Microbial community abundance and structure are determinants of soil organic matter mineralisation in the presence of labile carbon

Altered rates of native soil organic matter (SOM) mineralisation in the presence of labile C substrate (‘priming’), is increasingly recognised as central to the coupling of plant and soil-biological productivity and potentially as a key process mediating the C-balance of soils. However, the mechanisms and controls of SOM-priming are not well understood. In this study we manipulated microbial biomass size and composition (chloroform fumigation) and mineral nutrient availability to investigate controls of SOM-priming. Effects of applied substrate (¹³C-glucose) on mineralisation of native SOM were quantified by isotopic partitioning of soil respiration. In addition, the respective contributions of SOM-C and substrate-derived C to microbial biomass carbon (MBC) were quantified to account for pool-substitution effects (‘apparent priming’). Phospholipid fatty acid (PLFA) profiles of the soils were determined to establish treatment effects on microbial community structure, while the ¹³C-enrichment of PLFA biomarkers was used to establish pathways of substrate-derived C-flux through the microbial communities. The results indicated that glucose additions increased SOM-mineralisation in all treatments (positive priming). The magnitude of priming was reduced in fumigated soils, concurrent with reduced substrate-derived C-flux through putative SOM-mineralising organisms (fungi and actinomycetes). Nutrient additions reduced the magnitude of positive priming in non-fumigated soils, but did not affect the distribution of substrate-derived C in microbial communities. The results support the view that microbial community composition is a determinant of SOM-mineralisation, with evidence that utilisation of labile substrate by fungal and actinomycete (but not Gram-negative) populations promotes positive SOM-priming.     

Long-term exclusion of plant-inputs to soil reduces the functional capacity of microbial communities to mineralise recalcitrant root-derived carbon sources

Microbial communities in soil are highly species-rich, recognition of which has led to the view that functional redundancy within communities may buffer many impacts of altered community structure on soil functions. In this study we investigated the impact of long-term (>50 years) exclusion of plant-inputs (bare-fallow treatment) on soil microbial community structure and on the ability of the microbial biomass to mineralise tracer additions of ¹³C-labelled plant-derived C-substrates. Exclusion of plant-inputs resulted in depletion of soil organic matter (SOM) and a reduction in microbial biomass size. The microbial community structure was also strongly affected, as indicated by the distinct phospholipid fatty acid (PLFA) profiles in bare-fallow and grassland soils. Mineralisation of labile plant-derived substrates was not perturbed by the bare-fallow treatment. The incorporation of labile plant-derived C into PLFA biomarkers was found to differ between soils, reflecting the distinct community structures of the soils and indicating that these substrates were utilised by a broad range of microbial groups. In contrast, the mineralisation of recalcitrant plant-derived substrates was reduced in bare-fallow soil and the fate of substrate-derived C within PLFA biomarkers was, initially, similar between the soils. These results indicate that utilisation of these recalcitrant substrates was a function restricted to specific groups, and that exclusion of plant-derived inputs to soil had reduced the capacity of bare-fallow microbial communities to utilise this substrate type. Therefore, the study suggests that long-term selective pressure on microbial communities, resulting in altered community structure, may also result in altered functional attributes. This structure-function relationship was apparent for utilisation of recalcitrant plant-derived substrates, but not for the more widely distributed attribute of labile C-substrate utilisation.     

Microbial biogeography at the soil pore scale

Microbial communities exist and are active in a complex 3-D physical framework which can cause a variety of micro-environments to develop that are more or less suitable for microbial growth, activity and survival. If there is a significant microbial biogeography at the pore scale in soil, then the relationship between microbial diversity and ecosystem function is likely to be affected by micro-environmental variations at the pore scale. In this laboratory study we show that there is a significant pore-scale microbial biogeography by labelling microbial communities in different pore size classes of undisturbed soil cores with ¹³C-labelled fructose (a soluble, labile substrate). This was achieved by adding the substrate solution to the samples at different matric potentials (−100 kPa, −3.15 kPa and −1 kPa; placing the substrate in pores with maximum diameter of 0.97, 9.7 and 97 μm, respectively) and incubating the samples for two weeks. The mineralisation of soil organic carbon and fructose was measured as CO₂ and ¹³C-CO₂, respectively, in the jar headspace throughout the incubation. At the end of incubation we analysed the total microbial community structure using PLFA. The structure of microbial communities in different pore size classes was measured by PLFA stable isotope probing. Total PLFA profiles suggested that there was little effect of the incubation conditions on microbial community structure. However, labelled PLFA profiles showed that microbial community structure differed significantly among pore size classes, the differences being due primarily to variations in the abundance of mono-unsaturated lipids (Gram-biomarkers) and of the fungal biomarker (C18:2(9,12)). This is the first evidence for a significant microbial biogeography at the pore scale in undisturbed soil cores.     

