0·86 and ?0·84, respectively. In the most contaminated soil (up to 189 mg F kg^?1), the microbial activities were only 5–20% of those in the unpolluted soil. The microbial biomass and dehydrogenase activity decreased substantially where the concentration of F exceeded 100mgkg^?1, whereas arylsulphatase activity was already inhibited at 20 mg kg^?1. The accumulation of organic matter near the smelter (123 mg F kg^?1) also indicated severe inhibition of the microbial activity by F. Our investigations show that the ratio of arylsulphatase to microbial biomass can be used as a sensitive index for evaluating environmental stress such as F Contamination.     

Influence of Cognettia sphagnetorum (Enchytraeidae) on birch growth and microbial activity, composition and biomass in soil with or without wood ash

In this laboratory study using microcosms with seedlings of silver birch (Betula pendula), we explored whether Cognettia sphagnetorum (Enchytraeidae) can retain its important role of accelerating decomposition processes in soils and stimulating primary production under disturbance. We established systems with or without wood ash amendment (first-order disturbance) in the soil, either in the presence or absence of C. sphagnetorum. To test whether the systems treated with wood ash are more sensitive to an additional disturbance than the ash-free systems, the microcosms were later on disturbed by drought. To determine the influence of two disturbances on the enchytraeids and populations of other fauna, and the possible changes in the system functioning, measurements were made of the growth of birch seedlings, foliar N concentration, composition and biomass of soil microbial communities and leaching of N and dissolved organic carbon from the microcosms. Both wood ash application and drought exerted a clear negative influence on the populations of C. sphagnetorum. However, populations of this species were very resilient and recovered rapidly after drought in the ash-free soils. In the ash-free soils C. sphagnetorum tended to improve birch growth, increased the N content of the birch leaves, and decreased the root to shoot ratio. However, in the ash-treated soils enchytraeids had negative effects on these parameters. C. sphagnetorum impacted on neither N and C leaching nor soil microbes, whereas wood ash decreased microbial biomasses and changed their community structure (as determined by phospholipid fatty acids method and denaturing gel electrophoresis) and substrate utilisation potential (Biolog method). It was concluded that C. sphagnetorum can retain its influential role under varying environmental conditions, but that the stimulating or retarding effects of this species on system functioning can be context dependent.     

Effect of cattle faeces with different microbial biomass content on soil properties, gaseous emissions and plant growth

A study was carried out to investigate the effects of different diets for heifers, low- and high-yielding cows on the microbial composition of their faeces and subsequently the impacts of these faeces on CO₂ and N₂O emissions, N mineralisation and plant N uptake. A diet low in N and high in acid detergent fibre offered to heifers resulted in faeces dominated by fungi. These faeces were characterised by a low content in microbial biomass C and N and a high ergosterol concentration in comparison to the faeces of high-yielding cows. Added to soil, faeces of heifers led to lower emission and stronger N immobilisation during a 14-day incubation in comparison to the faeces of high-yielding cows. Total N₂O emission was significantly (P?<?0.05) correlated with faecal microbial biomass N. Rye grass yield and N uptake were lowest in the soil supplemented with faeces from heifers in a 62-day pot experiment. Plant N uptake was influenced by the faecal microbial biomass C/N ratio and the fungal C to bacterial C ratio. In conclusion, the faecal microbial biomass was affected to a high degree by the feeding regime and faecal microbial characteristics revealed higher impacts on plant N uptake than soil microbial properties.     

Fire severity shapes plant colonization effects on bacterial community structure,microbial biomass,and soil enzyme activity in secondary succession of a burned forest

The increasing frequency and severity of wildfires has led to growing attention to the effects of fire disturbance on soil microbial communities and biogeochemical cycling. While many studies have examined fire impacts on plant communities, and a growing body of research is detailing the effects of fire on soil microbial communities, little attention has been paid to the interaction between plant recolonization and shifts in soil properties and microbial community structure and function. In this study, we examined the effect of a common post-fire colonizer plant species, Corydalis aurea, on soil chemistry, microbial biomass, soil enzyme activity and bacterial community structure one year after a major forest wildfire in Colorado, USA, in severely burned and lightly burned soils. Consistent with past research, we find significant differences in soil edaphic and biotic properties between severe and light burn soils. Further, our work suggests an important interaction between fire severity and plant effects by demonstrating that the recolonization of soils by C. aurea plants only has a significant effect on soil bacterial communities and biogeochemistry in severely burned soils, resulting in increases in percent nitrogen, extractable organic carbon, microbial biomass, β-glucosidase enzyme activity and shifts in bacterial community diversity. This work propounds the important role of plant colonization in succession by demonstrating a clear connection between plant colonization and bacterial community structure as well as the cycling of carbon in a post-fire landscape. This study conveys how the strength of plant–microbe interactions in secondary succession may shift based on an abiotic context, where plant effects are accentuated in harsher abiotic conditions of severe burn soils, with implications for bacterial community structure and enzyme activity.     

2株溶磷、解钾与产IAA的内生真菌菌株的筛选、鉴定及促生作用研究

从钾矿区优势蕨类植物-芒萁内生真菌中筛选出具溶磷、解钾、分泌吲哚乙酸(IAA)的功能菌株,并研究其对农作物的促生作用。采用菌株的形态学特性、培养特征及5.8S rDNA、18S rDNA ITS序列分析方法对菌株进行鉴定,并结合液体培养和固体培养方法初步测定菌株的溶磷、解钾能力,采用回接及盆栽试验研究它们对玉米幼苗的促生作用。从42株芒萁内生真菌中筛选得到2株具有高效溶磷、解钾、分泌IAA功能的内生真菌菌株(编号为MQ013和MQ039),经鉴定MQ013菌株为泡盛曲霉(Aspergillus awamori),MQ039菌株为黑曲霉(Aspergillus niger)。促生作用试验结果显示,MQ013、MQ039菌株能有效提高玉米植株体内叶绿素及磷、钾含量。MQ013、MQ039菌株具有一定的溶磷、解钾和分泌IAA活性,并对玉米幼苗的生长有明显的促进作用,该菌株在研制高效生物肥料接种剂方面可能具有较大潜力。