Allium white rot and its control

Abstract. White rot ( Sclerotium cepivorum ) causes serious losses in Allium crops throughout the world. The pathogen produces sclerotia which survive for long periods and are the main source of inoculum. Sclerotial germination is stimulated by the host and new sclerotia are produced on the host near the soil surface. Allium crops are cultivated in various systems and environments and no one method of control is effective. There is increasing interest in control strategies based on combinations of treatments which decrease the populations of sclerotia in the soil, thereby improving the effectiveness of present methods of control. Materials and methods being tested for inclusion in programmes of integrated control include germination stimulants, soil fumigants, solar heating, roguing, aerobic composting, microbial control and combined chemical/microbial control with fungicide-resistant micro-organisms.     

Co-remediation of DDT-contaminated soil using white rot fungi and laccase extract from white rot fungi

Purpose

2,2-Bis(p-chlorophenyl)-1,1,1-trichloroethane (DDT), one of the most widely used organochlorine pesticides in soil, was banned in the 1970s for agricultural use because of its detrimental impacts on wildlife and harmful effects on human health via the food chain. However, high levels of DDT are frequently detected in agricultural soils in China. Considering this situation, this study investigated the use of white rot fungi and laccase derived from white rot fungi to co-remediate DDT-contaminated soil.

Materials and methods

A culture of white rot fungi was used to inoculate soil samples and also to extract laccase from. Soil was contaminated with four components of DDT (p,p′-DDE, o,p′-DDT, p,p′-DDD, and p,p′-DDT). Individual DDT components and the sum of the DDT components (p,p′-DDE, o,p′-DDT, p,p′-DDD, and p,p′-DDT—collectively referred to as DDTs) were both analyzed by GC at various stages during the incubation period. The efficacy of co-remediating DDT-contaminated soil using white rot fungi and laccase was tested by investigating how degradation varied with varying amounts of white rot fungi, sterilizing soil, temperature, soil pH, concentrations of DDT, and concentration of the heavy metal ion Cd²⁺.

Results and discussion

“”It was concluded that the reduction of DDTs in soil using white rot fungi and laccase was higher than reduction using only white rot fungi or laccase by nearly 14 and 16 %, respectively. Five milliliters fungi per 15 g soil and 6 U laccase per gram soil were the optimal application rates for remediation, as shown by a reduction in DDTs of 66.82 %. The difference in the reduction of individual DDT components and DDTs between natural and sterilized soils was insignificant. The optimal temperature and pH in the study were 28 °C and 4.5, respectively. In addition, reduction of individual DDT components and DDTs increased with increasing concentrations of DDT and decreased with increasing concentrations of Cd²⁺.

Conclusions

Compared with the remediation of DDT using only white rot fungi or laccase, the co-remediation of DDT using white rot fungi and laccase degraded DDT in soil more rapidly and efficiently; the highest reduction of DDTs was 66.82 %.     

Biological control of Rhizoctonia sp. root rot of Casuarina equisetifolia seedlings by Frankia spp. strains

Seventy Frankia spp. strains (nodulating N₂-fixing actinomycetes) were isolated from root nodules of Casuarina equisetifolia from different localities of Tamil Nadu state, India. From these, four strains (UMCe12, UMCe23, UMCe35, and UMce55) were selected. Their potential use as biological control agents for Rhizoctonia solani root rot disease of C. equisetifolia seedlings and their relative efficiency in nodule production were investigated. Between the two inoculum broadcast systems tested, seed-coating with Frankia spp. cell suspension was superior to the soil application of cells as sand-vermiculite-basal ammonium propionate inoculum. UMCe12 was the promising strain, offering the highest level of disease protection (81.1%) and nodule production (88.1%) in the R. solani-infested soil, followed by UMCe23 (60.3 and 65.5% of disease protection and nodule production, respectively), UMCe55 (53.5 and 58.2%), and UMCe35 (45.4 and 44.5%). Further, a significant positive correlation was observed between the dose of Frankia spp. and efficiency in both disease control and nodule production.     