Abundance, production and stabilization of microbial biomass under conventional and reduced tillage

Soil tillage practices affect the soil microbial community in various ways, with possible consequences for nitrogen (N) losses, plant growth and soil organic carbon (C) sequestration. As microbes affect soil organic matter (SOM) dynamics largely through their activity, their impact may not be deduced from biomass measurements alone. Moreover, residual microbial tissue is thought to facilitate SOM stabilization, and to provide a long term integrated measure of effects on the microorganisms. In this study, we therefore compared the effect of reduced (RT) and conventional tillage (CT) on the biomass, growth rate and residues of the major microbial decomposer groups fungi and bacteria. Soil samples were collected at two depths (0-5 cm and 5-20 cm) from plots in an Irish winter wheat field that were exposed to either conventional or shallow non-inversion tillage for 7 growing seasons. Total soil fungal and bacterial biomasses were estimated using epifluorescence microscopy. To separate between biomass of saprophytic fungi and arbuscular mycorrhizae, samples were analyzed for ergosterol and phospholipid fatty acid (PLFA) biomarkers. Growth rates of saprophytic fungi were determined by [¹⁴C]acetate-in-ergosterol incorporation, whereas bacterial growth rates were determined by the incorporation of ³H-leucine in bacterial proteins. Finally, soil contents of fungal and bacterial residues were estimated by quantifying microbial derived amino sugars. Reduced tillage increased the total biomass of both bacteria and fungi in the 0-5 cm soil layer to a similar extent. Both ergosterol and PLFA analyses indicated that RT increased biomass of saprophytic fungi in the 0-5 cm soil layer. In contrast, RT increased the biomass of arbuscular mycorrhizae as well as its contribution to the total fungal biomass across the whole plough layer. Growth rates of both saprotrophic fungi and bacteria on the other hand were not affected by soil tillage, possibly indicating a decreased turnover rate of soil microbial biomass under RT. Moreover, RT did not affect the proportion of microbial residues that were derived from fungi. In summary, our results suggest that RT can promote soil C storage without increasing the role of saprophytic fungi in SOM dynamics relative to that of bacteria.     

Soil organic matter in soil depth profiles: Distinct carbon preferences of microbial groups during carbon transformation

This study investigates how carbon sources of soil microbial communities vary with soil depth. Microbial phospholipid fatty acids (PLFA) were extracted from 0–20, 20–40 and 40–60 cm depth intervals from agricultural soils and analysed for their stable carbon isotopes (δ¹³C values). The soils had been subjected to a vegetation change from C3 (δ¹³C≈?29.3‰) to C4 plants (δ¹³C≈?12.5‰) 40 years previously, which allowed us to trace the carbon flow from plant-derived input (litter, roots, and root exudates) into microbial PLFA. While bulk soil organic matter (SOM) reflected ≈12% of the C4-derived carbon in top soil (0–20 cm) and 3% in deeper soil (40–60 cm), the PLFA had a much higher contribution of C4 carbon of about 64% in 0–20 cm and 34% in 40–60 cm. This implies a much faster turnover time of carbon in the microbial biomass compared to bulk SOM. The isotopic signature of bulk SOM and PLFA from C4 cultivated soil decreases with increasing soil depth (?23.7‰ to ?25.0‰ for bulk SOM and ?18.3‰ to ?23.3‰ for PLFA), which demonstrates decreasing influence of the isotopic signature of the new C4 vegetation with soil depth. In terms of soil microbial carbon sources this clearly shows a high percentage of C4 labelled and thus young plant carbon as microbial carbon source in topsoils. With increasing soil depth this percentage decreases and SOM is increasingly used as microbial carbon source. Among all PLFA that were associated to different microbial groups it could be observed that (a) depended on availability, Gram-negative and Gram-positive bacteria prefer plant-derived carbon as carbon source, however, (b) Gram-positive bacteria use more SOM-derived carbon sources while Gram-negative bacteria use more plant biomass. This tendency was observed in all three-depth intervals. However, our results also show that microorganisms maintain their preferred carbon sources independent on soil depth with an isotopic shift of 3–4‰ from 0–20 to 40–60 cm soil depth.     

Effects of modified Pb-, Zn-, and Cd- availability on the microbial communities and on the degradation of isoproturon in a heavy metal contaminated soil

The effects of modified heavy metal (HM) availability on the microbial community structure and on the microbe-mediated degradation of herbicide isoproturon (IPU) were evaluated in soil with a long-term HM contamination. The fate of ¹⁴C-ring labelled IPU was investigated for over 60 days under controlled microcosm conditions. Phosphate mineral apatite and a water solution of Pb, Zn, and Cd salts were previously homogeneously mixed into the soil material to reduce and to increase the proportion of bioavailable HM, respectively. The availability of Pb, Zn, and Cd was determined by HM fractionation and plant uptake 110 days after the addition of amendments, shortly before IPU addition. Apatite treatment reduced the availability of HM, but did not affect the microbial biomass and the microbial community structure on the genotype level (total soil DNA-RAPD). However, it changed the microbial community structure on the phenotype level, based on the composition of phospholipid fatty acids (PLFA) at the end of the degradation experiment. The degradation of IPU did not change. In contrast to apatite treatment, HM supplementation increased the bioavailability of Pb, Zn and Cd, which resulted in biomass reduction and changes of microbial community structure on the genotypic (total soil DNA-RAPD) and phenotypic (PLFA) level. Increased bioavailability of HM also significantly reduced the rate of IPU degradation and mineralisation. The total mineralisation over a period of 60 days decreased from 12 to 5% of initial ¹⁴C. Increased HM bioavailability did not influence the degradation pathways and kinetics of IPU.     

Experimental warming effects on the microbial community of a temperate mountain forest soil

Soil microbial communities mediate the decomposition of soil organic matter (SOM). The amount of carbon (C) that is respired leaves the soil as CO₂ (soil respiration) and causes one of the greatest fluxes in the global carbon cycle. How soil microbial communities will respond to global warming, however, is not well understood. To elucidate the effect of warming on the microbial community we analyzed soil from the soil warming experiment Achenkirch, Austria. Soil of a mature spruce forest was warmed by 4 °C during snow-free seasons since 2004. Repeated soil sampling from control and warmed plots took place from 2008 until 2010. We monitored microbial biomass C and nitrogen (N). Microbial community composition was assessed by phospholipid fatty acid analysis (PLFA) and by quantitative real time polymerase chain reaction (qPCR) of ribosomal RNA genes. Microbial metabolic activity was estimated by soil respiration to biomass ratios and RNA to DNA ratios. Soil warming did not affect microbial biomass, nor did warming affect the abundances of most microbial groups. Warming significantly enhanced microbial metabolic activity in terms of soil respiration per amount of microbial biomass C. Microbial stress biomarkers were elevated in warmed plots. In summary, the 4 °C increase in soil temperature during the snow-free season had no influence on microbial community composition and biomass but strongly increased microbial metabolic activity and hence reduced carbon use efficiency.     

Interactions between 14C-labelled atrazine and the soil microbial biomass in relation to herbicide degradation