Degradation of isoproturon by the white rot fungus Phanerochaete chrysosporium

The ability of the white rot fungus Phanerochaete chrysosporium to degrade isoproturon was tested in solid substrate fermentation (SSF) cultures using straw as substrate/carrier material. The role of the lignin degrading enzymes, lignin peroxidase (LiP) and manganese peroxidase (MnP), in the degradation of the herbicide was also studied. Isoproturon concentration and LiP and MnP activities were followed in sterile straw cultures of the fungus. In vitro degradation tests with pure LiP and MnP were performed. P. chrysosporium in straw cultures was able to degrade 91% of the herbicide isoproturon in 14 days of incubation. A sharp decrease of isoproturon coincided with the largest MnP activity. Although LiP activity was also present, its role in SSF is unclear. The in vitro tests showed a strong isoproturon oxidation by LiP and a slower oxidation by MnP in the presence of Tween 80 probably by a lipid peroxidation process. Two N-demethylated metabolites were identified in pure enzyme tests and in SSF cultures. Several unidentified isoproturon derivatives, most likely hydroxylated, were also formed in both systems. The different pattern of derivatives detected in pure LiP and MnP tests showed a completely different metabolism by these two enzymes.     

采用白腐菌对难降解有机污染物的生物净化

白腐菌对难降解污染物的生物降解作用已引起世界范围内的普遍关注，它可通过其分泌的特殊的降解酶系或其他机制将各种难降解的有机污染物彻底降解为CO₂和H₂O。该文介绍了白腐真菌的生物学特性及其分泌的酶系，阐述了白腐菌所分泌的酶在降解各种难降解有机物中的作用机制，分析了提高白腐菌降解能力的方法，总结了白腐菌在治理环境污染方面的应用现状与研究进展，探讨了白腐菌在实际应用方面的不足以及今后的研究方向，对白腐菌在解决环境污染方面的问题具有实际意义。     

Biological control of the charcoal root rot fungus Macrophomina phaseolina on slash pine seedlings by a hyperparasite

Macrophomina phaseolina. the cause of damping-off and charcoal root rot disease on slash pine seedlings (Pinus elliottii Engelm var. elliottii), was antagonized by an unidentified basidiomycete species under laboratory and nursery conditions. Aseptically-grown slash pine seedlings died 3 days after inoculation with M. phaseolina, whereas seedlings inoculated with the basidiomycete sp., or basidiomycete sp. plus M. phaseolina, and uninoculated controls were alive after 6 months. In nursery studies, survival of slash pine seedlings in plots inoculated with M. phaseolina was significantly lower (57 per cent) than survival resulting from inoculations with the basidiomycete sp. (90 per cent), or basidiomycete sp. plus M. phaseolina (84 per cent), and the uninoculated controls (81 per cent). Electron microscopy showed that the basidiomycete sp. is a hyperparasite on mycelia of M. phaseolina. Preliminary evidence indicates that the hyperparasite is not host-specific but will infect other fungal pathogens. Two ectomycorrhizal fungi were not parasitized by the basidiomycete.     

罗伦隐球酵母对草梅采后灰霉病害的生物防治

测定了罗伦隐球酵母对草莓采后由灰葡萄孢霉引起的灰霉腐烂的抑制效果。在马铃薯葡萄糖琼脂固体培养基（PDA）体外抑菌实验中，把生长有罗伦隐球酵母的营养酵母葡萄糖固体培养基(NYDA)切块放置在涂布有灰霉孢子的马铃薯葡萄糖琼脂固体培养基上一起培养，罗伦隐球酵母并不能抑制霉菌的生长；而在马铃薯葡萄糖液体培养基(PDB)体外抑菌实验中，罗伦隐球酵母活细胞有效地抑制了灰霉孢子的萌发。酵母细胞菌悬液对灰霉的抑菌效果好于酵母培养液，而酵母热杀死液和滤液没有抑菌作用。酵母菌悬液的细胞浓度对其抑菌作用有显著的影响：无论草莓在20℃条件下贮藏3 d或是在2℃条件下贮藏20 d，应用在草莓上的酵母细胞浓度越高，则草莓的霉变率越低。罗伦隐球酵母菌悬液对草莓整果储藏自然条件下霉变的抑制试验也有类似的结果。因此，罗伦隐球酵母可以代替化学杀菌剂作为草莓采后的霉菌抑制剂。     