A laboratory incubation experiment was set up to determine the effects of atrazine herbicide on the size and activity of the soil microbial biomass. This experiment was of a factorial design (0, 5, and 50 g g^–1 soil of non-labelled atrazine and 6.6×10³ Bq g^–1 soil of ¹⁴C-labelled atrazine) x (0, 20, and 100 g g^–1 soil of urea-N) x (pasture or arable soil with a previous history of atrazine application). Microbial biomass, measured by substrate-induced respiration and the fumigation-incubation method, basal respiration, incorporation of ¹⁴C into the microbial biomass, degradation of atrazine, and ¹⁴C remaining in soil were monitored over 81 days. The amount of microbial biomass was unaffected by atrazine although atrazine caused a significant enhancement of CO₂ release in the non-fumigated controls. Generally, the amounts of atrazine incorporated into the microbial biomass were negligible, indicating that microbial incorporation of C from atrazine is not an important mechanism of herbicide breakdown. Depending on the type of soil and the rate of atrazine application, 18–65% of atrazine was degraded by the end of the experiment. Although the pasture soil had twice the amount of microbial biomass as the arable soil, and the addition of urea approximately doubled the microbial biomass, this did not significantly enhance the degradation of atrazine. This suggests that degradation of atrazine is largely independent of the size of the microbial biomass and suggests that other factors (e.g., solubility, chemical hydrolysis) regulate atrazine breakdown. A separate experiment conducted to determine total amounts of ¹⁴C-labelled atrazine converted into CO₂ by pasture and arable soils showed that less than 25% of the added ¹⁴C-labelled atrazine was oxidised to ¹⁴CO₂ during a 15-week period. The rate of degradation was significantly greater in the arable soil at 24%, compared to 18% in the pasture soil. This indicates that soil microbes with previous exposure to atrazine can degrade the applied atrazine at a faster rate.     

Variable use of plant- and soil-derived carbon by microorganisms in agricultural soils

In this study we used compound specific ¹³C and ¹⁴C isotopic signatures to determine the degree to which recent plant material and older soil organic matter (SOM) served as carbon substrates for microorganisms in soils. We determined the degree to which plant-derived carbon was used as a substrate by comparison of the ¹³C content of microbial phospholipid fatty acids (PLFA) from soils of two sites that had undergone a vegetation change from C3 to C4 plants in the past 20-30 years. The importance of much older SOM as a substrate was determined by comparison of the radiocarbon content of PLFA from soils of two sites that had different ¹⁴C concentrations of SOM.The ¹³C shift in PLFA from the two sites that had experienced different vegetation history indicated that 40-90% of the PLFA carbon had been fixed since the vegetation change took place. Thus PLFA were more enriched in ¹³C from the new C4 vegetation than it was observed for bulk SOM indicating recent plant material as preferentially used substrate for soil microorganisms. The largest ¹³C shift of PLFA was observed in the soil that had high ¹⁴C concentrations of bulk SOM. These results reinforce that organic carbon in this soil for the most part cycles rapidly. The degree to which SOM is incorporated into microbial PLFA was determined by the difference in ¹⁴C concentration of PLFA derived from two soils one with high ¹⁴C concentrations of bulk SOM and one with low. These results showed that 0-40% of SOM carbon is used as substrate for soil microorganisms. Furthermore a different substrate usage was identified for different microorganisms. Gram-negative bacteria were found to prefer recent plant material as microbial carbon source while Gram-positive bacteria use substantial amounts of SOM carbon. This was indicated by ¹³C as well as ¹⁴C signatures of their PLFA. Our results find evidence to support ‘priming’ in that PLFA indicative of Gram-negative bacteria associated with roots contain both plant- and SOM-derived C. Most interestingly, we find PLFA indicative of archeobacteria (methanothrophs) that may indicate the use of other carbon sources than plant material and SOM to a substantial amount suggesting that inert or slow carbon pools are not essential to explain carbon dynamics in soil.     

Mid-term tracing of <Superscript>15</Superscript>N derived from urine and dung in soil microbial biomass

Large amounts of C and N are returned to pasture soils by grazing animals in the form of urine and dung. Therefore, a field trial was carried out to investigate the mid-term effects of ¹⁵N-labeled excrements, produced by feeding a cow with ¹⁵N-labeled grass silage, on the soil microbial biomass. Simulating the deposition of excrements, ¹⁵N-labeled urine and dung were applied to a 0.09-m2 area of a sandy pasture soil in October 2000 and 2001. Applied amounts of N were 1,030 and 1,052 kg ha⁻¹, respectively. Soil was sampled at 0–15 cm depth, three times over 7 months and analyzed for total C and N, and microbial biomass C and N. Recovery of urine and dung N in microbial biomass was determined by ¹⁵N analysis of K₂SO₄ extracts of pre-extracted fumigated and unfumigated soils. Under dung patches, microbial biomass C was 16% and 45% higher, and microbial biomass N was 24% and 57% higher than under the untreated soil in 2001 and 2002, respectively. Under urine patches, microbial biomass C was increased after 12 weeks and decreased after 27 weeks. Microbial biomass assimilated 7% to 17% and 10% to 21% of the ¹⁵N applied initially as urine and dung, respectively. These percentages were considerably higher than those for artificially with spiked ¹⁵N urea-created and labeled manures reported in previous experiments. An important reason may be that the naturally ¹⁵N-labeled N components behave differently in soil than urea spikes.     

Selective sterilisation of undisturbed soil cores by gamma irradiation: Effects on free-living nematodes,microbial community and nitrogen dynamics

The techniques available for sterilisation or defaunation of soil in ecological experiments mostly have strongly unwanted effects on soil structure and the dynamics of major nutrients such as nitrogen. The potential for using gamma irradiation to prepare defaunated soil microcosms was investigated by subjecting undisturbed soil cores to a range of irradiation doses (0, 5, 10, 20 and 40 kGy). The absence of living nematodes at the lowest irradiation dose was confirmed by microscopic observation. The effects of irradiation dose on mineral nitrogen (as NO₃⁻ and NH₄⁺), microbial biomass C (C_mic), and phospholipid fatty acid (PLFA) concentration and composition were determined over a 4 week incubation period. An increase in the concentration of NO₃⁻ occurred during the incubation period after exposure to 0, 5 and 10 kGy but was barely detectable at 20 and 40 kGy. The effect of irradiation dose on NH₄⁺ release was complex and highly variable within treatments, with the 10 kGy dose resulting in the highest concentrations. Microbial biomass carbon was significantly reduced following a 20 kGy irradiation dose and below detection at 40 kGy. Most remarkably, the sum of all measured PLFAs did not differ significantly between most treatments and was not correlated with microbial biomass. In most cases the concentration of signature fatty acids only differed significantly between the control and the highest irradiation dose treatments. To ascertain the sensitivity of microbial taxa to acute gamma irradiation with accuracy, measures of microbial community structure other than PLFA analysis are needed.     

Influence of organic and mineral amendments on microbial soil properties and processes

Microbial diversity in soils is considered important for maintaining sustainability of agricultural production systems. However, the links between microbial diversity and ecosystem processes are not well understood. This study was designed to gain better understanding of the effects of short-term management practices on the microbial community and how changes in the microbial community affect key soil processes. The effects of different forms of nitrogen (N) on soil biology and N dynamics was determined in two soils with organic and conventional management histories that varied in soil microbial properties but had the same fertility. The soils were amended with equal amounts of N (100 kg ha⁻¹) in organic (lupin, Lupinus angustifolius L.) and mineral form (urea), respectively. Over a 91-day period, microbial biomass C and N, dehydrogenase enzyme activity, community structure of pseudomondas (sensu stricto), actinomycetes and α proteobacteria (by denaturing gradient gel electrophoresis (DGGE) following PCR amplification of 16S rDNA fragments) and N mineralisation were measured. Lupin amendment resulted in a two- to five-fold increase in microbial biomass and enzyme activity, while these parameters did not differ significantly between the urea and control treatments. The PCR–DGGE analysis showed that the addition of mineral and organic compounds had an influence on the microbial community composition in the short term (up to 10 days) but the effects were not sustained over the 91-day incubation period. Microbial community structure was strongly influenced by the presence or lack of substrate, while the type of amendment (organic or mineral) had an effect on microbial biomass size and activity. These findings show that the addition of green manures improved soil biology by increasing microbial biomass and activity irrespective of management history, that no direct relationship existed among microbial structure, enzyme activity and N mineralisation, and that microbial community structure (by PCR–DGGE) was more strongly influenced by inherent soil and environmental factors than by short-term management practices.     