Initial white rot type dominance of wood decomposition and its functional consequences in a regenerating tropical dry forest

Efforts to model woody debris dynamics are limited by our empirical understanding of the patterns and drivers of decomposition. This knowledge gap is significant in tropical forests, particularly in the dry tropics where research has been minimal and where forest regeneration is a management priority. Here, we coupled trait-function relationships in decomposing logs with indices of microbial and insect activity in a regenerating Costa Rican dry forest. We cut and placed logs (∼18 cm dia) of eight tree species in ground contact at two sites. We assessed density loss and element dynamics in sapwood and heartwood twice annually over two years. At time 0 and year 2, we measured lignin, nitrogen, structural carbohydrates, extractives, insect galleries, and two residue ‘signatures’ of fungal rot type: dilute alkali solubility (DAS; higher for brown rot) and lignin:glucan loss (higher for white rot). After two years, sapwood mean density losses ranged from 11.6 to 44.4% among tree species (excluding one thoroughly-degraded species). The best predictor of sapwood density loss was initial pH, but this correlation was negative, contrasting positive correlations proposed for temperate forests. Mean heartwood density losses were consistently less than those in sapwood, and although heartwood extractives contents were as high as 16.4%, trait correlations were insignificant. Insect galleries contributed little to density loss (<3%), and DAS and lignin loss patterns indicated dominance by white rot fungi. This was often matched by dense fungal zone line patterns (spalting), outlining many small territories. Perhaps as a consequence, element patterns were spatially variable, with overall trends roughly similar to those from temperate studies (e.g., Ca gain, P, K loss). Estimated CO₂ fluxes from logs ranged from ∼25 to 75% percent of annual fluxes from litter fall. This collectively implies an important role for wood decomposition in dry forest carbon cycling, and in our case, it shows an interesting pattern suggesting high decomposer spatial complexity but low functional diversity.     

Biological activity of total lipids from red and white wine/must.

Wine is an essential component of the Mediterranean diet, and it is thought to exert a protective effect against coronary heart disease. Although many efforts have been made to determine the protective compounds in wines, their exact nature and how they are involved in the protection mechanisms are still unclear. In this study, total lipids, total polar lipids, and total neutral lipids of five wines and three musts were tested in vitro for their ability to induce washed rabbit platelet aggregation and/or to inhibit platelet activating factor (PAF) induced aggregation. The results showed that the biological activity of wine/must total lipids can be attributed mainly to total polar lipids. In the red wine Cabernet Sauvignon, we fractionated total neutral lipids, total polar lipids, and pigments by HPLC. Each fraction was tested in vitro for its biological activity. Structural data of the most active fractions, based on biological, chemical, and spectral methods, are also presented.     

Antifungal proteins and other mechanisms in the control of sorghum stalk rot and grain mold

Research on antifungal proteins and other mechanisms that provide the biochemical basis for host-plant resistance to stalk rot and grain molds is reviewed in this paper. Stalk rot caused by Fusarium species leads to substantial yield loss due to poor grain filling and/or lodging. A transgenic sorghum expressing high levels of chitinase exhibited less stalk rot development when exposed to conidia of F. thapsinum. Grain mold of sorghum is associated with warm humid environments and results from colonization by several fungi (F. thapsinum, Curvularia lunata, and Alternaria alternata) of the developing caryopsis. The roles of several biochemical mechanisms (tannins, phenolic compounds, red pericarp, proteins, hard endosperm, and antifungal proteins) on grain mold resistance are discussed. Resistance mechanisms related to these compounds appear to be additive, and pyramiding of genes is a feasible approach to limit grain deterioration. Several experimental approaches are proposed to extend current findings.     