Biological degradation of pyrogenic organic matter in temperate forest soils

Pyrogenic organic matter (PyOM), derived from the incomplete combustion of plant biomass and fossil fuels, has been considered one of the most stable pools of soil organic matter (SOM) and a potentially important terrestrial sink for atmospheric CO₂. Recent evidence suggests that PyOM may degrade faster in soil than previously thought, and can affect native SOM turnover rates. We conducted a six-month laboratory incubation study to better understand the processes controlling the degradation of PyOM in soils using dual-enriched (¹³C/¹⁵N) PyOM and its precursor wood (Pinus ponderosa). We examined the effects of soil type and inorganic N addition on PyOM and wood C and N mineralization rates, microbial C utilization patterns, and native SOM turnover rates. PyOM charred at 450 °C or its precursor pine wood was incubated in two temperate forest subsoils with contrasting short range order (SRO) clay mineralogy (granite versus andesite parent material). Duplicates of experimental treatments with and without PyOM added were sterilized and abiotic C mineralization was quantified. In a second incubation, PyOM or wood was incubated in granitic soil with and without added NH₄NO₃ (20 kg N ha⁻¹). The fate of ¹³C/¹⁵N-enriched PyOM and wood was followed as soil-respired ¹³CO₂ and total extractable inorganic ¹⁵N. The uptake of ¹³C from PyOM and wood by soil microbial community groups was quantified using ¹³C-phospholipids fatty acids (PLFA). We found that (1) The mean residence time (MRT) of PyOM-C was on a centennial time scale (390–600 yr) in both soil types; (2) PyOM-C mineralization was mainly biologically mediated; (3) Fungi more actively utilized wood-C than PyOM-C, which was utilized by all bacteria groups, especially gram (+) bacteria in the andesite (AN) soil; (4) PyOM-N mineralization was 2 times greater in granite (GR) than in AN soils; (5) PyOM additions did not affect native soil C or N mineralization rates, microbial biomass, or PLFA-defined microbial community composition in either soil; (6) The addition of N to GR soil had no effect on the MRT of C from PyOM, wood, or native SOM. The centennial scale MRT for PyOM-C was 32 times slower than that for the precursor pine wood-C or native soil C, which is faster than the MRT used in ecosystem models. Our results show that PyOM-C is readily utilized by all heterotrophic microbial groups, and PyOM-C and -N may be more dynamic in soils than previously thought.     

Responses of soil organic matter and microorganisms to freeze-thaw cycles

Soil organic matter (SOM) biomarker methods were utilized in this study to investigate the responses of fungi and bacteria to freeze-thaw cycles (FTCs) and to examine freeze-thaw-induced changes in SOM composition and substrate availability. Unamended, grass-amended, and lignin-amended soil samples were subject to 10 laboratory FTCs. Three SOM fractions (free lipids, bound lipids, and lignin-derived phenols) with distinct composition, stability and source were examined with chemolysis and biomarker Gas Chromatography/Mass Spectrometry methods and the soil microbial community composition was monitored by phospholipid fatty acid (PLFA) analysis. Soil microbial respiration was also measured before and during freezing and thawing, which was not closely related to microbial biomass in the soil but more strongly controlled by substrate availability and quality. Enhanced microbial mineralization (CO₂ flush), considered to be derived from the freeze-thaw-induced release of easily decomposable organic matter from microbial cell lyses, was detected but quickly diminished with successive FTCs. The biomarker distribution demonstrated that free lipids underwent a considerable size of decrease after repeated FTCs, while bound lipids and lignin compounds remained stable. This observation indicates that labile SOM may be most influenced by increased FTCs and that free lipids may contribute indirectly to the freeze-thaw-induced CO₂ flush from the soil. PLFA analysis revealed that fungal biomass was greatly reduced while bacteria were unaffected through the lab-simulated FTCs. Microbial community shifts may be caused by freezing stress and competition for freeze-thaw-induced substrate release. This novel finding may have an impact on carbon and nutrient turnover with predicted increases in FTCs in certain areas, because fungi and bacteria have different degradation patterns of SOM and the fungi-dominated soil community is considered to have a higher carbon storage capacity than a bacteria-dominated community.     