Earthworm extraction with onion solution

Earthworm populations can be assessed using various extraction solutions of which the most widely used is formaldehyde (0.5%). Although formaldehyde extraction has been proposed as a standard method by ISO, its use has been questioned due to its toxic and carcinogenic properties, and the associated risks to human health and the environment. Alternative, safer methods are needed, so the present study was undertaken to evaluate the efficiency of a low cost and non-toxic onion (Allium cepa L.) extract solution in collecting earthworms in two soil types in Southern Brazil. The study was divided in three parts. In the first, we examined the efficiency of solutions with 60, 80, 100, 170 and 200 g onion extract L⁻¹ H₂O in extracting earthworms from a sandy Ultisol underlying a citrus orchard. The second experiment evaluated the effectiveness of solutions of 25, 75, 125 and 175 g onion extract L⁻¹ H₂O compared with the standard formaldehyde solution (0.5%) in extracting earthworms from a clayey Oxisol cultivated with corn. The third experiment compared the onion extract solution at concentration of 175 g L⁻¹ with formaldehyde (0.5%) in extracting earthworms from the sandy Ultisol. Increasing concentrations of onion extract solution led to higher extraction of earthworms in both soil types, but the highest numbers were obtained with 175 g L⁻¹ H₂O, a concentration that had similar efficiency to the standard solution of formaldehyde (0.5%). The onion extract solution is a low cost and non-toxic alternative to the use formaldehyde in extracting worms from soils, although further research is warranted to assess its use in other soils, climates and vegetation conditions.     

Aphanomyces pea root rot disease and control with special reference to impact of Brassicaceae cover crops

Abstract

Pea root rot disease caused by the pathogen Aphanomyces euteiches deserves increased attention, since peas are an important cash crop and also improve the N balance in temperate agriculture. However, due to pea root rot it is difficult to cultivate peas as frequently and successfully as desired. In the search for biological measures to overcome this problem, attention has been drawn to the use of Brassicaceae plants as cover crops between main crops, since these can be effective catch crops for nutrients and also exert allelopathic effects. Many species within the Brassicaceae contain glucosinolates (GSLs). Their hydrolysis products, the volatile isothiocyanates (ITCs), have been shown to suppress soil-borne plant pathogens such as A. euteiches. In addition, Brassicaceae biomass releases water-soluble toxic substances such as oxazolidine-2-thione and supplies nutrients and organic matter. Overall, this influences the soil microbial community and the final suppression of pathogens. Due to the unpredictability of the control effect of Brassicaceae biomass incorporation into soil on the pathogen, there is a need to define the mechanisms behind suppression in the field situation. This review focuses on how incorporation of Brassicaceae biomass suppresses A. euteiches under field conditions and the effect on the emerging pea. Different factors influencing the severity of field pea (Pisum sativum L.) root rot disease are also discussed. One conclusion is that suppression of pea root rot depends on the quality and quantity of incorporated Brassicaceae biomass.     

Phytochemical composition of onion during long-term storage

Onion cultivar “Sunpower” has growing popularity in Korea due to high storability. The present study considers changes in flavonols, sugars, and two amino acids in onion bulbs during a long-term storage in the ambient dark storage room and in glasshouse equipped with a climate control system. Flavonol and sugar contents were found to fluctuate noticeably during the storage period. Amino acid content remained relatively unchanged till the onset of inner sprouting, increasing afterward. Visible sprouts appeared at week 22 in the dark storage room and for four weeks later in the glasshouse. The bulbs lost 20–30% of their weight depending on storage conditions at the end of the storage trials. At the same time, the content of nutraceutics in study expressed on the dry weight basis remained of the same order of magnitude. The nature of observed variations in chemical composition of onions as well as relation of this phenomenon to physiological development of stored onion bulbs is discussed. A conclusion is made that the “Sunpower” onion cannot sustain overwinter storage.     

Failure of entomopathogens to control white grubs (Coleoptera: Scarabaeidae)

White grubs are the root-feeding larvae of scarab beetles (Coleoptera: Scarabaeidae), and they are among the most destructive pests of turfgrass, pastures and horticultural plants in many parts of the world. A two-year field experiment was conducted to control different white grub species in an organically utilised meadow with dry forage conservation. The efficacy of Beauveria brongniartii, Beauveria bassiana, Bacillus thuringiensis var. kurstaki, B. thuringiensis var. tenebrionis and Heterorhabditis bacteriophora was tested against the white grubs in comparison with untreated control (only water suspension was used). The application of biological control agents was conducted twice (April and August). Our observations show that several biological control agents are capable of controlling the populations of the first and second instar larvae of different scarab grub species. The efficacy of most biological control agents, however, declines when larvae reach the third instar stage. The most promising combination tested in our study is that of entomopathogenic fungi and H. bacteriophora for controlling the first- and second-stage instar larvae. In addition, the summer application proved to be more suitable for control of the first-stage instar larvae than the spring application.     

Bacteria able to control foot and root rot and to promote growth of cucumber in salinated soils

The aim of the present work was to test known bacterial plant growth-promoting strains for their ability to promote cucumber plant growth in salinated soil and to improve cucumber fruit yield by protecting these plants against soil-borne pathogens. Fifty-two plant-beneficial bacterial strains were evaluated for their ability to protect plants against cucumber foot and root rot after bacterization of the seeds and infestation of salinated soil with the isolated Fusarium solani pathogen. Based on the results of initial screenings, five efficient strains were selected, namely Serratia plymuthica RR-2-5-10, Stenotrophomonas rhizophila e-p10, Pseudomonas fluorescens SPB2145, Pseudomonas extremorientalis TSAU20, and P. fluorescens PCL1751. All five strains are salt tolerant since they grow well in a medium to which 3% NaCl was added. Infestation of the soil with F. solani resulted in an increase of the percentage of diseased plants from 17 to 54. Priming of seedlings with the five selected bacterial strains reduced this proportion to as low as 10%. In addition, in the absence of an added pathogen, all five strains showed a significant stimulatory effect on cucumber plant growth, increasing the dry weight of whole cucumber plants up to 62% in comparison to the non-bacterized control. The strains also increased cucumber fruit yield in greenhouse varying from 9% to 32%. We conclude that seed priming with the selected microbes is a very promising approach for improving horticulture in salinated soils. Moreover, allochthonous strains isolated from non-salinated soil, from a moderate or even cold climate, and from other plants than cucumber, functioned as well as autochthonous strains as cucumber-beneficial bacteria in salinated Uzbek soils. These results show that these plant-beneficial strains are robust and they strongly suggest they can also be used successfully in case the climate gets warmer and the soils will become more salinated. Finally, the mechanisms by which they may exert their plant-beneficial action are discussed.     

Biological control of the root-knot nematode Meloidogyne javanica by Trichoderma harzianum

The filamentous fungi Trichoderma spp. is currently developed as biocontrol agents against many plant pathogens. Recent studies have shown that these fungi are able to infect nematode eggs and juveniles. In this research, biological control of root-knot nematode (Meloidogyne javanica) by Trichoderma harzianum BI was investigated in greenhouse and laboratory experiments. Results showed that different concentrations (10²–10⁸ spores/ml) of T. harzianum BI decreased nematode infection and other parameters significantly, compared to control. T. harzianum BI was able to penetrate nematode egg mass matrix and significantly decreased nematode egg hatching level. Specific activities of resistance-related enzymes, namely peroxidase (POX), polyphenol oxidase (PPO) and phenylalanine ammonia lyase (PAL) increased significantly in T. harzianum BI inoculated plants. Maximum activities of POX, PPO and PAL were observed at the 5, 5 and 6 days after inoculation, respectively. Chitinase activity was also increased in culture filtrates of T. harzianum BI grown on wheat bran moistened with salt solution supplemented with colloidal chitin or nematode eggs. Maximum activity of chitinase was recorded at the 4 days after inoculation, in media supplemented with colloidal chitin (1.15 U/min per ml) and nematode eggs (0.85 U/min per ml). Results suggested that direct parasitism of eggs through the increase in extracellular chitinase activity, which would be indicator of eggs infection capability, and inducing plant defense mechanisms leading to systemic resistance are two main suppression mechanisms used by T. harzianum BI against nematode.     