Discrete functional pools of soil organic matter in a UK grassland soil are differentially affected by temperature and priming

We show that both temperature and priming act differently on distinct C pools in a temperate grassland soil. We used SOM which was ¹⁴C-labelled in four different ways: by labelling soil with ¹⁴C-glucose, by adding leaf litter from plants pre-labelled with ¹⁴CO₂, and by labelling in situ with ¹⁴CO₂ applied to the ryegrass canopy either 6 or 18 months earlier. Samples of each type of ¹⁴C labelled soil were incubated at either 4, 10, 15, or 20 °C and the exponential loss of ¹⁴CO₂ used to characterise treatment effects. ¹⁴C allocation to microbial fractions was greater, and so overall mineralization by microbes was greater, as temperature rose, but turnover of the microbial labile pool was temperature-insensitive, and the turnover of microbial structural material was reduced as temperature rose. The ability of the microbial population to degrade just one fraction of plant litter was increased greatly by temperature. A pool of SOM with a half-life of about 70 d was degraded faster at higher temperatures. Less tractable but abundant pools of SOM were not accessed more readily at higher temperatures by the microbial population. Priming with glucose or amino-acids only speeded the mineralization of recent SOM (probably from the living microbial biomass), and was not altered by temperature. These results have implications for the impacts of climate change on soil C cycling.     

Impact of carbon nanomaterials on microbial activity in soil

In this study, effects of an increase in concentration of fullerene-C_60, single-walled carbon nanotubes (SWCNTs), multi-walled carbon nanotubes (MWCNTs) or fullerene soot (FS) on overall microbial activity was investigated over a 21 d incubation period. Microbial utilisation of ¹⁴C-glucose and uptake of ¹⁴C-glucose into the microbial biomass was investigated. For CNM-amended soils, greater extents of ¹⁴C-glucose mineralisation were found in the C₆₀-amended soils compared to MWCNT-, SWCNT- or FS-amended soils. In addition, the 100 and 1000 mg kg⁻¹ were consistently found to have higher extents of mineralisation in C₆₀, MWCNT, SWCNT or FS-amended soils, respectively. Further, the incorporation of ¹⁴C-glucose into the microbial biomass declined slightly with an increase in concentration in the amended soils, but no consistent pattern was observed. As a result, the biophysical quotient (BQ) increased significantly (P < 0.05), as concentrations increased from 1 mg kg⁻¹ to 1000 mg kg⁻¹ in all C₆₀-, MWCNT-, SWCNT- and FS-amended soils. The results obtained from this study showed that the addition to carbon nanomaterials had no profound impacts on the overall microbial activity, and the overall influence of CNMs on soil microbial activity does not reveal a specific pattern in the short term.     

Differences in soil enzyme activities,microbial community structure and short-term nitrogen mineralisation resulting from farm management history and organic matter amendments

Changes in soil microbial biomass, enzyme activities, microbial community structure and nitrogen (N) dynamics resulting from organic matter amendments were determined in soils with different management histories to gain better understanding of the effects of long- and short-term management practices on soil microbial properties and key soil processes. Two soils that had been under either long-term organic or conventional management and that varied in microbial biomass and enzyme activity levels but had similar fertility levels were amended with organic material (dried lupin residue, Lupinus angustifolius L.) at amounts equivalent to 0, 4 and 8 t dry matter lupin ha^?1. Microbial biomass C and N, arginine deaminase activity, fluorescein diacetate hydrolysis, dehydrogenase enzyme activity and gross N mineralisation were measured in intervals over an 81-day period. The community structure of eubacteria and actinomycetes was examined using PCR–DGGE of 16S rDNA fragments. Results suggested that no direct relationships existed between microbial community structure, enzyme activities and N mineralisation. Microbial biomass and activity changed as a result of lupin amendment whereas the microbial community structure was more strongly influenced by farm management history. The addition of 4 t ha^?1 of lupin was sufficient to stimulate the microbial community in both soils, resulting in microbial biomass growth and increased enzyme activities and N mineralisation regardless of past management. Amendment with 8 t lupin ha^?1 did not result in an increase proportional to the extra amount added; levels of soil microbial properties were only 1.1–1.7 times higher than in the 4 t ha^?1 treatment. Microbial community structure differed significantly between the two soils, while no changes were detected in response to lupin amendment at either level during the short-term incubation. Correlation analyses for each treatment separately, however, revealed differences that were inconsistent with results obtained for soil biological properties suggesting that differences might exist in the structure or physiological properties of a microbial component that was not assessed in this study.     