Antioxidative compounds from the outer scales of onion

Antioxidative compounds were isolated from the methanol extract of dry outer scales of onion (Allium cepa L.). Nine phenolic compounds (1-9) were finally obtained by reversed-phase high-performance liquid chromatography, and their structures were elucidated by NMR and mass spectrometry analyses. They were the six known compounds, protocatechuic acid (1), 2-(3,4-dihydroxybenzoyl)-2,4,6-trihydroxy-3(2H)-benzofuranone (2), quercetin 4'-O-beta-D-glucopyranoside (3), quercetin (5), 4'-O-beta-d-glucopyranoside of quercetin dimer (7), and quercetin dimer (8), and three novel compounds, condensation products of quercetin with protocatechuic acid (4), adduct of quercetin with quercetin 4'-O-beta-D-glucopyranoside (6), and quercetin trimer (9). These phenolic compounds were tested for their antioxidant properties using autoxidation of methyl linoleate in bulk phase or free radical initiated peroxidation of soybean phosphatidylcholine in liposomes. The flavonoid compounds having o-dihydroxy substituent in the B-ring were shown to be effective antioxidants against nonenzymic lipid peroxidation.     

Potential of indigenous antagonistic rhizobacteria in the biological control of Monosporascus root rot and vine decline disease of muskmelon

ABSTRACT

Monosporascus root rot and vine decline (MRVD) of muskmelon, caused by Monosporascus cannonballus, is an economically important disease worldwide. The objectives of this study were to isolate native rhizobacterial strains and to evaluate their ability to promote plant growth and to provide protection against M. cannonballus. Thirty eight native bacterial isolates from the rhizosphere soil of muskmelon and cucumber were screened for their antagonism against M. cannonballus in a dual culture assay. Among them, five isolates viz., Bacillus amyloliquefaciens (B4), Pseudomonas mendocina (B7), Bacillus endophyticus (B10), Pseudomonas resinovorans B11 and P. aeruginosa AT3, identified based on the 16S rRNA gene sequence analysis, showed a significant level of antagonism and the inhibition zone ranged from 5.6 mm to 25.9 mm. Scanning electron microscopic observation of the hyphae of M. cannonballus at the inhibition zone revealed morphological abnormalities including shrinkage, loss of turgidity, pit formation and deformation. These bacterial isolates showed compatibility with one another and with Trichoderma viride. Greenhouse experiments revealed that P. resinovorans B11 was the most effective among the bacterial antagonists in controlling MRVD in melon. When applied as seed treatment and soil application, P. resinovorans B11 reduced the incidence of MRVD by 93.1%, relative to the infected control.     

Thermal degradation of onion quercetin glucosides under roasting conditions

Flavonoids are an important constituent of the human diet. In recent years, they have gained much attention due to their physiological properties, leading to an enormous increase in research on cancer prevention and reduction of cardiovascular diseases. Unfortunately, there is limited information about the fate of flavonoid glycosides during thermal treatment such as cooking, frying, roasting, etc. Such processing techniques may have an impact on the flavonoid structure, resulting in changes of the bioavailability and activity of the flavonoids. In this study, the stability of selected model and onion quercetin glycosides under roasting conditions (180 degrees C) was determined. The influence of the kind and position of the sugar moiety was investigated. As onions contain large amounts of quercetin glycosides and are often subject to thermal processes in food production, their major glycosides were isolated using counter current chromatography and roasted. The thermal treatment led to a degradation of the quercetin glycosides. The main product is the aglycone quercetin, which remained stable during further roasting. During the roasting process of the quercetin diglucoside isolated from onion, the formation of a monoglycoside as an intermediate product was observed. This underlined that the stability of the glycosides is dependent on the kind and position of the sugar moiety.