Natural abundance radiocarbon in soil microbial biomass: Results from a glacial foreland

We present a method for determining the natural abundance radiocarbon (¹⁴C) content of soil microbial biomass (SMB) based on existing fumigation-extraction procedures. We applied the technique to soils from the foreland of the Ödenwinkelkees glacier in the Austrian Alps, which has a well-characterised chronosequence of soils at different stages of development. Across the chronosequence, SMB contained post-bomb levels of ¹⁴C, suggesting it was substantially composed of carbon that had been fixed since the 1960s. Comparison of our results with previous findings from the same site showed that at most stages in the sequence the SMB had a similar ¹⁴C content to the bulk soil organic matter (SOM). However, soil respired CO₂ was ¹⁴C-depleted relative to SMB, indicating that at least a component of the microbial community was mineralising some older carbon. In the most recently exposed soils, SMB was ¹⁴C-enriched compared to both soil respiration and SOM, suggesting that a small component of the microbial biomass that utilises older carbon contributes disproportionately more to the CO₂ efflux. Although other interpretations are possible, this explanation is consistent with the notion that early on in the succession a large proportion of the microbial biomass is dormant.     

Temperature response of soil organic matter mineralisation in arctic soil profiles

Soil organic matter (SOM) in arctic and boreal soils is the largest terrestrial reservoir of carbon. Increased SOM mineralisation under increased temperature has the potential to induce a massive release of CO₂. Precise parameterisation of the response of arctic soils to increased temperatures is therefore crucial for correctly simulating our future climate. Here, we investigated the temperature response of SOM mineralisation in eight arctic soil profiles of Norway, Svalbard and Russia. Samples were collected at two depths from both mineral and organic soils, which were affected or not by permafrost and were incubated for 91 days at 4, 8, 12, and 16 °C. Temperature response was investigated through two parameters derived from a simple exponential model: the intensity of mineralisation, α, and the temperature sensitivity, Q10. For each sample, SOM quality was investigated by ¹³C-NMR, whereas bacterial and fungal community structure was characterised by T-RFLP and ARISA fingerprints, respectively. When estimated from the whole incubation period, α proved to be higher in deep permafrost samples than in shallow active layer ones due to the presence transient flushes of mineralisation in deep permafrost affected soils. At the end of the incubation period, after mineralization flushes had passed, neither α nor Q10 (averaging 1.28 ± 0.07) seemed to be affected by soil type (organic vs mineral soil), site, depth or permafrost. SOM composition and microbial community structure on the contrary where affected by site and soil type. Our results suggest that deep samples of permafrost affected soil contain a small pool of fast cycling carbon, which is quickly depleted after thawing. Once the mineralization flush had passed, the temperature response of permafrost affected soil proved to be relatively homogenous among sample types, suggesting that the use of a single temperature sensitivity parameter in land surface models for SOM decomposition in permafrost-affected soils is justified.     

Carbon and net nitrogen mineralisation in two forest soils amended with different concentrations of biuret

Biuret is a known contaminant of urea fertilisers that might be useful as a slow release N fertiliser for forestry. We studied carbon (C), net nitrogen (N) mineralisation and soil microbial biomass C and N dynamics in two forest soils (a sandy loam and a silt loam) during a 16-week long incubation following application of biuret (C 23.3%, N 40.8%, O 30.0% and H 4.9%) at concentrations of 0, 2, 10, 100 and 1000 mg kg⁻¹ (oven-dried) soil to assess the potential of biuret as a slow-release N fertiliser. Lower concentrations of biuret specifically increased C mineralisation and soil microbial biomass C in the sandy loam soil, but not in the silt loam soil. A significant decrease of microbial biomass C was found in both soils at week 16 after biuret was applied at higher concentrations. C mineralisation declined with duration of incubation in both soils due to decreased C availability. Biuret at concentrations from 10 to 100 mg kg⁻¹ soil had a significantly positive priming effect on soil organic N mineralisation in both soils. The causes for the priming effects were related to the stimulation of microbial growth and activity at an early stage of the incubation and/or the death of microbes at a later stage, which was biuret-concentration-dependent. The patterns in NH₄⁺-N accumulation differed markedly between the two soils. Net N mineralisation and nitrification were much greater in the sandy loam soil than in the silt loam soil. However, the onset of net nitrification was earlier in the silt loam soil. Biuret might be a potential slow-release N source in the silt loam soil.